Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 PDE4A-209ENST00000592685 2707 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
FOXA1P55317 ALDH8A1-204ENST00000367847 1587 ntTSL 2 BASIC14.56□□□□□ -0.08
FOXA1P55317 CDC37-201ENST00000222005 1608 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
FOXA1P55317 IQCE-203ENST00000402050 6844 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
FOXA1P55317 GAS2L2-202ENST00000604641 3014 ntAPPRIS P2 TSL 1 (best) BASIC14.55□□□□□ -0.08
FOXA1P55317 KCNT1-209ENST00000490355 3708 ntAPPRIS ALT2 TSL 5 BASIC14.55□□□□□ -0.08
FOXA1P55317 ZKSCAN4-201ENST00000377294 2375 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
FOXA1P55317 TPM1-206ENST00000358278 1717 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
FOXA1P55317 PAPSS2-202ENST00000456849 3856 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
FOXA1P55317 HORMAD1-201ENST00000322343 1771 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
FOXA1P55317 HLF-201ENST00000226067 5547 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
FOXA1P55317 GNAO1-201ENST00000262493 3337 ntAPPRIS P5 TSL 1 (best) BASIC14.55□□□□□ -0.08
FOXA1P55317 ATP6AP2-213ENST00000636251 1877 ntAPPRIS ALT2 TSL 5 BASIC14.55□□□□□ -0.08
FOXA1P55317 GSG1L-203ENST00000447459 4916 ntAPPRIS P3 TSL 2 BASIC14.55□□□□□ -0.08
FOXA1P55317 ZNF451-201ENST00000357489 4998 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
FOXA1P55317 CERS3-202ENST00000394113 2045 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
FOXA1P55317 ZNF846-201ENST00000397902 2016 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
FOXA1P55317 CEP76-201ENST00000262127 2939 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
FOXA1P55317 ZW10-201ENST00000200135 2992 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
FOXA1P55317 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
FOXA1P55317 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
FOXA1P55317 SAR1A-204ENST00000373241 2996 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
FOXA1P55317 ING1-204ENST00000375775 1074 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
FOXA1P55317 TEX30-203ENST00000376022 828 ntTSL 2 BASIC14.55□□□□□ -0.08
FOXA1P55317 PIR-201ENST00000380420 1282 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
FOXA1P55317 METTL26-204ENST00000397665 558 ntTSL 2 BASIC14.55□□□□□ -0.08
FOXA1P55317 AC073133.1-201ENST00000426187 432 ntTSL 3 BASIC14.55□□□□□ -0.08
FOXA1P55317 AL121601.1-201ENST00000426367 326 ntTSL 2 BASIC14.55□□□□□ -0.08
FOXA1P55317 DLX2-AS1-201ENST00000448117 950 ntTSL 5 BASIC14.55□□□□□ -0.08
FOXA1P55317 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC14.55□□□□□ -0.08
FOXA1P55317 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC14.55□□□□□ -0.08
FOXA1P55317 RIC8B-209ENST00000549643 571 ntTSL 4 BASIC14.55□□□□□ -0.08
FOXA1P55317 AC125603.3-201ENST00000550742 486 ntTSL 3 BASIC14.55□□□□□ -0.08
FOXA1P55317 AC005520.2-201ENST00000556194 573 ntTSL 2 BASIC14.55□□□□□ -0.08
FOXA1P55317 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
FOXA1P55317 ELOF1-206ENST00000590700 585 ntAPPRIS P1 TSL 3 BASIC14.55□□□□□ -0.08
FOXA1P55317 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC14.55□□□□□ -0.08
FOXA1P55317 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC14.55□□□□□ -0.08
FOXA1P55317 AC007431.3-201ENST00000623221 587 ntBASIC14.55□□□□□ -0.08
FOXA1P55317 PRF1-203ENST00000638674 1080 ntTSL 5 BASIC14.55□□□□□ -0.08
FOXA1P55317 MLF1-201ENST00000355893 2203 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
FOXA1P55317 ZDHHC3-201ENST00000296127 3101 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
FOXA1P55317 TNS2-201ENST00000314250 5010 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
FOXA1P55317 XPNPEP1-201ENST00000322238 2467 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
FOXA1P55317 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC14.55□□□□□ -0.08
FOXA1P55317 P2RY4-201ENST00000374519 1595 ntAPPRIS P1 BASIC14.55□□□□□ -0.08
FOXA1P55317 RUFY1-204ENST00000437570 2642 ntAPPRIS ALT2 TSL 2 BASIC14.55□□□□□ -0.08
FOXA1P55317 ASPH-202ENST00000379449 1603 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
FOXA1P55317 SLC25A35-201ENST00000380067 2785 ntTSL 2 BASIC14.55□□□□□ -0.08
FOXA1P55317 HBP1-201ENST00000222574 2829 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
FOXA1P55317 HSD17B6-205ENST00000554643 1751 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
FOXA1P55317 CSF1-201ENST00000329608 4210 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
FOXA1P55317 PHAX-201ENST00000297540 4288 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
FOXA1P55317 ADK-205ENST00000539909 1866 ntTSL 2 BASIC14.55□□□□□ -0.08
FOXA1P55317 ZC3H14-204ENST00000336693 2007 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
FOXA1P55317 THY1-206ENST00000528522 2050 ntAPPRIS P1 TSL 2 BASIC14.54□□□□□ -0.08
FOXA1P55317 CALD1-206ENST00000424922 2124 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
FOXA1P55317 ZHX1-201ENST00000297857 5200 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
FOXA1P55317 ITSN1-205ENST00000381291 5437 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
FOXA1P55317 CCP110-201ENST00000381396 5446 ntAPPRIS ALT1 TSL 1 (best) BASIC14.54□□□□□ -0.08
FOXA1P55317 RABL2B-202ENST00000395590 2380 ntTSL 2 BASIC14.54□□□□□ -0.08
FOXA1P55317 GFRA1-201ENST00000355422 2583 ntAPPRIS ALT2 TSL 5 BASIC14.54□□□□□ -0.08
FOXA1P55317 TFDP1-201ENST00000375370 2648 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
FOXA1P55317 CNTNAP3-202ENST00000358144 4885 ntTSL 5 BASIC14.54□□□□□ -0.08
FOXA1P55317 MRC2-202ENST00000446119 3201 ntTSL 2 BASIC14.54□□□□□ -0.08
FOXA1P55317 GLB1L2-205ENST00000535456 3365 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
FOXA1P55317 FGFR1-204ENST00000356207 3824 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
FOXA1P55317 C2orf15-202ENST00000409684 1058 ntAPPRIS P1 TSL 3 BASIC14.54□□□□□ -0.08
FOXA1P55317 LSM5-207ENST00000410044 687 ntTSL 3 BASIC14.54□□□□□ -0.08
FOXA1P55317 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC14.54□□□□□ -0.08
FOXA1P55317 NUS1P3-201ENST00000423502 862 ntBASIC14.54□□□□□ -0.08
FOXA1P55317 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
FOXA1P55317 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
FOXA1P55317 AC007364.1-201ENST00000449714 1022 ntTSL 2 BASIC14.54□□□□□ -0.08
FOXA1P55317 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
FOXA1P55317 CD81-207ENST00000481687 890 ntTSL 2 BASIC14.54□□□□□ -0.08
FOXA1P55317 RPL13AP25-201ENST00000484130 612 ntBASIC14.54□□□□□ -0.08
FOXA1P55317 AC093214.1-201ENST00000511688 1107 ntBASIC14.54□□□□□ -0.08
FOXA1P55317 FADS2-205ENST00000517839 469 ntTSL 3 BASIC14.54□□□□□ -0.08
FOXA1P55317 AP001582.1-201ENST00000525856 295 ntBASIC14.54□□□□□ -0.08
FOXA1P55317 NEIL2-207ENST00000528323 998 ntTSL 2 BASIC14.54□□□□□ -0.08
FOXA1P55317 AC124283.3-201ENST00000570869 594 ntBASIC14.54□□□□□ -0.08
FOXA1P55317 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
FOXA1P55317 SYT9-201ENST00000318881 3955 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
FOXA1P55317 ELL-201ENST00000262809 4027 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
FOXA1P55317 AP4E1-201ENST00000261842 6758 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
FOXA1P55317 AL590132.1-202ENST00000638983 4184 ntTSL 5 BASIC14.54□□□□□ -0.08
FOXA1P55317 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
FOXA1P55317 LTA-214ENST00000454783 1507 ntAPPRIS P1 TSL 2 BASIC14.54□□□□□ -0.08
FOXA1P55317 PSMD13-203ENST00000431206 1591 ntTSL 2 BASIC14.54□□□□□ -0.08
FOXA1P55317 SELPLG-201ENST00000228463 1704 ntAPPRIS ALT2 TSL 2 BASIC14.54□□□□□ -0.08
FOXA1P55317 PCBP2-202ENST00000359462 1814 ntAPPRIS ALT1 TSL 1 (best) BASIC14.54□□□□□ -0.08
FOXA1P55317 NMNAT3-202ENST00000339837 1863 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
FOXA1P55317 LRRC17-202ENST00000339431 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
FOXA1P55317 LMAN2L-201ENST00000264963 2397 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
FOXA1P55317 PAK1-201ENST00000278568 2543 ntTSL 2 BASIC14.54□□□□□ -0.08
FOXA1P55317 MSH5-201ENST00000375703 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
FOXA1P55317 MFAP3-201ENST00000322602 2891 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
FOXA1P55317 ARVCF-203ENST00000406259 2871 ntAPPRIS ALT2 TSL 5 BASIC14.54□□□□□ -0.08
FOXA1P55317 FAM160A2-202ENST00000449352 3354 ntAPPRIS ALT1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 52.4 ms