Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 SHBG-207ENST00000570547 801 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
PCDHGA1Q9Y5H4 SMIM22-209ENST00000591870 355 ntAPPRIS ALT2 TSL 2 BASIC14.4□□□□□ -0.1
PCDHGA1Q9Y5H4 AC005779.2-201ENST00000593083 550 ntAPPRIS P1 TSL 4 BASIC14.4□□□□□ -0.1
PCDHGA1Q9Y5H4 IBA57-201ENST00000366711 7817 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
PCDHGA1Q9Y5H4 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
PCDHGA1Q9Y5H4 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
PCDHGA1Q9Y5H4 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC14.4□□□□□ -0.1
PCDHGA1Q9Y5H4 MAGEB2-201ENST00000378988 1610 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
PCDHGA1Q9Y5H4 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
PCDHGA1Q9Y5H4 ASCC3-207ENST00000522650 2828 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
PCDHGA1Q9Y5H4 RSPH3-201ENST00000252655 2175 ntAPPRIS P2 TSL 1 (best) BASIC14.4□□□□□ -0.1
PCDHGA1Q9Y5H4 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
PCDHGA1Q9Y5H4 KLK6-201ENST00000310157 1511 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
PCDHGA1Q9Y5H4 AC026904.3-201ENST00000636550 1530 ntTSL 5 BASIC14.4□□□□□ -0.1
PCDHGA1Q9Y5H4 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
PCDHGA1Q9Y5H4 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
PCDHGA1Q9Y5H4 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC14.4□□□□□ -0.1
PCDHGA1Q9Y5H4 TGFB1I1-201ENST00000361773 1773 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
PCDHGA1Q9Y5H4 RCN2-203ENST00000394885 6347 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
PCDHGA1Q9Y5H4 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC14.39□□□□□ -0.11
PCDHGA1Q9Y5H4 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
PCDHGA1Q9Y5H4 EPB41L3-202ENST00000342933 4270 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
PCDHGA1Q9Y5H4 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
PCDHGA1Q9Y5H4 RBPJ-205ENST00000355476 5990 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
PCDHGA1Q9Y5H4 SAP130-203ENST00000357702 4173 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
PCDHGA1Q9Y5H4 SEPT12-201ENST00000268231 1469 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
PCDHGA1Q9Y5H4 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
PCDHGA1Q9Y5H4 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
PCDHGA1Q9Y5H4 PPIL6-207ENST00000521072 4128 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
PCDHGA1Q9Y5H4 GNE-202ENST00000396594 5298 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
PCDHGA1Q9Y5H4 KIF3A-202ENST00000378746 6325 ntAPPRIS P3 TSL 5 BASIC14.39□□□□□ -0.11
PCDHGA1Q9Y5H4 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
PCDHGA1Q9Y5H4 SLC13A5-208ENST00000573648 1723 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
PCDHGA1Q9Y5H4 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
PCDHGA1Q9Y5H4 KRTAP19-7-201ENST00000334849 440 ntAPPRIS P1 BASIC14.39□□□□□ -0.11
PCDHGA1Q9Y5H4 KRTAP10-3-201ENST00000391620 971 ntAPPRIS P1 BASIC14.39□□□□□ -0.11
PCDHGA1Q9Y5H4 AL627231.1-201ENST00000394467 1125 ntBASIC14.39□□□□□ -0.11
PCDHGA1Q9Y5H4 RHOG-203ENST00000396979 1289 ntAPPRIS P1 TSL 3 BASIC14.39□□□□□ -0.11
PCDHGA1Q9Y5H4 SERF2-209ENST00000409646 559 ntTSL 4 BASIC14.39□□□□□ -0.11
PCDHGA1Q9Y5H4 AL021707.5-201ENST00000420118 461 ntTSL 5 BASIC14.39□□□□□ -0.11
PCDHGA1Q9Y5H4 FBXO24-204ENST00000465843 957 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
PCDHGA1Q9Y5H4 TVP23C-205ENST00000518321 1080 ntAPPRIS P2 TSL 1 (best) BASIC14.39□□□□□ -0.11
PCDHGA1Q9Y5H4 UBXN1-214ENST00000533000 367 ntTSL 5 BASIC14.39□□□□□ -0.11
PCDHGA1Q9Y5H4 RHOG-204ENST00000533217 886 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
PCDHGA1Q9Y5H4 SNHG14-213ENST00000551077 638 ntTSL 5 BASIC14.39□□□□□ -0.11
PCDHGA1Q9Y5H4 LINC01629-201ENST00000553613 581 ntTSL 4 BASIC14.39□□□□□ -0.11
PCDHGA1Q9Y5H4 TMEM231-206ENST00000565067 1078 ntTSL 5 BASIC14.39□□□□□ -0.11
PCDHGA1Q9Y5H4 AC127024.2-201ENST00000581019 789 ntTSL 5 BASIC14.39□□□□□ -0.11
PCDHGA1Q9Y5H4 WDR7-208ENST00000589935 544 ntTSL 4 BASIC14.39□□□□□ -0.11
PCDHGA1Q9Y5H4 AC136475.1-202ENST00000602429 1151 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
PCDHGA1Q9Y5H4 CUTA-215ENST00000611509 1199 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
PCDHGA1Q9Y5H4 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
PCDHGA1Q9Y5H4 HS6ST3-201ENST00000376705 7804 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
PCDHGA1Q9Y5H4 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC14.39□□□□□ -0.11
PCDHGA1Q9Y5H4 GOLGA8S-201ENST00000562295 1878 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
PCDHGA1Q9Y5H4 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC14.39□□□□□ -0.11
PCDHGA1Q9Y5H4 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
PCDHGA1Q9Y5H4 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC14.39□□□□□ -0.11
PCDHGA1Q9Y5H4 MTA1-202ENST00000405646 2709 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
PCDHGA1Q9Y5H4 COL5A1-208ENST00000618395 8437 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
PCDHGA1Q9Y5H4 DLX4-202ENST00000411890 1404 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
PCDHGA1Q9Y5H4 AGPS-201ENST00000264167 7764 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
PCDHGA1Q9Y5H4 ASB10-204ENST00000420175 1694 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
PCDHGA1Q9Y5H4 EXOC7-213ENST00000467929 2260 ntTSL 2 BASIC14.39□□□□□ -0.11
PCDHGA1Q9Y5H4 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
PCDHGA1Q9Y5H4 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC14.39□□□□□ -0.11
PCDHGA1Q9Y5H4 PAXBP1-202ENST00000331923 3995 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
PCDHGA1Q9Y5H4 PM20D2-201ENST00000275072 4708 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
PCDHGA1Q9Y5H4 CYP1A1-203ENST00000395049 1594 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
PCDHGA1Q9Y5H4 EIF4G1-209ENST00000414031 5569 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
PCDHGA1Q9Y5H4 NACAD-202ENST00000490531 4780 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
PCDHGA1Q9Y5H4 FOSB-213ENST00000615753 1468 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
PCDHGA1Q9Y5H4 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
PCDHGA1Q9Y5H4 FBN2-205ENST00000508989 4987 ntTSL 2 BASIC14.38□□□□□ -0.11
PCDHGA1Q9Y5H4 MASTL-203ENST00000375946 3623 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
PCDHGA1Q9Y5H4 FAM90A7P-201ENST00000382628 1395 ntBASIC14.38□□□□□ -0.11
PCDHGA1Q9Y5H4 FAM90A23P-201ENST00000400136 1395 ntBASIC14.38□□□□□ -0.11
PCDHGA1Q9Y5H4 TRIM45-201ENST00000256649 3515 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
PCDHGA1Q9Y5H4 RPS16-202ENST00000339471 643 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
PCDHGA1Q9Y5H4 RPL3-202ENST00000401609 1289 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
PCDHGA1Q9Y5H4 AC078875.1-201ENST00000431907 724 ntBASIC14.38□□□□□ -0.11
PCDHGA1Q9Y5H4 RPL7P35-201ENST00000446943 740 ntBASIC14.38□□□□□ -0.11
PCDHGA1Q9Y5H4 AC106047.1-202ENST00000467484 482 ntTSL 2 BASIC14.38□□□□□ -0.11
PCDHGA1Q9Y5H4 AC246817.2-203ENST00000517357 569 ntTSL 4 BASIC14.38□□□□□ -0.11
PCDHGA1Q9Y5H4 AC246817.2-202ENST00000519393 564 ntTSL 4 BASIC14.38□□□□□ -0.11
PCDHGA1Q9Y5H4 IKBKB-212ENST00000519735 1166 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
PCDHGA1Q9Y5H4 HOXA10-AS-202ENST00000519935 1161 ntTSL 3 BASIC14.38□□□□□ -0.11
PCDHGA1Q9Y5H4 ERICH5-202ENST00000545282 596 ntAPPRIS ALT2 TSL 2 BASIC14.38□□□□□ -0.11
PCDHGA1Q9Y5H4 TPM1-223ENST00000560445 485 ntTSL 3 BASIC14.38□□□□□ -0.11
PCDHGA1Q9Y5H4 DNM1P30-201ENST00000563586 452 ntBASIC14.38□□□□□ -0.11
PCDHGA1Q9Y5H4 STUB1-204ENST00000564370 875 ntTSL 2 BASIC14.38□□□□□ -0.11
PCDHGA1Q9Y5H4 ERVK13-1-204ENST00000566343 567 ntTSL 4 BASIC14.38□□□□□ -0.11
PCDHGA1Q9Y5H4 AC093525.1-201ENST00000569317 596 ntAPPRIS P1 TSL 3 BASIC14.38□□□□□ -0.11
PCDHGA1Q9Y5H4 NAT9-211ENST00000580632 799 ntTSL 3 BASIC14.38□□□□□ -0.11
PCDHGA1Q9Y5H4 AC079336.4-201ENST00000584219 408 ntTSL 2 BASIC14.38□□□□□ -0.11
PCDHGA1Q9Y5H4 AC092171.5-201ENST00000608012 942 ntBASIC14.38□□□□□ -0.11
PCDHGA1Q9Y5H4 ALKBH2-208ENST00000619381 895 ntTSL 5 BASIC14.38□□□□□ -0.11
PCDHGA1Q9Y5H4 CDK7-214ENST00000626796 358 ntTSL 5 BASIC14.38□□□□□ -0.11
PCDHGA1Q9Y5H4 CDK7-215ENST00000629350 1149 ntTSL 5 BASIC14.38□□□□□ -0.11
PCDHGA1Q9Y5H4 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 45.5 ms