Protein–RNA interactions for Protein: P61024

CKS1B, Cyclin-dependent kinases regulatory subunit 1, humanhuman

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP61024 TNRC6C-207ENST00000588847 8527 ntAPPRIS P4 TSL 5 BASIC10.66□□□□□ -0.7
CKS1BP61024 ADORA2A-AS1-201ENST00000326341 2557 ntTSL 5 BASIC10.66□□□□□ -0.7
CKS1BP61024 AL031719.1-201ENST00000623365 2587 ntBASIC10.66□□□□□ -0.7
CKS1BP61024 TNRC6C-205ENST00000588061 8419 ntAPPRIS ALT2 TSL 5 BASIC10.66□□□□□ -0.7
CKS1BP61024 TMC8-201ENST00000318430 4411 ntAPPRIS P2 TSL 1 (best) BASIC10.66□□□□□ -0.7
CKS1BP61024 SLC3A1-205ENST00000409387 2334 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
CKS1BP61024 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC10.66□□□□□ -0.7
CKS1BP61024 CALML3-201ENST00000315238 2763 ntAPPRIS P1 BASIC10.65□□□□□ -0.7
CKS1BP61024 NFKBIZ-202ENST00000326172 3923 ntAPPRIS P3 TSL 1 (best) BASIC10.65□□□□□ -0.7
CKS1BP61024 AL805961.2-201ENST00000642139 4817 ntBASIC10.65□□□□□ -0.7
CKS1BP61024 INTS6-201ENST00000311234 3662 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
CKS1BP61024 BCKDHB-201ENST00000320393 3692 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
CKS1BP61024 TLE3-211ENST00000557997 3683 ntAPPRIS ALT1 TSL 1 (best) BASIC10.65□□□□□ -0.7
CKS1BP61024 ZNF148-206ENST00000485866 2960 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
CKS1BP61024 CEP70-213ENST00000489254 1811 ntAPPRIS ALT2 TSL 2 BASIC10.65□□□□□ -0.7
CKS1BP61024 C3orf20-202ENST00000412910 2744 ntAPPRIS ALT2 TSL 1 (best) BASIC10.65□□□□□ -0.7
CKS1BP61024 NUTM2E-202ENST00000602967 3623 ntAPPRIS ALT2 TSL 5 BASIC10.65□□□□□ -0.7
CKS1BP61024 ABCB9-203ENST00000346530 3399 ntTSL 5 BASIC10.65□□□□□ -0.7
CKS1BP61024 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
CKS1BP61024 NEDD4L-202ENST00000356462 3335 ntTSL 1 (best) BASIC10.65□□□□□ -0.7
CKS1BP61024 IMPDH1-201ENST00000338791 2881 ntTSL 2 BASIC10.65□□□□□ -0.7
CKS1BP61024 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC10.65□□□□□ -0.7
CKS1BP61024 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC10.65□□□□□ -0.7
CKS1BP61024 BEND3P3-201ENST00000611030 2440 ntBASIC10.65□□□□□ -0.7
CKS1BP61024 AC007240.1-201ENST00000641498 1996 ntAPPRIS P1 BASIC10.65□□□□□ -0.7
CKS1BP61024 SGMS1-202ENST00000361781 3744 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
CKS1BP61024 AP001062.1-201ENST00000448927 4354 ntTSL 2 BASIC10.65□□□□□ -0.7
CKS1BP61024 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC10.65□□□□□ -0.7
CKS1BP61024 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC10.65□□□□□ -0.7
CKS1BP61024 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC10.65□□□□□ -0.7
CKS1BP61024 MED22-202ENST00000371999 987 ntTSL 3 BASIC10.65□□□□□ -0.7
CKS1BP61024 NME2-201ENST00000393183 568 ntTSL 2 BASIC10.65□□□□□ -0.7
CKS1BP61024 CENPM-204ENST00000402420 688 ntTSL 5 BASIC10.65□□□□□ -0.7
CKS1BP61024 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC10.65□□□□□ -0.7
CKS1BP61024 VN2R19P-201ENST00000442399 1052 ntBASIC10.65□□□□□ -0.7
CKS1BP61024 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC10.65□□□□□ -0.7
CKS1BP61024 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC10.65□□□□□ -0.7
CKS1BP61024 THTPA-204ENST00000554970 569 ntTSL 4 BASIC10.65□□□□□ -0.7
CKS1BP61024 THTPA-206ENST00000556015 535 ntTSL 3 BASIC10.65□□□□□ -0.7
CKS1BP61024 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC10.65□□□□□ -0.7
CKS1BP61024 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC10.65□□□□□ -0.7
CKS1BP61024 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC10.65□□□□□ -0.7
CKS1BP61024 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC10.65□□□□□ -0.7
CKS1BP61024 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC10.65□□□□□ -0.7
CKS1BP61024 AC023141.13-201ENST00000604991 943 ntBASIC10.65□□□□□ -0.7
CKS1BP61024 AL161645.1-201ENST00000622716 1255 ntBASIC10.65□□□□□ -0.7
CKS1BP61024 AC117500.6-201ENST00000624871 588 ntBASIC10.65□□□□□ -0.7
CKS1BP61024 AC005865.2-203ENST00000636557 2959 ntTSL 5 BASIC10.65□□□□□ -0.7
CKS1BP61024 RRAGD-201ENST00000359203 4042 ntTSL 2 BASIC10.65□□□□□ -0.7
CKS1BP61024 ZNF576-203ENST00000525771 2327 ntAPPRIS P1 TSL 2 BASIC10.65□□□□□ -0.7
CKS1BP61024 LINC02396-202ENST00000550636 2324 ntTSL 2 BASIC10.65□□□□□ -0.7
CKS1BP61024 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC10.65□□□□□ -0.7
CKS1BP61024 CAMKV-201ENST00000296471 2913 ntTSL 1 (best) BASIC10.65□□□□□ -0.7
CKS1BP61024 CAMKV-215ENST00000488336 2905 ntTSL 2 BASIC10.65□□□□□ -0.7
CKS1BP61024 PHF2-203ENST00000610682 2921 ntTSL 5 BASIC10.65□□□□□ -0.7
CKS1BP61024 SNX14-203ENST00000369627 3111 ntTSL 1 (best) BASIC10.65□□□□□ -0.7
CKS1BP61024 SMPDL3B-202ENST00000373894 1878 ntAPPRIS P4 TSL 1 (best) BASIC10.65□□□□□ -0.7
CKS1BP61024 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
CKS1BP61024 KDM6A-214ENST00000621147 2876 ntTSL 1 (best) BASIC10.65□□□□□ -0.7
CKS1BP61024 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC10.65□□□□□ -0.7
CKS1BP61024 NPHS1-202ENST00000378910 4276 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
CKS1BP61024 SEC31A-208ENST00000448323 4255 ntAPPRIS P4 TSL 5 BASIC10.65□□□□□ -0.7
CKS1BP61024 GFRA1-203ENST00000369236 9109 ntAPPRIS P3 TSL 1 (best) BASIC10.65□□□□□ -0.71
CKS1BP61024 NEAT1-201ENST00000499732 1811 ntTSL 2 BASIC10.65□□□□□ -0.71
CKS1BP61024 AZGP1-202ENST00000411734 2027 ntTSL 1 (best) BASIC10.65□□□□□ -0.71
CKS1BP61024 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC10.65□□□□□ -0.71
CKS1BP61024 HTR3A-205ENST00000504030 2432 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.71
CKS1BP61024 SPHK2-201ENST00000245222 2963 ntAPPRIS P3 TSL 1 (best) BASIC10.65□□□□□ -0.71
CKS1BP61024 ST3GAL1-211ENST00000522652 2580 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.71
CKS1BP61024 LINC00940-201ENST00000418006 2350 ntTSL 2 BASIC10.65□□□□□ -0.71
CKS1BP61024 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC10.65□□□□□ -0.71
CKS1BP61024 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC10.65□□□□□ -0.71
CKS1BP61024 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC10.65□□□□□ -0.71
CKS1BP61024 AC023632.2-201ENST00000523011 1789 ntTSL 2 BASIC10.65□□□□□ -0.71
CKS1BP61024 SPG11-203ENST00000535302 7288 ntAPPRIS ALT2 TSL 1 (best) BASIC10.65□□□□□ -0.71
CKS1BP61024 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.71
CKS1BP61024 TMPRSS12-202ENST00000551456 3336 ntTSL 2 BASIC10.64□□□□□ -0.71
CKS1BP61024 HJURP-207ENST00000441687 2934 ntAPPRIS ALT2 TSL 2 BASIC10.64□□□□□ -0.71
CKS1BP61024 AC022497.1-201ENST00000624916 3691 ntBASIC10.64□□□□□ -0.71
CKS1BP61024 ORMDL3-204ENST00000579695 2106 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
CKS1BP61024 SLC35G1-201ENST00000371408 3490 ntAPPRIS P3 TSL 2 BASIC10.64□□□□□ -0.71
CKS1BP61024 SH3BP2-203ENST00000442312 9211 ntAPPRIS ALT2 TSL 2 BASIC10.64□□□□□ -0.71
CKS1BP61024 GPR161-209ENST00000539777 7655 ntTSL 2 BASIC10.64□□□□□ -0.71
CKS1BP61024 KCNJ5-202ENST00000529694 5940 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
CKS1BP61024 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
CKS1BP61024 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC10.64□□□□□ -0.71
CKS1BP61024 IFT57-201ENST00000264538 3203 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
CKS1BP61024 CEP78-205ENST00000424347 11198 ntAPPRIS ALT2 TSL 5 BASIC10.64□□□□□ -0.71
CKS1BP61024 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
CKS1BP61024 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
CKS1BP61024 CCBE1-202ENST00000439986 6227 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
CKS1BP61024 GRIN1-202ENST00000371546 4114 ntTSL 5 BASIC10.64□□□□□ -0.71
CKS1BP61024 RBM15-203ENST00000602849 3368 ntAPPRIS P1 BASIC10.64□□□□□ -0.71
CKS1BP61024 FLNA-204ENST00000369856 8241 ntAPPRIS ALT2 TSL 1 (best) BASIC10.64□□□□□ -0.71
CKS1BP61024 STARD8-203ENST00000374599 4841 ntAPPRIS ALT2 TSL 1 (best) BASIC10.64□□□□□ -0.71
CKS1BP61024 SGK2-204ENST00000373100 2225 ntAPPRIS P1 TSL 5 BASIC10.64□□□□□ -0.71
CKS1BP61024 PRKCSH-212ENST00000591462 2209 ntAPPRIS ALT2 TSL 5 BASIC10.64□□□□□ -0.71
CKS1BP61024 KIAA1683-201ENST00000392413 4402 ntAPPRIS ALT2 TSL 1 (best) BASIC10.64□□□□□ -0.71
CKS1BP61024 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC10.64□□□□□ -0.71
CKS1BP61024 MRPS21-201ENST00000581066 1462 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
Retrieved 100 of 98,524 protein–RNA pairs in 89.1 ms