Protein–RNA interactions for Protein: O00337

SLC28A1, Sodium/nucleoside cotransporter 1, humanhuman

Predictions only

Length 649 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC28A1O00337 VLDLR-202ENST00000382099 3240 ntAPPRIS ALT1 TSL 1 (best) BASIC14.49□□□□□ -0.09
SLC28A1O00337 ERLIN2-205ENST00000518586 2623 ntTSL 2 BASIC14.49□□□□□ -0.09
SLC28A1O00337 SLC13A5-203ENST00000433363 3435 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
SLC28A1O00337 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC14.49□□□□□ -0.09
SLC28A1O00337 GABRG3-208ENST00000615808 10768 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
SLC28A1O00337 ST20-AS1-201ENST00000560255 4223 ntBASIC14.49□□□□□ -0.09
SLC28A1O00337 MAOB-201ENST00000378069 2566 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
SLC28A1O00337 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC14.49□□□□□ -0.09
SLC28A1O00337 AC104452.1-203ENST00000636166 2266 ntAPPRIS P1 TSL 5 BASIC14.49□□□□□ -0.09
SLC28A1O00337 RUSC1-202ENST00000368347 2503 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.09
SLC28A1O00337 CSGALNACT1-211ENST00000522854 1990 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
SLC28A1O00337 BLOC1S6-212ENST00000566753 1996 ntTSL 2 BASIC14.49□□□□□ -0.09
SLC28A1O00337 SYBU-206ENST00000424158 3007 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.09
SLC28A1O00337 AL031280.1-201ENST00000436991 2224 ntTSL 2 BASIC14.49□□□□□ -0.09
SLC28A1O00337 BBS2-201ENST00000245157 2963 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
SLC28A1O00337 PIDD1-201ENST00000347755 2998 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
SLC28A1O00337 TMPRSS4-214ENST00000523251 1689 ntAPPRIS ALT2 TSL 2 BASIC14.49□□□□□ -0.09
SLC28A1O00337 APC2-201ENST00000233607 10151 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
SLC28A1O00337 SLC34A2-203ENST00000504570 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.09
SLC28A1O00337 KCND3-201ENST00000302127 2659 ntAPPRIS ALT1 TSL 5 BASIC14.49□□□□□ -0.09
SLC28A1O00337 PTBP1-201ENST00000349038 3155 ntAPPRIS P3 TSL 1 (best) BASIC14.48□□□□□ -0.09
SLC28A1O00337 ZC3HAV1-204ENST00000471652 3182 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
SLC28A1O00337 RASA3-201ENST00000334062 4191 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
SLC28A1O00337 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
SLC28A1O00337 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC14.48□□□□□ -0.09
SLC28A1O00337 DUSP27-201ENST00000271385 3597 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
SLC28A1O00337 IARS2-201ENST00000366922 3560 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
SLC28A1O00337 UBXN11-204ENST00000374217 1846 ntAPPRIS ALT2 TSL 2 BASIC14.48□□□□□ -0.09
SLC28A1O00337 RPARP-AS1-202ENST00000492465 1556 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
SLC28A1O00337 LINC01230-201ENST00000625222 3017 ntBASIC14.48□□□□□ -0.09
SLC28A1O00337 PNPLA5-201ENST00000216177 2539 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
SLC28A1O00337 B3GAT2-201ENST00000230053 6565 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
SLC28A1O00337 AKAP7-204ENST00000431975 2954 ntAPPRIS P1 TSL 2 BASIC14.48□□□□□ -0.09
SLC28A1O00337 AP004608.1-203ENST00000528482 3679 ntTSL 5 BASIC14.48□□□□□ -0.09
SLC28A1O00337 ANO6-202ENST00000423947 5504 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
SLC28A1O00337 DAAM2-201ENST00000274867 6194 ntAPPRIS ALT1 TSL 1 (best) BASIC14.48□□□□□ -0.09
SLC28A1O00337 RAB37-206ENST00000392615 2655 ntTSL 3 BASIC14.48□□□□□ -0.09
SLC28A1O00337 RABL2A-206ENST00000409842 1979 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
SLC28A1O00337 UBE2G2-201ENST00000330942 721 ntTSL 3 BASIC14.48□□□□□ -0.09
SLC28A1O00337 C1orf43-205ENST00000368519 1163 ntTSL 2 BASIC14.48□□□□□ -0.09
SLC28A1O00337 BRF1-202ENST00000379932 884 ntTSL 5 BASIC14.48□□□□□ -0.09
SLC28A1O00337 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC14.48□□□□□ -0.09
SLC28A1O00337 MRPS18AP1-201ENST00000414458 589 ntBASIC14.48□□□□□ -0.09
SLC28A1O00337 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC14.48□□□□□ -0.09
SLC28A1O00337 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC14.48□□□□□ -0.09
SLC28A1O00337 ZNF7-206ENST00000528130 1134 ntTSL 5 BASIC14.48□□□□□ -0.09
SLC28A1O00337 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC14.48□□□□□ -0.09
SLC28A1O00337 SPDYE22P-201ENST00000582158 798 ntBASIC14.48□□□□□ -0.09
SLC28A1O00337 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC14.48□□□□□ -0.09
SLC28A1O00337 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC14.48□□□□□ -0.09
SLC28A1O00337 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC14.48□□□□□ -0.09
SLC28A1O00337 TPM1-206ENST00000358278 1717 ntAPPRIS P3 TSL 1 (best) BASIC14.48□□□□□ -0.09
SLC28A1O00337 CD93-201ENST00000246006 6708 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
SLC28A1O00337 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
SLC28A1O00337 FOXP3-203ENST00000376207 2382 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
SLC28A1O00337 SPRY4-202ENST00000434127 2379 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
SLC28A1O00337 TMEM258-207ENST00000543510 1692 ntTSL 2 BASIC14.48□□□□□ -0.09
SLC28A1O00337 CACNA2D1-201ENST00000356253 3858 ntTSL 5 BASIC14.48□□□□□ -0.09
SLC28A1O00337 GPRC5C-202ENST00000392627 2988 ntAPPRIS P3 TSL 1 (best) BASIC14.48□□□□□ -0.09
SLC28A1O00337 ATP5F1-202ENST00000369722 3156 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
SLC28A1O00337 AC114490.1-201ENST00000417456 3163 ntTSL 2 BASIC14.48□□□□□ -0.09
SLC28A1O00337 AC007603.1-201ENST00000563124 2085 ntTSL 2 BASIC14.48□□□□□ -0.09
SLC28A1O00337 GTPBP1-201ENST00000216044 5126 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
SLC28A1O00337 PRAMEF25-202ENST00000619661 1840 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
SLC28A1O00337 RNF123-202ENST00000432042 2670 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
SLC28A1O00337 SLC26A11-201ENST00000361193 2885 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
SLC28A1O00337 FBXO5-202ENST00000367241 2221 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
SLC28A1O00337 SFMBT1-201ENST00000394752 4548 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
SLC28A1O00337 GTF2I-212ENST00000573035 4548 ntAPPRIS P4 TSL 1 (best) BASIC14.47□□□□□ -0.09
SLC28A1O00337 FANCG-201ENST00000378643 2631 ntAPPRIS P2 TSL 1 (best) BASIC14.47□□□□□ -0.09
SLC28A1O00337 SUMO3-203ENST00000397898 1779 ntTSL 3 BASIC14.47□□□□□ -0.09
SLC28A1O00337 AC117489.1-201ENST00000625169 3217 ntBASIC14.47□□□□□ -0.09
SLC28A1O00337 TARS2-203ENST00000369054 1998 ntTSL 2 BASIC14.47□□□□□ -0.09
SLC28A1O00337 PLEKHD1-201ENST00000322564 4865 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
SLC28A1O00337 CTBP1-AS2-206ENST00000581398 5652 ntBASIC14.47□□□□□ -0.09
SLC28A1O00337 SNRPN-201ENST00000346403 1304 ntAPPRIS P1 TSL 5 BASIC14.47□□□□□ -0.09
SLC28A1O00337 FKBPL-201ENST00000375156 1345 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
SLC28A1O00337 AMT-232ENST00000636199 1546 ntTSL 5 BASIC14.47□□□□□ -0.09
SLC28A1O00337 OXA1L-201ENST00000285848 1719 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
SLC28A1O00337 ATL3-203ENST00000538786 1920 ntAPPRIS ALT2 TSL 2 BASIC14.47□□□□□ -0.09
SLC28A1O00337 ARMCX6-208ENST00000539247 1928 ntAPPRIS P1 TSL 4 BASIC14.47□□□□□ -0.09
SLC28A1O00337 UMODL1-AS1-201ENST00000329015 2141 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
SLC28A1O00337 TNN-203ENST00000622870 3719 ntTSL 5 BASIC14.47□□□□□ -0.09
SLC28A1O00337 WSCD2-206ENST00000547525 4481 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
SLC28A1O00337 GAD2-201ENST00000259271 2462 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
SLC28A1O00337 SLC11A2-204ENST00000541174 2470 ntAPPRIS P3 TSL 1 (best) BASIC14.47□□□□□ -0.09
SLC28A1O00337 USP4-203ENST00000415188 1454 ntTSL 3 BASIC14.47□□□□□ -0.09
SLC28A1O00337 CATSPER2P1-203ENST00000429276 1466 ntTSL 2 BASIC14.47□□□□□ -0.09
SLC28A1O00337 B9D1-201ENST00000261499 908 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
SLC28A1O00337 ETFB-201ENST00000309244 900 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
SLC28A1O00337 CTRB1-201ENST00000361017 858 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
SLC28A1O00337 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC14.47□□□□□ -0.09
SLC28A1O00337 B9D1-203ENST00000395615 805 ntTSL 3 BASIC14.47□□□□□ -0.09
SLC28A1O00337 METTL26-204ENST00000397665 558 ntTSL 2 BASIC14.47□□□□□ -0.09
SLC28A1O00337 C1QBPP1-201ENST00000400117 770 ntBASIC14.47□□□□□ -0.09
SLC28A1O00337 LRP5L-201ENST00000402785 1193 ntAPPRIS P2 TSL 1 (best) BASIC14.47□□□□□ -0.09
SLC28A1O00337 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC14.47□□□□□ -0.09
SLC28A1O00337 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC14.47□□□□□ -0.09
SLC28A1O00337 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC14.47□□□□□ -0.09
SLC28A1O00337 CD81-207ENST00000481687 890 ntTSL 2 BASIC14.47□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms