Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 LINC01565-201ENST00000356020 2697 ntTSL 2 BASIC13.79□□□□□ -0.2
MSX1P28360 PXYLP1-201ENST00000286353 3281 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
MSX1P28360 DEF8-210ENST00000563594 4450 ntAPPRIS P4 TSL 1 (best) BASIC13.79□□□□□ -0.2
MSX1P28360 AC007728.2-201ENST00000563315 2296 ntTSL 5 BASIC13.79□□□□□ -0.2
MSX1P28360 NPAS2-201ENST00000335681 4007 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
MSX1P28360 AP000866.1-201ENST00000499143 2886 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
MSX1P28360 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
MSX1P28360 C15orf52-202ENST00000397536 4717 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
MSX1P28360 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
MSX1P28360 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC13.79□□□□□ -0.2
MSX1P28360 AC055811.4-201ENST00000624039 1754 ntBASIC13.79□□□□□ -0.2
MSX1P28360 BANP-201ENST00000286122 2368 ntTSL 5 BASIC13.79□□□□□ -0.2
MSX1P28360 AKAP1-201ENST00000314126 2380 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
MSX1P28360 MBD1-203ENST00000339998 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
MSX1P28360 WIZ-206ENST00000599686 3644 ntTSL 5 BASIC13.79□□□□□ -0.2
MSX1P28360 NDUFA11-202ENST00000418389 2406 ntTSL 2 BASIC13.79□□□□□ -0.2
MSX1P28360 AKNA-206ENST00000374088 5464 ntAPPRIS P2 TSL 2 BASIC13.79□□□□□ -0.2
MSX1P28360 GCLC-213ENST00000616923 3694 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
MSX1P28360 ABTB2-201ENST00000435224 4902 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
MSX1P28360 SBF1P1-201ENST00000444527 5631 ntBASIC13.79□□□□□ -0.2
MSX1P28360 EXOC3L1-201ENST00000314586 2510 ntAPPRIS P1 TSL 2 BASIC13.79□□□□□ -0.2
MSX1P28360 GNG5-201ENST00000370641 920 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
MSX1P28360 GABARAPL2-201ENST00000037243 1002 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
MSX1P28360 AC016694.1-201ENST00000434179 700 ntBASIC13.79□□□□□ -0.2
MSX1P28360 EIF3FP3-201ENST00000434851 1086 ntBASIC13.79□□□□□ -0.2
MSX1P28360 SIRPB2-203ENST00000444444 884 ntTSL 2 BASIC13.79□□□□□ -0.2
MSX1P28360 SNHG12-210ENST00000483436 682 ntTSL 3 BASIC13.79□□□□□ -0.2
MSX1P28360 AC115284.1-201ENST00000488257 547 ntTSL 4 BASIC13.79□□□□□ -0.2
MSX1P28360 SLC45A2-204ENST00000509381 1040 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
MSX1P28360 AC090099.4-201ENST00000527671 1027 ntTSL 5 BASIC13.79□□□□□ -0.2
MSX1P28360 C12orf49-204ENST00000548356 923 ntTSL 2 BASIC13.79□□□□□ -0.2
MSX1P28360 IFI27L1-210ENST00000556381 804 ntTSL 5 BASIC13.79□□□□□ -0.2
MSX1P28360 C19orf38-203ENST00000592854 1060 ntAPPRIS P1 TSL 5 BASIC13.79□□□□□ -0.2
MSX1P28360 AC010328.2-201ENST00000597698 1111 ntBASIC13.79□□□□□ -0.2
MSX1P28360 AC114737.3-201ENST00000636708 570 ntTSL 4 BASIC13.79□□□□□ -0.2
MSX1P28360 AC068587.10-201ENST00000641210 219 ntBASIC13.79□□□□□ -0.2
MSX1P28360 MIER1-208ENST00000401041 2552 ntTSL 2 BASIC13.79□□□□□ -0.2
MSX1P28360 BMP7-201ENST00000395863 4013 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
MSX1P28360 SLC5A7-202ENST00000409059 2032 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
MSX1P28360 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC13.79□□□□□ -0.2
MSX1P28360 KIF22-208ENST00000569382 2020 ntTSL 5 BASIC13.79□□□□□ -0.2
MSX1P28360 TDRP-205ENST00000613071 3421 ntAPPRIS P1 TSL 3 BASIC13.79□□□□□ -0.2
MSX1P28360 MAGEA8-205ENST00000542674 2084 ntAPPRIS P1 TSL 3 BASIC13.79□□□□□ -0.2
MSX1P28360 CRAT-201ENST00000318080 2763 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
MSX1P28360 ATP6AP2-211ENST00000636196 1403 ntAPPRIS ALT2 TSL 5 BASIC13.79□□□□□ -0.2
MSX1P28360 JADE2-203ENST00000395003 6465 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
MSX1P28360 MPC2-202ENST00000367846 2177 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
MSX1P28360 PLEKHB2-207ENST00000438882 1460 ntTSL 2 BASIC13.79□□□□□ -0.2
MSX1P28360 AC104758.3-201ENST00000563349 1453 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
MSX1P28360 LINC00691-201ENST00000432505 2232 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
MSX1P28360 AC023824.1-201ENST00000562945 2975 ntBASIC13.79□□□□□ -0.2
MSX1P28360 LRCH3-202ENST00000414675 2299 ntAPPRIS ALT2 TSL 2 BASIC13.79□□□□□ -0.2
MSX1P28360 MAP2K6-209ENST00000613873 1509 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
MSX1P28360 PLXNB2-207ENST00000449103 6383 ntAPPRIS P1 TSL 5 BASIC13.79□□□□□ -0.2
MSX1P28360 GINS3-203ENST00000426538 1728 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
MSX1P28360 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
MSX1P28360 ZNF30-202ENST00000439785 2651 ntAPPRIS P4 TSL 5 BASIC13.78□□□□□ -0.2
MSX1P28360 PPFIBP2-201ENST00000299492 3557 ntAPPRIS P3 TSL 1 (best) BASIC13.78□□□□□ -0.2
MSX1P28360 SYT5-207ENST00000590851 3619 ntTSL 2 BASIC13.78□□□□□ -0.2
MSX1P28360 SLCO5A1-203ENST00000524945 3725 ntTSL 2 BASIC13.78□□□□□ -0.2
MSX1P28360 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
MSX1P28360 TCAF1-205ENST00000479870 5733 ntAPPRIS P3 TSL 1 (best) BASIC13.78□□□□□ -0.2
MSX1P28360 NCAPH2-201ENST00000299821 1996 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
MSX1P28360 PTPN20-206ENST00000395722 1995 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
MSX1P28360 CRTC1-202ENST00000338797 6929 ntAPPRIS ALT1 TSL 1 (best) BASIC13.78□□□□□ -0.2
MSX1P28360 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
MSX1P28360 NUP98-201ENST00000324932 6973 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
MSX1P28360 NOX3-201ENST00000159060 2042 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
MSX1P28360 PIGT-246ENST00000639499 2021 ntTSL 5 BASIC13.78□□□□□ -0.2
MSX1P28360 MC1R-202ENST00000555147 3099 ntAPPRIS P1 BASIC13.78□□□□□ -0.2
MSX1P28360 NAALADL1-203ENST00000356632 2118 ntTSL 5 BASIC13.78□□□□□ -0.2
MSX1P28360 ZNF331-217ENST00000512387 2130 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
MSX1P28360 PDP1-203ENST00000517764 2140 ntAPPRIS P3 TSL 2 BASIC13.78□□□□□ -0.2
MSX1P28360 WASHC2A-202ENST00000314664 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
MSX1P28360 SLC35C2-213ENST00000543605 5740 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
MSX1P28360 AL359258.3-201ENST00000622910 2331 ntBASIC13.78□□□□□ -0.2
MSX1P28360 QRICH1-202ENST00000395443 3549 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
MSX1P28360 DHODH-201ENST00000219240 2426 ntAPPRIS P2 TSL 1 (best) BASIC13.78□□□□□ -0.2
MSX1P28360 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
MSX1P28360 ANXA6-215ENST00000523714 2451 ntTSL 2 BASIC13.78□□□□□ -0.2
MSX1P28360 NPHP4-201ENST00000378156 4994 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
MSX1P28360 GTSF1-201ENST00000305879 804 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
MSX1P28360 PRKN-201ENST00000338468 1276 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
MSX1P28360 PLA2G5-201ENST00000375108 1161 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
MSX1P28360 MOGAT3-202ENST00000379423 933 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
MSX1P28360 ZG16B-201ENST00000382280 831 ntAPPRIS P2 TSL 1 (best) BASIC13.78□□□□□ -0.2
MSX1P28360 SETD4-205ENST00000399208 1165 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
MSX1P28360 AL355994.3-201ENST00000437156 466 ntTSL 2 BASIC13.78□□□□□ -0.2
MSX1P28360 SEPT7P9-202ENST00000489259 743 ntTSL 3 BASIC13.78□□□□□ -0.2
MSX1P28360 CLRN2-201ENST00000511148 823 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
MSX1P28360 IL32-218ENST00000530890 774 ntAPPRIS ALT2 TSL 2 BASIC13.78□□□□□ -0.2
MSX1P28360 PLEKHB1-206ENST00000535129 1049 ntAPPRIS ALT1 TSL 2 BASIC13.78□□□□□ -0.2
MSX1P28360 DYNLRB2-205ENST00000568035 409 ntTSL 5 BASIC13.78□□□□□ -0.2
MSX1P28360 ANAPC11-215ENST00000578550 599 ntAPPRIS P1 TSL 2 BASIC13.78□□□□□ -0.2
MSX1P28360 FBXL12-211ENST00000591009 1005 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
MSX1P28360 AC010641.1-201ENST00000591757 529 ntTSL 3 BASIC13.78□□□□□ -0.2
MSX1P28360 ACTG1P22-201ENST00000603793 1099 ntBASIC13.78□□□□□ -0.2
MSX1P28360 AC099850.1-201ENST00000451775 1338 ntTSL 2 BASIC13.78□□□□□ -0.2
MSX1P28360 C3orf67-201ENST00000295966 2650 ntTSL 2 BASIC13.78□□□□□ -0.2
MSX1P28360 TMEM106C-201ENST00000256686 1394 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 39.3 ms