Protein–RNA interactions for Protein: P55055

NR1H2, Oxysterols receptor LXR-beta, humanhuman

Predictions only

Length 460 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NR1H2P55055 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
NR1H2P55055 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
NR1H2P55055 UBAC2-AS1-201ENST00000426037 1771 ntTSL 2 BASIC14.37□□□□□ -0.11
NR1H2P55055 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
NR1H2P55055 PARP3-203ENST00000431474 2360 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
NR1H2P55055 ACADM-218ENST00000541113 2535 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
NR1H2P55055 CFAP74-209ENST00000493964 5247 ntAPPRIS P5 TSL 5 BASIC14.37□□□□□ -0.11
NR1H2P55055 SNAP91-213ENST00000521485 4521 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
NR1H2P55055 TRMT10C-201ENST00000309922 1819 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
NR1H2P55055 LINC01873-201ENST00000428647 1679 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
NR1H2P55055 CHD1-212ENST00000614616 8095 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
NR1H2P55055 DENND3-202ENST00000424248 4740 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
NR1H2P55055 GLB1L2-205ENST00000535456 3365 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
NR1H2P55055 NPRL3-212ENST00000620134 3203 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
NR1H2P55055 SORCS2-201ENST00000329016 5582 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
NR1H2P55055 MOCS3-201ENST00000244051 5106 ntAPPRIS P1 BASIC14.36□□□□□ -0.11
NR1H2P55055 KARS-201ENST00000302445 2005 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
NR1H2P55055 GPN2-202ENST00000374135 4678 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
NR1H2P55055 SCNN1A-201ENST00000228916 3135 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
NR1H2P55055 CRELD1-203ENST00000397170 1728 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
NR1H2P55055 NTRK3-AS1-201ENST00000569588 2663 ntTSL 2 BASIC14.36□□□□□ -0.11
NR1H2P55055 PCDHGA3-203ENST00000619750 2695 ntAPPRIS ALT2 BASIC14.36□□□□□ -0.11
NR1H2P55055 KLHL34-201ENST00000379499 3641 ntAPPRIS P1 BASIC14.36□□□□□ -0.11
NR1H2P55055 DNAJB6-201ENST00000262177 2527 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
NR1H2P55055 PTPN23-201ENST00000265562 5244 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
NR1H2P55055 DNAJA1-201ENST00000330899 2381 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
NR1H2P55055 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
NR1H2P55055 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC14.36□□□□□ -0.11
NR1H2P55055 CENPM-205ENST00000404067 905 ntTSL 3 BASIC14.36□□□□□ -0.11
NR1H2P55055 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC14.36□□□□□ -0.11
NR1H2P55055 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC14.36□□□□□ -0.11
NR1H2P55055 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC14.36□□□□□ -0.11
NR1H2P55055 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
NR1H2P55055 RAD51D-205ENST00000460118 1064 ntTSL 5 BASIC14.36□□□□□ -0.11
NR1H2P55055 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC14.36□□□□□ -0.11
NR1H2P55055 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC14.36□□□□□ -0.11
NR1H2P55055 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC14.36□□□□□ -0.11
NR1H2P55055 DKKL1-202ENST00000594268 524 ntAPPRIS ALT2 TSL 2 BASIC14.36□□□□□ -0.11
NR1H2P55055 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
NR1H2P55055 ACAN-202ENST00000439576 8840 ntAPPRIS P2 TSL 5 BASIC14.36□□□□□ -0.11
NR1H2P55055 BIRC5-203ENST00000374948 2446 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
NR1H2P55055 RAB6C-201ENST00000410061 3075 ntAPPRIS P1 BASIC14.36□□□□□ -0.11
NR1H2P55055 KYAT1-202ENST00000320665 1623 ntTSL 2 BASIC14.36□□□□□ -0.11
NR1H2P55055 GABPB1-202ENST00000359031 1633 ntTSL 5 BASIC14.36□□□□□ -0.11
NR1H2P55055 TGFBR3-204ENST00000465892 2908 ntAPPRIS ALT1 TSL 1 (best) BASIC14.36□□□□□ -0.11
NR1H2P55055 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC14.36□□□□□ -0.11
NR1H2P55055 POFUT1-202ENST00000375749 5235 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
NR1H2P55055 MKNK1-203ENST00000371945 2618 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
NR1H2P55055 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC14.36□□□□□ -0.11
NR1H2P55055 SMYD1-203ENST00000444564 1816 ntTSL 5 BASIC14.36□□□□□ -0.11
NR1H2P55055 CAMKV-202ENST00000463537 2818 ntTSL 5 BASIC14.36□□□□□ -0.11
NR1H2P55055 NARF-206ENST00000457415 1668 ntTSL 5 BASIC14.36□□□□□ -0.11
NR1H2P55055 GRAMD4P3-201ENST00000621665 1669 ntBASIC14.36□□□□□ -0.11
NR1H2P55055 TNK1-207ENST00000576812 3023 ntAPPRIS ALT1 TSL 1 (best) BASIC14.36□□□□□ -0.11
NR1H2P55055 DAGLB-201ENST00000297056 2897 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
NR1H2P55055 ATP8B3-201ENST00000310127 5095 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
NR1H2P55055 LINC02538-201ENST00000609107 4569 ntTSL 2 BASIC14.36□□□□□ -0.11
NR1H2P55055 DENND1C-202ENST00000543576 2395 ntAPPRIS ALT2 TSL 2 BASIC14.36□□□□□ -0.11
NR1H2P55055 STIP1-203ENST00000358794 2743 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
NR1H2P55055 ARSH-201ENST00000381130 1875 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
NR1H2P55055 ZMYND15-204ENST00000573751 2409 ntTSL 2 BASIC14.35□□□□□ -0.11
NR1H2P55055 NLRP13-201ENST00000342929 3132 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
NR1H2P55055 GPAT4-201ENST00000396987 6298 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
NR1H2P55055 C7orf57-204ENST00000435376 1925 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
NR1H2P55055 C7orf57-206ENST00000539619 1927 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
NR1H2P55055 ARAP3-201ENST00000239440 5250 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
NR1H2P55055 SYNPO2L-202ENST00000394810 4921 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
NR1H2P55055 DMBT1P1-203ENST00000636837 4628 ntBASIC14.35□□□□□ -0.11
NR1H2P55055 NAXD-201ENST00000309957 2659 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
NR1H2P55055 CASC2-202ENST00000426021 3232 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
NR1H2P55055 ZBTB1-201ENST00000358738 4119 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
NR1H2P55055 TNFRSF11A-206ENST00000617039 3756 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
NR1H2P55055 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC14.35□□□□□ -0.11
NR1H2P55055 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
NR1H2P55055 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
NR1H2P55055 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC14.35□□□□□ -0.11
NR1H2P55055 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC14.35□□□□□ -0.11
NR1H2P55055 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC14.35□□□□□ -0.11
NR1H2P55055 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC14.35□□□□□ -0.11
NR1H2P55055 NAA60-208ENST00000570819 833 ntTSL 2 BASIC14.35□□□□□ -0.11
NR1H2P55055 AC073389.1-201ENST00000595595 795 ntBASIC14.35□□□□□ -0.11
NR1H2P55055 LCN8-205ENST00000612714 638 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
NR1H2P55055 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
NR1H2P55055 HELZ2-204ENST00000467148 8064 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
NR1H2P55055 MEAF6-203ENST00000373074 2005 ntTSL 2 BASIC14.35□□□□□ -0.11
NR1H2P55055 GOLGA2P7-207ENST00000559668 4253 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
NR1H2P55055 THBD-201ENST00000377103 4109 ntAPPRIS P1 BASIC14.35□□□□□ -0.11
NR1H2P55055 SFSWAP-210ENST00000541286 3219 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
NR1H2P55055 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC14.35□□□□□ -0.11
NR1H2P55055 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
NR1H2P55055 SEPT6-201ENST00000343984 2693 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
NR1H2P55055 MAGEA2-204ENST00000611674 1728 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
NR1H2P55055 DLGAP1-204ENST00000400149 5203 ntTSL 5 BASIC14.35□□□□□ -0.11
NR1H2P55055 AP5Z1-201ENST00000348624 2901 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
NR1H2P55055 TET2-207ENST00000513237 10166 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
NR1H2P55055 TET2-209ENST00000540549 10166 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
NR1H2P55055 KCNJ5-203ENST00000533599 1350 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
NR1H2P55055 BCAT2-201ENST00000316273 1552 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
NR1H2P55055 DGAT2L6-201ENST00000333026 1553 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
NR1H2P55055 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC14.34□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 115.7 ms