Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
HMGB3O15347 HNRNPUP1-201ENST00000554987 333 ntBASIC12.15□□□□□ -0.46
HMGB3O15347 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC12.15□□□□□ -0.46
HMGB3O15347 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC12.15□□□□□ -0.46
HMGB3O15347 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC12.15□□□□□ -0.46
HMGB3O15347 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC12.15□□□□□ -0.46
HMGB3O15347 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC12.15□□□□□ -0.46
HMGB3O15347 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC12.15□□□□□ -0.46
HMGB3O15347 AC117500.6-201ENST00000624871 588 ntBASIC12.15□□□□□ -0.46
HMGB3O15347 ADAM19-201ENST00000257527 6481 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
HMGB3O15347 ARHGEF1-202ENST00000347545 3091 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
HMGB3O15347 HIST3H2BB-201ENST00000620438 2364 ntAPPRIS P1 BASIC12.15□□□□□ -0.46
HMGB3O15347 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC12.15□□□□□ -0.46
HMGB3O15347 PDXK-201ENST00000291565 7366 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
HMGB3O15347 AC018442.1-201ENST00000421439 2061 ntBASIC12.15□□□□□ -0.46
HMGB3O15347 AC022028.2-201ENST00000474115 2619 ntTSL 2 BASIC12.15□□□□□ -0.46
HMGB3O15347 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
HMGB3O15347 ATG3-202ENST00000402314 3010 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
HMGB3O15347 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC12.15□□□□□ -0.46
HMGB3O15347 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
HMGB3O15347 KCNJ5-203ENST00000533599 1350 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
HMGB3O15347 TNK1-207ENST00000576812 3023 ntAPPRIS ALT1 TSL 1 (best) BASIC12.15□□□□□ -0.46
HMGB3O15347 GPR68-203ENST00000531499 2859 ntAPPRIS P2 TSL 1 (best) BASIC12.15□□□□□ -0.46
HMGB3O15347 ZNF576-203ENST00000525771 2327 ntAPPRIS P1 TSL 2 BASIC12.15□□□□□ -0.46
HMGB3O15347 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC12.15□□□□□ -0.46
HMGB3O15347 AP4B1-201ENST00000256658 2742 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.47
HMGB3O15347 FBXW8-202ENST00000455858 4648 ntTSL 1 (best) BASIC12.15□□□□□ -0.47
HMGB3O15347 CDKL3-206ENST00000521118 2160 ntAPPRIS ALT2 TSL 5 BASIC12.15□□□□□ -0.47
HMGB3O15347 ACSL4-202ENST00000348502 5032 ntAPPRIS ALT1 TSL 1 (best) BASIC12.15□□□□□ -0.47
HMGB3O15347 NOX3-201ENST00000159060 2042 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.47
HMGB3O15347 FAM129B-202ENST00000373314 3760 ntTSL 1 (best) BASIC12.15□□□□□ -0.47
HMGB3O15347 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC12.14□□□□□ -0.47
HMGB3O15347 ESPNL-202ENST00000409169 4441 ntTSL 5 BASIC12.14□□□□□ -0.47
HMGB3O15347 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC12.14□□□□□ -0.47
HMGB3O15347 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC12.14□□□□□ -0.47
HMGB3O15347 THBS1-201ENST00000260356 7775 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
HMGB3O15347 ANKRD26-202ENST00000436985 6827 ntAPPRIS ALT2 TSL 1 (best) BASIC12.14□□□□□ -0.47
HMGB3O15347 RBP3-201ENST00000584701 4276 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
HMGB3O15347 SPOCK3-210ENST00000506886 2947 ntAPPRIS ALT2 TSL 5 BASIC12.14□□□□□ -0.47
HMGB3O15347 PRF1-202ENST00000441259 2533 ntAPPRIS P1 TSL 5 BASIC12.14□□□□□ -0.47
HMGB3O15347 CCDC88A-207ENST00000436346 9811 ntAPPRIS ALT2 TSL 5 BASIC12.14□□□□□ -0.47
HMGB3O15347 RREB1-210ENST00000611109 3563 ntTSL 5 BASIC12.14□□□□□ -0.47
HMGB3O15347 KIF6-203ENST00000394362 2394 ntTSL 5 BASIC12.14□□□□□ -0.47
HMGB3O15347 DLGAP1-213ENST00000534970 2365 ntTSL 2 BASIC12.14□□□□□ -0.47
HMGB3O15347 CUL7-201ENST00000265348 5254 ntAPPRIS P3 TSL 1 (best) BASIC12.14□□□□□ -0.47
HMGB3O15347 SCAMP5-202ENST00000425597 3411 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
HMGB3O15347 RASGEF1A-202ENST00000374459 3264 ntAPPRIS ALT2 TSL 2 BASIC12.14□□□□□ -0.47
HMGB3O15347 ZNF785-201ENST00000395216 3282 ntAPPRIS P2 TSL 1 (best) BASIC12.14□□□□□ -0.47
HMGB3O15347 KIAA0141-201ENST00000194118 2203 ntAPPRIS P1 TSL 5 BASIC12.14□□□□□ -0.47
HMGB3O15347 LANCL1-205ENST00000443314 4781 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
HMGB3O15347 RASSF3-204ENST00000542104 3492 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
HMGB3O15347 ESPL1-205ENST00000552462 6447 ntAPPRIS P1 TSL 5 BASIC12.14□□□□□ -0.47
HMGB3O15347 MCRS1-211ENST00000550165 1936 ntAPPRIS P1 TSL 5 BASIC12.14□□□□□ -0.47
HMGB3O15347 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
HMGB3O15347 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
HMGB3O15347 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC12.14□□□□□ -0.47
HMGB3O15347 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
HMGB3O15347 SLC4A1APP2-201ENST00000424054 1259 ntBASIC12.14□□□□□ -0.47
HMGB3O15347 RPS8P6-201ENST00000426177 609 ntBASIC12.14□□□□□ -0.47
HMGB3O15347 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC12.14□□□□□ -0.47
HMGB3O15347 HNRNPDP1-201ENST00000439535 754 ntBASIC12.14□□□□□ -0.47
HMGB3O15347 PRSS29P-201ENST00000440800 595 ntBASIC12.14□□□□□ -0.47
HMGB3O15347 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC12.14□□□□□ -0.47
HMGB3O15347 ELP6-209ENST00000446787 894 ntTSL 3 BASIC12.14□□□□□ -0.47
HMGB3O15347 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC12.14□□□□□ -0.47
HMGB3O15347 AC108751.1-201ENST00000490852 363 ntBASIC12.14□□□□□ -0.47
HMGB3O15347 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC12.14□□□□□ -0.47
HMGB3O15347 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC12.14□□□□□ -0.47
HMGB3O15347 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC12.14□□□□□ -0.47
HMGB3O15347 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC12.14□□□□□ -0.47
HMGB3O15347 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC12.14□□□□□ -0.47
HMGB3O15347 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC12.14□□□□□ -0.47
HMGB3O15347 C19orf70-206ENST00000590389 769 ntTSL 3 BASIC12.14□□□□□ -0.47
HMGB3O15347 DMTN-214ENST00000519907 2658 ntTSL 5 BASIC12.14□□□□□ -0.47
HMGB3O15347 CBX6-201ENST00000216083 3191 ntAPPRIS ALT2 TSL 2 BASIC12.14□□□□□ -0.47
HMGB3O15347 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
HMGB3O15347 DPP9-210ENST00000597849 2025 ntTSL 5 BASIC12.14□□□□□ -0.47
HMGB3O15347 CXCR5-201ENST00000292174 4431 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
HMGB3O15347 SLC36A1-201ENST00000243389 5781 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
HMGB3O15347 LAP3-211ENST00000618908 2100 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
HMGB3O15347 FUT1-201ENST00000310160 4246 ntAPPRIS P1 TSL 5 BASIC12.14□□□□□ -0.47
HMGB3O15347 USP48-213ENST00000529637 3228 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
HMGB3O15347 RAP1GAP-211ENST00000495204 2489 ntAPPRIS ALT2 TSL 1 (best) BASIC12.14□□□□□ -0.47
HMGB3O15347 EHD1-201ENST00000320631 4551 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
HMGB3O15347 AC004754.1-201ENST00000600536 2242 ntAPPRIS P1 TSL 5 BASIC12.14□□□□□ -0.47
HMGB3O15347 BLOC1S6-212ENST00000566753 1996 ntTSL 2 BASIC12.14□□□□□ -0.47
HMGB3O15347 TNFRSF11A-201ENST00000269485 3591 ntAPPRIS ALT2 TSL 1 (best) BASIC12.14□□□□□ -0.47
HMGB3O15347 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC12.14□□□□□ -0.47
HMGB3O15347 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC12.14□□□□□ -0.47
HMGB3O15347 EGOT-201ENST00000414938 1464 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
HMGB3O15347 NDUFS7-202ENST00000313408 2818 ntTSL 2 BASIC12.14□□□□□ -0.47
HMGB3O15347 PMM2-201ENST00000268261 2313 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
HMGB3O15347 CDYL2-203ENST00000562812 2086 ntAPPRIS ALT2 TSL 5 BASIC12.14□□□□□ -0.47
HMGB3O15347 CDYL2-204ENST00000563890 2086 ntAPPRIS ALT2 TSL 5 BASIC12.14□□□□□ -0.47
HMGB3O15347 CDYL2-205ENST00000566173 2086 ntAPPRIS ALT2 TSL 5 BASIC12.14□□□□□ -0.47
HMGB3O15347 PTPA-205ENST00000357197 2653 ntTSL 2 BASIC12.14□□□□□ -0.47
HMGB3O15347 SLC35C2-201ENST00000243896 2447 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
HMGB3O15347 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
HMGB3O15347 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC12.13□□□□□ -0.47
HMGB3O15347 AC104129.1-202ENST00000480694 4481 ntTSL 2 BASIC12.13□□□□□ -0.47
Retrieved 100 of 98,524 protein–RNA pairs in 41.7 ms