Protein–RNA interactions for Protein: P55289

CDH12, Cadherin-12, humanhuman

Predictions only

Length 794 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH12P55289 KBTBD4-202ENST00000430070 2372 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
CDH12P55289 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC14.08□□□□□ -0.16
CDH12P55289 ARHGAP45-206ENST00000586866 4120 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
CDH12P55289 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
CDH12P55289 FUK-202ENST00000378912 3925 ntTSL 2 BASIC14.08□□□□□ -0.16
CDH12P55289 NUCB1-201ENST00000405315 2668 ntAPPRIS P2 TSL 1 (best) BASIC14.08□□□□□ -0.16
CDH12P55289 POU6F1-208ENST00000550824 2664 ntTSL 5 BASIC14.08□□□□□ -0.16
CDH12P55289 ICA1-207ENST00000406470 2440 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
CDH12P55289 SCAF11-204ENST00000395454 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
CDH12P55289 CCP110-203ENST00000396212 5549 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
CDH12P55289 UBR2-201ENST00000372899 7857 ntAPPRIS P2 TSL 1 (best) BASIC14.07□□□□□ -0.16
CDH12P55289 UBR2-202ENST00000372901 7857 ntAPPRIS ALT1 TSL 5 BASIC14.07□□□□□ -0.16
CDH12P55289 ACOT7-210ENST00000608083 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
CDH12P55289 WDR27-201ENST00000423258 2465 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
CDH12P55289 SLC25A18-201ENST00000327451 2244 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CDH12P55289 ORMDL3-202ENST00000394169 2230 ntAPPRIS P1 TSL 2 BASIC14.07□□□□□ -0.16
CDH12P55289 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
CDH12P55289 KCNH4-201ENST00000264661 3920 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CDH12P55289 SLC19A2-201ENST00000236137 3671 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CDH12P55289 ADAMTS7P1-201ENST00000613213 4793 ntBASIC14.07□□□□□ -0.16
CDH12P55289 SRSF2-203ENST00000392485 2885 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CDH12P55289 TRIM65-201ENST00000269383 3439 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CDH12P55289 SETD6-203ENST00000394266 3423 ntTSL 5 BASIC14.07□□□□□ -0.16
CDH12P55289 OGFOD3-201ENST00000313056 4287 ntAPPRIS P1 TSL 2 BASIC14.07□□□□□ -0.16
CDH12P55289 ACSM1-201ENST00000307493 2051 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CDH12P55289 ATP6V1H-201ENST00000355221 2365 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
CDH12P55289 GCLC-201ENST00000229416 3813 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CDH12P55289 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC14.07□□□□□ -0.16
CDH12P55289 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC14.07□□□□□ -0.16
CDH12P55289 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
CDH12P55289 MIR943-201ENST00000401286 94 ntBASIC14.07□□□□□ -0.16
CDH12P55289 PES1-204ENST00000402284 2144 ntTSL 5 BASIC14.07□□□□□ -0.16
CDH12P55289 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC14.07□□□□□ -0.16
CDH12P55289 URGCP-206ENST00000446958 365 ntTSL 2 BASIC14.07□□□□□ -0.16
CDH12P55289 CDYL-205ENST00000449732 2139 ntTSL 2 BASIC14.07□□□□□ -0.16
CDH12P55289 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CDH12P55289 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
CDH12P55289 PEX5L-215ENST00000485199 2992 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
CDH12P55289 TIMM17BP1-201ENST00000545713 516 ntBASIC14.07□□□□□ -0.16
CDH12P55289 AC108134.3-202ENST00000571404 1207 ntTSL 5 BASIC14.07□□□□□ -0.16
CDH12P55289 SAMD11P1-201ENST00000571429 661 ntBASIC14.07□□□□□ -0.16
CDH12P55289 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC14.07□□□□□ -0.16
CDH12P55289 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC14.07□□□□□ -0.16
CDH12P55289 5S_rRNA.22-201ENST00000614916 106 ntBASIC14.07□□□□□ -0.16
CDH12P55289 GPR39-203ENST00000622084 900 ntTSL 5 BASIC14.07□□□□□ -0.16
CDH12P55289 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC14.07□□□□□ -0.16
CDH12P55289 TCEAL4-209ENST00000472745 1571 ntAPPRIS P3 TSL 5 BASIC14.07□□□□□ -0.16
CDH12P55289 KIFC3-207ENST00000543930 3018 ntTSL 2 BASIC14.07□□□□□ -0.16
CDH12P55289 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
CDH12P55289 GPAT4-201ENST00000396987 6298 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CDH12P55289 ZMYM3-206ENST00000373988 6021 ntAPPRIS ALT1 TSL 5 BASIC14.07□□□□□ -0.16
CDH12P55289 PRKD1-202ENST00000415220 3189 ntAPPRIS ALT2 TSL 5 BASIC14.07□□□□□ -0.16
CDH12P55289 CNOT3-201ENST00000221232 2852 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CDH12P55289 CHRDL1-204ENST00000444321 1658 ntAPPRIS ALT1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CDH12P55289 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
CDH12P55289 BRAT1-201ENST00000340611 2915 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CDH12P55289 GRM7-215ENST00000486284 4241 ntAPPRIS ALT2 TSL 5 BASIC14.07□□□□□ -0.16
CDH12P55289 PLTP-201ENST00000354050 1731 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
CDH12P55289 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
CDH12P55289 PSMD9-207ENST00000541212 2784 ntAPPRIS P2 TSL 1 (best) BASIC14.06□□□□□ -0.16
CDH12P55289 GPN1-201ENST00000264718 2496 ntAPPRIS P2 TSL 1 (best) BASIC14.06□□□□□ -0.16
CDH12P55289 NOX5-203ENST00000448182 2498 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
CDH12P55289 EVC2-201ENST00000310917 4828 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
CDH12P55289 CDK17-201ENST00000261211 4157 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CDH12P55289 S1PR2-201ENST00000590320 3582 ntAPPRIS P1 TSL 3 BASIC14.06□□□□□ -0.16
CDH12P55289 INPPL1-213ENST00000541756 4649 ntTSL 5 BASIC14.06□□□□□ -0.16
CDH12P55289 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC14.06□□□□□ -0.16
CDH12P55289 AAK1-202ENST00000409068 2606 ntTSL 2 BASIC14.06□□□□□ -0.16
CDH12P55289 MIRLET7BHG-203ENST00000435439 2264 ntTSL 2 BASIC14.06□□□□□ -0.16
CDH12P55289 NLRX1-204ENST00000409991 3716 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CDH12P55289 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CDH12P55289 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
CDH12P55289 TBC1D8-202ENST00000409318 3803 ntTSL 5 BASIC14.06□□□□□ -0.16
CDH12P55289 AC114501.2-201ENST00000439631 535 ntBASIC14.06□□□□□ -0.16
CDH12P55289 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC14.06□□□□□ -0.16
CDH12P55289 IGHV3-42-201ENST00000520410 361 ntBASIC14.06□□□□□ -0.16
CDH12P55289 PNOC-204ENST00000522209 1007 ntTSL 2 BASIC14.06□□□□□ -0.16
CDH12P55289 DUX4L27-201ENST00000554796 1261 ntBASIC14.06□□□□□ -0.16
CDH12P55289 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
CDH12P55289 AC000095.1-201ENST00000603208 874 ntBASIC14.06□□□□□ -0.16
CDH12P55289 RPL23AP53-203ENST00000606975 736 ntTSL 2 BASIC14.06□□□□□ -0.16
CDH12P55289 TATDN3-202ENST00000366974 2389 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
CDH12P55289 DRC3-203ENST00000399187 2008 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CDH12P55289 PLIN4-202ENST00000633942 6484 ntAPPRIS ALT2 TSL 5 BASIC14.06□□□□□ -0.16
CDH12P55289 COL1A2-201ENST00000297268 5411 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CDH12P55289 FAM219B-201ENST00000357635 3550 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CDH12P55289 CLEC12A-AS1-201ENST00000420905 3956 ntTSL 2 BASIC14.06□□□□□ -0.16
CDH12P55289 PMPCB-201ENST00000249269 2472 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CDH12P55289 ZFP64-201ENST00000216923 3264 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
CDH12P55289 TNFRSF1B-201ENST00000376259 3683 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CDH12P55289 UVRAG-201ENST00000356136 4123 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CDH12P55289 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
CDH12P55289 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
CDH12P55289 AC055811.4-201ENST00000624039 1754 ntBASIC14.06□□□□□ -0.16
CDH12P55289 LLGL1-201ENST00000316843 4260 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
CDH12P55289 CIART-203ENST00000369095 1433 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
CDH12P55289 GRIN1-203ENST00000371550 3940 ntTSL 5 BASIC14.06□□□□□ -0.16
CDH12P55289 NMNAT3-202ENST00000339837 1863 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
CDH12P55289 GOLGA8M-201ENST00000563027 1899 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
CDH12P55289 ATE1-202ENST00000369040 4803 ntTSL 2 BASIC14.06□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 67.7 ms