Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC16.26■□□□□ 0.19
CCDC42Q96M95 VSIR-201ENST00000394957 4689 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CCDC42Q96M95 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
CCDC42Q96M95 HLA-K-203ENST00000430151 1046 ntBASIC16.26■□□□□ 0.19
CCDC42Q96M95 LINC01067-201ENST00000432575 664 ntTSL 3 BASIC16.26■□□□□ 0.19
CCDC42Q96M95 AP000347.1-202ENST00000435868 847 ntBASIC16.26■□□□□ 0.19
CCDC42Q96M95 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC16.26■□□□□ 0.19
CCDC42Q96M95 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC16.26■□□□□ 0.19
CCDC42Q96M95 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC16.26■□□□□ 0.19
CCDC42Q96M95 KLF2P3-201ENST00000451977 1087 ntBASIC16.26■□□□□ 0.19
CCDC42Q96M95 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC16.26■□□□□ 0.19
CCDC42Q96M95 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC16.26■□□□□ 0.19
CCDC42Q96M95 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC16.26■□□□□ 0.19
CCDC42Q96M95 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CCDC42Q96M95 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC16.26■□□□□ 0.19
CCDC42Q96M95 SSH2-210ENST00000582084 560 ntTSL 3 BASIC16.26■□□□□ 0.19
CCDC42Q96M95 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC16.26■□□□□ 0.19
CCDC42Q96M95 AC243829.4-204ENST00000616926 1115 ntTSL 5 BASIC16.26■□□□□ 0.19
CCDC42Q96M95 AL158212.4-201ENST00000624062 1286 ntBASIC16.26■□□□□ 0.19
CCDC42Q96M95 TCOF1-202ENST00000377797 5095 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
CCDC42Q96M95 NUDT16-202ENST00000521288 6108 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CCDC42Q96M95 CDH1-213ENST00000612417 2068 ntTSL 5 BASIC16.26■□□□□ 0.19
CCDC42Q96M95 PTPRA-201ENST00000216877 3725 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CCDC42Q96M95 NDNF-201ENST00000379692 2885 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CCDC42Q96M95 FBXO41-201ENST00000295133 6928 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CCDC42Q96M95 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
CCDC42Q96M95 ECHDC1-220ENST00000528402 1449 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
CCDC42Q96M95 GABRG3-208ENST00000615808 10768 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CCDC42Q96M95 ZFP36L1-201ENST00000336440 3026 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
CCDC42Q96M95 CASC2-202ENST00000426021 3232 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
CCDC42Q96M95 AC087386.2-201ENST00000623212 4637 ntBASIC16.26■□□□□ 0.19
CCDC42Q96M95 EIF4G1-218ENST00000434061 5026 ntTSL 2 BASIC16.26■□□□□ 0.19
CCDC42Q96M95 FAM98B-202ENST00000397609 4388 ntAPPRIS P2 TSL 5 BASIC16.26■□□□□ 0.19
CCDC42Q96M95 GOLIM4-202ENST00000470487 4373 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CCDC42Q96M95 FRZB-201ENST00000295113 3162 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CCDC42Q96M95 ZNF79-202ENST00000543471 2194 ntTSL 2 BASIC16.26■□□□□ 0.19
CCDC42Q96M95 ZNF79-203ENST00000612342 2192 ntTSL 2 BASIC16.26■□□□□ 0.19
CCDC42Q96M95 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC16.26■□□□□ 0.19
CCDC42Q96M95 ZBTB17-202ENST00000375743 2745 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
CCDC42Q96M95 ARRDC4-201ENST00000268042 4072 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CCDC42Q96M95 SIGLEC6-202ENST00000346477 1940 ntAPPRIS ALT2 TSL 2 BASIC16.25■□□□□ 0.19
CCDC42Q96M95 ATL3-203ENST00000538786 1920 ntAPPRIS ALT2 TSL 2 BASIC16.25■□□□□ 0.19
CCDC42Q96M95 ATG5-201ENST00000343245 3092 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CCDC42Q96M95 SSTR2-201ENST00000357585 7683 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CCDC42Q96M95 KDELR2-201ENST00000258739 2884 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CCDC42Q96M95 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
CCDC42Q96M95 ENDOU-203ENST00000545824 1513 ntTSL 2 BASIC16.25■□□□□ 0.19
CCDC42Q96M95 SC5D-202ENST00000392789 2258 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CCDC42Q96M95 API5-203ENST00000455725 2257 ntTSL 2 BASIC16.25■□□□□ 0.19
CCDC42Q96M95 AC093525.8-201ENST00000624099 1342 ntBASIC16.25■□□□□ 0.19
CCDC42Q96M95 TMEM212-201ENST00000334567 1881 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
CCDC42Q96M95 KIAA1257-204ENST00000511438 2408 ntAPPRIS ALT2 TSL 2 BASIC16.25■□□□□ 0.19
CCDC42Q96M95 OTUD6A-201ENST00000338352 1689 ntAPPRIS P1 BASIC16.25■□□□□ 0.19
CCDC42Q96M95 AC008894.2-201ENST00000597983 2987 ntTSL 2 BASIC16.25■□□□□ 0.19
CCDC42Q96M95 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC16.25■□□□□ 0.19
CCDC42Q96M95 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CCDC42Q96M95 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC16.25■□□□□ 0.19
CCDC42Q96M95 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC16.25■□□□□ 0.19
CCDC42Q96M95 BAD-202ENST00000394531 631 ntTSL 3 BASIC16.25■□□□□ 0.19
CCDC42Q96M95 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC16.25■□□□□ 0.19
CCDC42Q96M95 WRB-204ENST00000398753 699 ntTSL 3 BASIC16.25■□□□□ 0.19
CCDC42Q96M95 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC16.25■□□□□ 0.19
CCDC42Q96M95 MEIS3P1-201ENST00000495167 958 ntBASIC16.25■□□□□ 0.19
CCDC42Q96M95 IL32-211ENST00000525643 1272 ntAPPRIS P4 TSL 1 (best) BASIC16.25■□□□□ 0.19
CCDC42Q96M95 IL32-213ENST00000528163 950 ntAPPRIS P4 TSL 2 BASIC16.25■□□□□ 0.19
CCDC42Q96M95 RAB35-202ENST00000534951 939 ntTSL 2 BASIC16.25■□□□□ 0.19
CCDC42Q96M95 BAD-207ENST00000544785 525 ntTSL 3 BASIC16.25■□□□□ 0.19
CCDC42Q96M95 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
CCDC42Q96M95 AC007569.1-201ENST00000550306 600 ntTSL 3 BASIC16.25■□□□□ 0.19
CCDC42Q96M95 IL32-231ENST00000551513 791 ntAPPRIS ALT2 TSL 3 BASIC16.25■□□□□ 0.19
CCDC42Q96M95 PLA2G15-209ENST00000566188 1203 ntTSL 2 BASIC16.25■□□□□ 0.19
CCDC42Q96M95 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC16.25■□□□□ 0.19
CCDC42Q96M95 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC16.25■□□□□ 0.19
CCDC42Q96M95 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC16.25■□□□□ 0.19
CCDC42Q96M95 AL844908.2-201ENST00000609461 460 ntBASIC16.25■□□□□ 0.19
CCDC42Q96M95 AL596442.2-201ENST00000610240 980 ntBASIC16.25■□□□□ 0.19
CCDC42Q96M95 MFSD11-211ENST00000588460 3612 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
CCDC42Q96M95 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
CCDC42Q96M95 AL589740.1-203ENST00000433637 1984 ntTSL 2 BASIC16.25■□□□□ 0.19
CCDC42Q96M95 C8orf49-201ENST00000525043 1968 ntBASIC16.25■□□□□ 0.19
CCDC42Q96M95 HNRNPH3-201ENST00000265866 2339 ntAPPRIS P4 TSL 1 (best) BASIC16.25■□□□□ 0.19
CCDC42Q96M95 TC2N-206ENST00000556018 1770 ntTSL 2 BASIC16.25■□□□□ 0.19
CCDC42Q96M95 CDK17-201ENST00000261211 4157 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CCDC42Q96M95 IL20RA-201ENST00000316649 3485 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CCDC42Q96M95 MBD4-204ENST00000503197 2099 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
CCDC42Q96M95 AC007603.1-201ENST00000563124 2085 ntTSL 2 BASIC16.25■□□□□ 0.19
CCDC42Q96M95 PTENP1-202ENST00000532280 3996 ntBASIC16.25■□□□□ 0.19
CCDC42Q96M95 SH3PXD2B-203ENST00000519643 1394 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
CCDC42Q96M95 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
CCDC42Q96M95 INPPL1-213ENST00000541756 4649 ntTSL 5 BASIC16.25■□□□□ 0.19
CCDC42Q96M95 TRIM65-201ENST00000269383 3439 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CCDC42Q96M95 TNPO2-202ENST00000425528 5122 ntAPPRIS P4 TSL 5 BASIC16.25■□□□□ 0.19
CCDC42Q96M95 CKMT2-201ENST00000254035 1512 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CCDC42Q96M95 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CCDC42Q96M95 ZNF846-201ENST00000397902 2016 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CCDC42Q96M95 ITGAM-202ENST00000544665 4718 ntAPPRIS ALT1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CCDC42Q96M95 NUDT4-201ENST00000337179 9753 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
CCDC42Q96M95 KHNYN-201ENST00000251343 6725 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CCDC42Q96M95 TFCP2-201ENST00000257915 3546 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CCDC42Q96M95 ARL10-201ENST00000310389 10845 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 49.4 ms