Protein–RNA interactions for Protein: Q06643

LTB, Lymphotoxin-beta, humanhuman

Predictions only

Length 244 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LTBQ06643 FERMT3-202ENST00000345728 2481 ntAPPRIS ALT1 TSL 1 (best) BASIC13.78□□□□□ -0.2
LTBQ06643 PPM1F-201ENST00000263212 5143 ntAPPRIS P2 TSL 1 (best) BASIC13.78□□□□□ -0.2
LTBQ06643 SLC22A7-202ENST00000372585 2555 ntAPPRIS P4 TSL 5 BASIC13.78□□□□□ -0.2
LTBQ06643 ALG1-204ENST00000588623 2671 ntTSL 1 (best) BASIC13.77□□□□□ -0.2
LTBQ06643 CLPTM1-202ENST00000541297 2732 ntTSL 2 BASIC13.77□□□□□ -0.2
LTBQ06643 CSDC2-201ENST00000306149 2777 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
LTBQ06643 AC139749.1-202ENST00000617529 3139 ntBASIC13.77□□□□□ -0.2
LTBQ06643 PITPNM1-216ENST00000534749 4189 ntAPPRIS P3 TSL 1 (best) BASIC13.77□□□□□ -0.2
LTBQ06643 UBR5-212ENST00000521922 9008 ntAPPRIS ALT1 TSL 5 BASIC13.77□□□□□ -0.2
LTBQ06643 PALD1-201ENST00000263563 4555 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
LTBQ06643 HIPK4-201ENST00000291823 2452 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
LTBQ06643 POLD4-201ENST00000312419 918 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
LTBQ06643 LARGE1-201ENST00000354992 4409 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
LTBQ06643 ZNF772-202ENST00000356584 1799 ntAPPRIS ALT2 TSL 2 BASIC13.77□□□□□ -0.21
LTBQ06643 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC13.77□□□□□ -0.21
LTBQ06643 TDRD10-201ENST00000368480 1776 ntAPPRIS ALT2 TSL 2 BASIC13.77□□□□□ -0.21
LTBQ06643 BEX3-203ENST00000372635 805 ntAPPRIS P1 TSL 2 BASIC13.77□□□□□ -0.21
LTBQ06643 CCDC50-201ENST00000392455 8429 ntAPPRIS ALT1 TSL 1 (best) BASIC13.77□□□□□ -0.21
LTBQ06643 GPC3-202ENST00000394299 2379 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
LTBQ06643 PES1-204ENST00000402284 2144 ntTSL 5 BASIC13.77□□□□□ -0.21
LTBQ06643 AC098850.1-201ENST00000419919 790 ntBASIC13.77□□□□□ -0.21
LTBQ06643 MEP1AP4-201ENST00000423244 1087 ntBASIC13.77□□□□□ -0.21
LTBQ06643 HLA-K-203ENST00000430151 1046 ntBASIC13.77□□□□□ -0.21
LTBQ06643 ACTBP11-201ENST00000436287 1126 ntBASIC13.77□□□□□ -0.21
LTBQ06643 NR1H3-211ENST00000441012 1637 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
LTBQ06643 AL606760.2-202ENST00000452466 524 ntTSL 5 BASIC13.77□□□□□ -0.21
LTBQ06643 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC13.77□□□□□ -0.21
LTBQ06643 AC119751.2-201ENST00000504529 210 ntBASIC13.77□□□□□ -0.21
LTBQ06643 STARD4-205ENST00000505803 803 ntAPPRIS P1 TSL 2 BASIC13.77□□□□□ -0.21
LTBQ06643 AC093004.1-201ENST00000508850 424 ntBASIC13.77□□□□□ -0.21
LTBQ06643 STARD4-207ENST00000509887 1186 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
LTBQ06643 AC009686.1-201ENST00000522494 364 ntTSL 3 BASIC13.77□□□□□ -0.21
LTBQ06643 HBS1L-208ENST00000525067 582 ntTSL 3 BASIC13.77□□□□□ -0.21
LTBQ06643 E2F6-212ENST00000546212 3191 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
LTBQ06643 LINC02298-201ENST00000546968 965 ntTSL 5 BASIC13.77□□□□□ -0.21
LTBQ06643 AL122035.1-201ENST00000556640 550 ntTSL 2 BASIC13.77□□□□□ -0.21
LTBQ06643 CDH16-207ENST00000568632 2526 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
LTBQ06643 LINC01975-201ENST00000571890 549 ntTSL 4 BASIC13.77□□□□□ -0.21
LTBQ06643 IFNL3-202ENST00000613087 734 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.21
LTBQ06643 HIST1H3I-201ENST00000616365 411 ntAPPRIS P1 BASIC13.77□□□□□ -0.21
LTBQ06643 PHF14-215ENST00000634607 3407 ntAPPRIS P1 TSL 5 BASIC13.77□□□□□ -0.21
LTBQ06643 AC092506.1-204ENST00000634888 1066 ntTSL 5 BASIC13.77□□□□□ -0.21
LTBQ06643 ARMCX4-202ENST00000423738 7424 ntAPPRIS P1 TSL 5 BASIC13.77□□□□□ -0.21
LTBQ06643 STK17B-201ENST00000263955 5287 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
LTBQ06643 PXDNL-201ENST00000356297 4805 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
LTBQ06643 PDE7A-203ENST00000401827 3673 ntAPPRIS ALT1 TSL 1 (best) BASIC13.77□□□□□ -0.21
LTBQ06643 C17orf80-203ENST00000359042 3645 ntAPPRIS P3 TSL 5 BASIC13.77□□□□□ -0.21
LTBQ06643 FAM114A2-215ENST00000522858 3379 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
LTBQ06643 ARHGAP4-202ENST00000370016 3095 ntAPPRIS ALT2 TSL 5 BASIC13.77□□□□□ -0.21
LTBQ06643 ELF2-202ENST00000379549 3005 ntTSL 2 BASIC13.77□□□□□ -0.21
LTBQ06643 C22orf34-201ENST00000343999 2816 ntTSL 2 BASIC13.77□□□□□ -0.21
LTBQ06643 EID1-201ENST00000530028 2298 ntAPPRIS P1 BASIC13.76□□□□□ -0.21
LTBQ06643 SEC16A-202ENST00000290037 8982 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
LTBQ06643 TTC29-208ENST00000513335 2226 ntAPPRIS ALT2 TSL 2 BASIC13.76□□□□□ -0.21
LTBQ06643 ZNF607-201ENST00000355202 4364 ntAPPRIS P3 TSL 2 BASIC13.76□□□□□ -0.21
LTBQ06643 WDR25-204ENST00000554175 2055 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
LTBQ06643 TMEM198B-201ENST00000471276 1958 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
LTBQ06643 KCTD3-201ENST00000259154 3931 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
LTBQ06643 AFAP1-201ENST00000358461 7516 ntAPPRIS P3 TSL 2 BASIC13.76□□□□□ -0.21
LTBQ06643 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC13.76□□□□□ -0.21
LTBQ06643 GRK6P1-201ENST00000400595 1711 ntBASIC13.76□□□□□ -0.21
LTBQ06643 GNB2-202ENST00000393924 1524 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
LTBQ06643 POMK-203ENST00000614426 1527 ntAPPRIS P1 TSL 4 BASIC13.76□□□□□ -0.21
LTBQ06643 DMRT2-202ENST00000302441 1495 ntTSL 5 BASIC13.76□□□□□ -0.21
LTBQ06643 FBP1-203ENST00000415431 1487 ntAPPRIS P1 TSL 2 BASIC13.76□□□□□ -0.21
LTBQ06643 CTSB-220ENST00000531089 1436 ntAPPRIS P1 TSL 5 BASIC13.76□□□□□ -0.21
LTBQ06643 DARS-AS1-209ENST00000594219 1420 ntTSL 5 BASIC13.76□□□□□ -0.21
LTBQ06643 SRD5A3-201ENST00000264228 4190 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
LTBQ06643 GRK6-203ENST00000393576 2792 ntTSL 5 BASIC13.76□□□□□ -0.21
LTBQ06643 PRR23C-201ENST00000413199 2791 ntAPPRIS P1 BASIC13.76□□□□□ -0.21
LTBQ06643 CECR7-202ENST00000441006 2726 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
LTBQ06643 AMPD2-218ENST00000528454 2728 ntTSL 2 BASIC13.76□□□□□ -0.21
LTBQ06643 CXorf40A-201ENST00000359293 974 ntAPPRIS P3 TSL 2 BASIC13.76□□□□□ -0.21
LTBQ06643 MRPL55-215ENST00000366742 630 ntAPPRIS P1 TSL 2 BASIC13.76□□□□□ -0.21
LTBQ06643 C10orf62-201ENST00000370640 1208 ntAPPRIS P1 BASIC13.76□□□□□ -0.21
LTBQ06643 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
LTBQ06643 DBNDD2-208ENST00000372723 1118 ntAPPRIS P1 TSL 2 BASIC13.76□□□□□ -0.21
LTBQ06643 ELK2AP-201ENST00000392510 1007 ntBASIC13.76□□□□□ -0.21
LTBQ06643 TRIM74-202ENST00000395244 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
LTBQ06643 TRIM73-204ENST00000447409 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
LTBQ06643 CGB8-201ENST00000448456 882 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
LTBQ06643 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
LTBQ06643 C11orf98-201ENST00000524958 654 ntAPPRIS P1 TSL 2 BASIC13.76□□□□□ -0.21
LTBQ06643 TMEM218-210ENST00000529609 734 ntTSL 3 BASIC13.76□□□□□ -0.21
LTBQ06643 AC055876.2-201ENST00000531834 546 ntBASIC13.76□□□□□ -0.21
LTBQ06643 USB1-203ENST00000539737 1212 ntTSL 2 BASIC13.76□□□□□ -0.21
LTBQ06643 AL163974.1-201ENST00000554540 466 ntTSL 5 BASIC13.76□□□□□ -0.21
LTBQ06643 MRPL52-216ENST00000557221 922 ntTSL 2 BASIC13.76□□□□□ -0.21
LTBQ06643 WASH4P-201ENST00000564273 1246 ntBASIC13.76□□□□□ -0.21
LTBQ06643 CHCHD2P3-201ENST00000603038 451 ntBASIC13.76□□□□□ -0.21
LTBQ06643 ZMYND15-204ENST00000573751 2409 ntTSL 2 BASIC13.76□□□□□ -0.21
LTBQ06643 IRF2BP2-201ENST00000366609 4663 ntAPPRIS P3 TSL 1 (best) BASIC13.76□□□□□ -0.21
LTBQ06643 SMARCA4-214ENST00000589677 5181 ntAPPRIS ALT1 TSL 5 BASIC13.76□□□□□ -0.21
LTBQ06643 MAGEA2-209ENST00000623806 2025 ntAPPRIS P1 TSL 2 BASIC13.76□□□□□ -0.21
LTBQ06643 FGD2-201ENST00000274963 3046 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
LTBQ06643 SRSF8-201ENST00000587424 4028 ntAPPRIS P1 BASIC13.76□□□□□ -0.21
LTBQ06643 NAP1L1-202ENST00000393263 1896 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
LTBQ06643 IDH2-201ENST00000330062 2694 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
LTBQ06643 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC13.76□□□□□ -0.21
LTBQ06643 CYLD-202ENST00000398568 3536 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 75.9 ms