Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 KRT18P67-201ENST00000432816 1264 ntBASIC15.16■□□□□ 0.02
VIMP08670 FAAHP1-202ENST00000446499 1238 ntBASIC15.16■□□□□ 0.02
VIMP08670 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC15.16■□□□□ 0.02
VIMP08670 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
VIMP08670 PENK-208ENST00000523051 772 ntTSL 5 BASIC15.16■□□□□ 0.02
VIMP08670 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC15.16■□□□□ 0.02
VIMP08670 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC15.16■□□□□ 0.02
VIMP08670 SUOX-214ENST00000551841 906 ntTSL 3 BASIC15.16■□□□□ 0.02
VIMP08670 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC15.16■□□□□ 0.02
VIMP08670 ZNF843-202ENST00000564218 3816 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
VIMP08670 AC027307.2-201ENST00000591252 911 ntBASIC15.16■□□□□ 0.02
VIMP08670 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
VIMP08670 NKG7-205ENST00000600427 520 ntTSL 3 BASIC15.16■□□□□ 0.02
VIMP08670 KBTBD7-201ENST00000379483 4734 ntAPPRIS P1 BASIC15.16■□□□□ 0.02
VIMP08670 FUT8-203ENST00000360689 5166 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
VIMP08670 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
VIMP08670 ACADM-202ENST00000370841 2619 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
VIMP08670 TRIM11-204ENST00000493030 5774 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
VIMP08670 PGAP2-201ENST00000278243 2062 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
VIMP08670 CCT4-201ENST00000394440 2520 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
VIMP08670 APBB2-211ENST00000506352 3316 ntAPPRIS ALT1 TSL 5 BASIC15.16■□□□□ 0.02
VIMP08670 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC15.16■□□□□ 0.02
VIMP08670 AC012617.1-204ENST00000586340 2305 ntBASIC15.16■□□□□ 0.02
VIMP08670 ADAM17-204ENST00000618923 1881 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
VIMP08670 AL591122.2-201ENST00000624125 1853 ntBASIC15.16■□□□□ 0.02
VIMP08670 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC15.16■□□□□ 0.02
VIMP08670 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
VIMP08670 PIGT-202ENST00000279036 2245 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
VIMP08670 PIP4K2A-201ENST00000323883 1319 ntTSL 2 BASIC15.16■□□□□ 0.02
VIMP08670 BCAR1-209ENST00000546196 1340 ntBASIC15.16■□□□□ 0.02
VIMP08670 GALNT4-201ENST00000529983 5399 ntAPPRIS P1 BASIC15.16■□□□□ 0.02
VIMP08670 INO80-202ENST00000401393 5991 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
VIMP08670 CLPB-209ENST00000538039 3078 ntAPPRIS ALT1 TSL 2 BASIC15.15■□□□□ 0.02
VIMP08670 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
VIMP08670 MAP7-201ENST00000354570 4152 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
VIMP08670 KDM5C-208ENST00000452825 6096 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
VIMP08670 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
VIMP08670 WASHC2A-209ENST00000611324 4417 ntAPPRIS ALT2 TSL 2 BASIC15.15■□□□□ 0.02
VIMP08670 ABCC10-204ENST00000372530 5033 ntAPPRIS ALT2 TSL 2 BASIC15.15■□□□□ 0.02
VIMP08670 TM9SF1-202ENST00000396854 2055 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
VIMP08670 ST3GAL5-203ENST00000393805 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
VIMP08670 CACNA1G-233ENST00000515765 6981 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
VIMP08670 TCOF1-207ENST00000504761 4467 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
VIMP08670 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC15.15■□□□□ 0.02
VIMP08670 RPS6KA1-213ENST00000526792 2596 ntTSL 5 BASIC15.15■□□□□ 0.02
VIMP08670 ATG13-215ENST00000529655 2566 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
VIMP08670 FAM198B-201ENST00000296530 4985 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
VIMP08670 FAM98A-201ENST00000238823 2816 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
VIMP08670 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
VIMP08670 B4GALT6-201ENST00000237019 2128 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
VIMP08670 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
VIMP08670 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC15.15■□□□□ 0.02
VIMP08670 TSEN2-202ENST00000402228 2149 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
VIMP08670 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
VIMP08670 AC018712.1-201ENST00000455767 687 ntBASIC15.15■□□□□ 0.02
VIMP08670 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC15.15■□□□□ 0.02
VIMP08670 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
VIMP08670 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
VIMP08670 TBCB-205ENST00000585746 875 ntTSL 3 BASIC15.15■□□□□ 0.02
VIMP08670 AL121912.1-201ENST00000603683 238 ntBASIC15.15■□□□□ 0.02
VIMP08670 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC15.15■□□□□ 0.02
VIMP08670 SLCO2B1-203ENST00000428359 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
VIMP08670 FAM90A12P-201ENST00000519497 2375 ntBASIC15.15■□□□□ 0.02
VIMP08670 FAM90A24P-201ENST00000520792 2369 ntBASIC15.15■□□□□ 0.02
VIMP08670 OLFML2A-203ENST00000373580 6425 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
VIMP08670 KLHL34-201ENST00000379499 3641 ntAPPRIS P1 BASIC15.15■□□□□ 0.02
VIMP08670 PPIP5K1-209ENST00000420765 5718 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
VIMP08670 LAMB2-201ENST00000305544 5643 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
VIMP08670 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC15.15■□□□□ 0.02
VIMP08670 LINC01873-201ENST00000428647 1679 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
VIMP08670 ALG3-207ENST00000455059 1697 ntTSL 5 BASIC15.15■□□□□ 0.02
VIMP08670 CR382287.2-201ENST00000623370 1942 ntTSL 2 BASIC15.15■□□□□ 0.02
VIMP08670 ZNF79-202ENST00000543471 2194 ntTSL 2 BASIC15.15■□□□□ 0.02
VIMP08670 ZNF79-203ENST00000612342 2192 ntTSL 2 BASIC15.15■□□□□ 0.02
VIMP08670 FAM122B-202ENST00000343004 4326 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
VIMP08670 MYH14-201ENST00000262269 3848 ntTSL 5 BASIC15.15■□□□□ 0.02
VIMP08670 PLCB1-218ENST00000629992 3095 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
VIMP08670 SLC4A5-201ENST00000346834 6233 ntAPPRIS P4 TSL 5 BASIC15.15■□□□□ 0.02
VIMP08670 GSTCD-206ENST00000507281 2091 ntTSL 5 BASIC15.15■□□□□ 0.02
VIMP08670 AC068987.4-201ENST00000562343 2094 ntTSL 5 BASIC15.15■□□□□ 0.02
VIMP08670 LRRC32-201ENST00000260061 4207 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
VIMP08670 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC15.15■□□□□ 0.02
VIMP08670 GOLGA7B-203ENST00000596005 6378 ntTSL 2 BASIC15.15■□□□□ 0.02
VIMP08670 CD276-202ENST00000318443 3469 ntAPPRIS P2 TSL 2 BASIC15.15■□□□□ 0.02
VIMP08670 FAM153B-220ENST00000515817 1966 ntAPPRIS P2 TSL 5 BASIC15.15■□□□□ 0.02
VIMP08670 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
VIMP08670 INTS14-201ENST00000313182 2393 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
VIMP08670 GSE1-202ENST00000393243 7140 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
VIMP08670 AC073548.1-201ENST00000624088 1882 ntBASIC15.14■□□□□ 0.01
VIMP08670 CYP26B1-201ENST00000001146 4732 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
VIMP08670 L3MBTL1-206ENST00000427442 3157 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
VIMP08670 NKIRAS1-203ENST00000415901 1644 ntAPPRIS ALT1 TSL 5 BASIC15.14■□□□□ 0.01
VIMP08670 GRN-214ENST00000589265 1632 ntTSL 5 BASIC15.14■□□□□ 0.01
VIMP08670 PLAT-205ENST00000519510 2030 ntTSL 5 BASIC15.14■□□□□ 0.01
VIMP08670 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
VIMP08670 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC15.14■□□□□ 0.01
VIMP08670 PSEN2-202ENST00000366783 2306 ntAPPRIS P3 TSL 5 BASIC15.14■□□□□ 0.01
VIMP08670 AGGF1P1-201ENST00000509500 2073 ntBASIC15.14■□□□□ 0.01
VIMP08670 AC142381.1-201ENST00000426099 345 ntBASIC15.14■□□□□ 0.01
VIMP08670 FAM197Y8-203ENST00000450145 560 ntBASIC15.14■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 53.4 ms