Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 ZNF74-209ENST00000611540 3714 ntAPPRIS P2 TSL 2 BASIC14.64□□□□□ -0.07
HNF4AP41235 ZMYND10-202ENST00000360165 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC14.64□□□□□ -0.07
HNF4AP41235 ST20-AS1-201ENST00000560255 4223 ntBASIC14.64□□□□□ -0.07
HNF4AP41235 HNRNPU-201ENST00000283179 3120 ntAPPRIS ALT2 TSL 5 BASIC14.64□□□□□ -0.07
HNF4AP41235 PPP2R5C-204ENST00000422945 4481 ntTSL 2 BASIC14.64□□□□□ -0.07
HNF4AP41235 CRYBG2-210ENST00000527815 2523 ntAPPRIS ALT2 TSL 2 BASIC14.64□□□□□ -0.07
HNF4AP41235 GPSM1-202ENST00000354753 3533 ntAPPRIS ALT2 TSL 5 BASIC14.64□□□□□ -0.07
HNF4AP41235 UBA6-AS1-201ENST00000498917 1445 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
HNF4AP41235 MIF4GD-208ENST00000579297 1419 ntTSL 2 BASIC14.64□□□□□ -0.07
HNF4AP41235 PTGES3L-AARSD1-202ENST00000409103 1670 ntTSL 5 BASIC14.64□□□□□ -0.07
HNF4AP41235 RAB11FIP1-201ENST00000287263 6253 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
HNF4AP41235 AP000550.1-201ENST00000420508 4833 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
HNF4AP41235 GOPC-201ENST00000052569 4590 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
HNF4AP41235 ZBED1-201ENST00000381218 2832 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
HNF4AP41235 GLIDR-202ENST00000625350 2588 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
HNF4AP41235 CYP4F3-203ENST00000586182 2338 ntAPPRIS ALT1 TSL 2 BASIC14.64□□□□□ -0.07
HNF4AP41235 CNDP2-201ENST00000324262 5130 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
HNF4AP41235 ATXN2L-202ENST00000336783 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
HNF4AP41235 C16orf52-202ENST00000542527 4360 ntAPPRIS P1 TSL 5 BASIC14.64□□□□□ -0.07
HNF4AP41235 TMEM198B-201ENST00000471276 1958 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
HNF4AP41235 MFSD13A-201ENST00000238936 2852 ntAPPRIS P1 TSL 5 BASIC14.63□□□□□ -0.07
HNF4AP41235 PKN2-201ENST00000316005 2632 ntTSL 5 BASIC14.63□□□□□ -0.07
HNF4AP41235 CPSF7-205ENST00000439958 3524 ntAPPRIS ALT1 TSL 1 (best) BASIC14.63□□□□□ -0.07
HNF4AP41235 AGER-206ENST00000375070 1463 ntTSL 5 BASIC14.63□□□□□ -0.07
HNF4AP41235 AGER-208ENST00000438221 1493 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
HNF4AP41235 KCTD3-201ENST00000259154 3931 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
HNF4AP41235 TLX1NB-202ENST00000445873 1862 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
HNF4AP41235 COPS7B-224ENST00000620578 2500 ntTSL 2 BASIC14.63□□□□□ -0.07
HNF4AP41235 CYB561-203ENST00000392976 3151 ntAPPRIS P1 TSL 3 BASIC14.63□□□□□ -0.07
HNF4AP41235 MRPL11-201ENST00000310999 1605 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
HNF4AP41235 KHNYN-201ENST00000251343 6725 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
HNF4AP41235 ARHGAP4-202ENST00000370016 3095 ntAPPRIS ALT2 TSL 5 BASIC14.63□□□□□ -0.07
HNF4AP41235 PUDP-202ENST00000412827 1376 ntTSL 2 BASIC14.63□□□□□ -0.07
HNF4AP41235 HSPB7-202ENST00000375718 2415 ntTSL 2 BASIC14.63□□□□□ -0.07
HNF4AP41235 USP35-204ENST00000530267 2419 ntTSL 2 BASIC14.63□□□□□ -0.07
HNF4AP41235 C20orf166-AS1-203ENST00000475015 2585 ntTSL 2 BASIC14.63□□□□□ -0.07
HNF4AP41235 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
HNF4AP41235 RGS9-202ENST00000443584 2078 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
HNF4AP41235 B9D1-201ENST00000261499 908 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
HNF4AP41235 FANK1-204ENST00000368695 1296 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
HNF4AP41235 PGGT1B-202ENST00000379615 903 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
HNF4AP41235 IGHV3-16-201ENST00000390604 425 ntAPPRIS P1 BASIC14.63□□□□□ -0.07
HNF4AP41235 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC14.63□□□□□ -0.07
HNF4AP41235 MAGEA12-203ENST00000393900 1299 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
HNF4AP41235 B9D1-203ENST00000395615 805 ntTSL 3 BASIC14.63□□□□□ -0.07
HNF4AP41235 MIOX-203ENST00000395733 1021 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
HNF4AP41235 AL035633.1-201ENST00000406139 838 ntBASIC14.63□□□□□ -0.07
HNF4AP41235 AP006294.1-201ENST00000415407 339 ntBASIC14.63□□□□□ -0.07
HNF4AP41235 THPO-202ENST00000421442 1132 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
HNF4AP41235 ZNF707-203ENST00000442058 562 ntTSL 4 BASIC14.63□□□□□ -0.07
HNF4AP41235 AC140481.1-201ENST00000448777 706 ntTSL 3 BASIC14.63□□□□□ -0.07
HNF4AP41235 AC114812.1-204ENST00000449669 728 ntBASIC14.63□□□□□ -0.07
HNF4AP41235 TMEM191A-209ENST00000452055 788 ntTSL 2 BASIC14.63□□□□□ -0.07
HNF4AP41235 AC004522.2-201ENST00000456499 680 ntTSL 3 BASIC14.63□□□□□ -0.07
HNF4AP41235 RN7SL752P-201ENST00000463779 287 ntBASIC14.63□□□□□ -0.07
HNF4AP41235 LINC01585-201ENST00000500496 1295 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
HNF4AP41235 AC006064.3-201ENST00000537921 477 ntTSL 4 BASIC14.63□□□□□ -0.07
HNF4AP41235 ZSCAN2-213ENST00000541040 965 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
HNF4AP41235 GABARAPL2-202ENST00000563744 791 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
HNF4AP41235 IFT20-206ENST00000578122 834 ntTSL 2 BASIC14.63□□□□□ -0.07
HNF4AP41235 IFT20-208ENST00000578985 831 ntTSL 3 BASIC14.63□□□□□ -0.07
HNF4AP41235 LINC02084-201ENST00000606069 1096 ntBASIC14.63□□□□□ -0.07
HNF4AP41235 IL32-235ENST00000613483 1033 ntAPPRIS ALT2 TSL 5 BASIC14.63□□□□□ -0.07
HNF4AP41235 IFI27-210ENST00000616764 716 ntAPPRIS P2 TSL 2 BASIC14.63□□□□□ -0.07
HNF4AP41235 NDUFB1-207ENST00000617122 417 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
HNF4AP41235 AL603764.1-201ENST00000636452 321 ntBASIC14.63□□□□□ -0.07
HNF4AP41235 TMEM41B-204ENST00000528080 3968 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
HNF4AP41235 SCGN-202ENST00000377961 1447 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
HNF4AP41235 KRT8P14-201ENST00000414254 1442 ntBASIC14.63□□□□□ -0.07
HNF4AP41235 DRC3-216ENST00000584166 1953 ntTSL 5 BASIC14.63□□□□□ -0.07
HNF4AP41235 AC011455.3-201ENST00000599996 1967 ntAPPRIS P1 TSL 2 BASIC14.63□□□□□ -0.07
HNF4AP41235 SLC52A3-205ENST00000632431 2694 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
HNF4AP41235 YTHDC1-202ENST00000355665 3244 ntAPPRIS P3 TSL 1 (best) BASIC14.63□□□□□ -0.07
HNF4AP41235 PRMT9-201ENST00000322396 3528 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
HNF4AP41235 MLLT6-211ENST00000621332 7578 ntAPPRIS P2 TSL 1 (best) BASIC14.63□□□□□ -0.07
HNF4AP41235 AC058822.1-201ENST00000507166 2550 ntAPPRIS P1 TSL 2 BASIC14.63□□□□□ -0.07
HNF4AP41235 EXOC6B-209ENST00000634650 2583 ntTSL 5 BASIC14.63□□□□□ -0.07
HNF4AP41235 CYB5R2-204ENST00000524790 1338 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
HNF4AP41235 CDC42EP4-202ENST00000439510 2879 ntTSL 2 BASIC14.63□□□□□ -0.07
HNF4AP41235 LDLR-202ENST00000455727 2333 ntTSL 2 BASIC14.63□□□□□ -0.07
HNF4AP41235 GLG1-203ENST00000447066 3626 ntAPPRIS ALT2 TSL 2 BASIC14.62□□□□□ -0.07
HNF4AP41235 TMEM201-202ENST00000340381 3776 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.07
HNF4AP41235 GRM1-201ENST00000282753 6622 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
HNF4AP41235 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
HNF4AP41235 DNAH14-204ENST00000366849 2215 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
HNF4AP41235 SCAMP4-202ENST00000409472 2394 ntTSL 2 BASIC14.62□□□□□ -0.07
HNF4AP41235 FECH-202ENST00000382873 2526 ntAPPRIS ALT2 TSL 2 BASIC14.62□□□□□ -0.07
HNF4AP41235 HNRNPA1P48-201ENST00000562726 1377 ntBASIC14.62□□□□□ -0.07
HNF4AP41235 TEKT2-201ENST00000207457 1509 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
HNF4AP41235 IL12A-201ENST00000305579 1522 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
HNF4AP41235 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
HNF4AP41235 SPATA33-210ENST00000611218 1546 ntAPPRIS ALT2 TSL 2 BASIC14.62□□□□□ -0.07
HNF4AP41235 TLL1-206ENST00000513213 1829 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
HNF4AP41235 CDCA2-201ENST00000330560 3731 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
HNF4AP41235 NCKAP5L-201ENST00000335999 4900 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.07
HNF4AP41235 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
HNF4AP41235 RPS15-201ENST00000233609 534 ntTSL 2 BASIC14.62□□□□□ -0.07
HNF4AP41235 AHNAK-201ENST00000257247 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
HNF4AP41235 CGB5-201ENST00000301408 841 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
HNF4AP41235 XAF1-201ENST00000346752 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 76.2 ms