Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 OR4S1-201ENST00000319988 930 ntAPPRIS P1 BASIC24.35■■□□□ 1.49
CUX1P39880 GULP1-204ENST00000409637 1242 ntTSL 2 BASIC24.35■■□□□ 1.49
CUX1P39880 AC097059.1-201ENST00000413103 885 ntTSL 5 BASIC24.35■■□□□ 1.49
CUX1P39880 DDX39AP1-201ENST00000445147 1181 ntBASIC24.35■■□□□ 1.49
CUX1P39880 SCARNA12-201ENST00000459155 270 ntBASIC24.35■■□□□ 1.49
CUX1P39880 AC105219.2-201ENST00000527908 299 ntTSL 4 BASIC24.35■■□□□ 1.49
CUX1P39880 PRB3-202ENST00000538488 1283 ntAPPRIS P5 TSL 5 BASIC24.35■■□□□ 1.49
CUX1P39880 AC226150.1-201ENST00000544259 466 ntBASIC24.35■■□□□ 1.49
CUX1P39880 DUXAP9-201ENST00000547220 665 ntTSL 3 BASIC24.35■■□□□ 1.49
CUX1P39880 USB1-205ENST00000561743 1135 ntTSL 3 BASIC24.35■■□□□ 1.49
CUX1P39880 AL137793.2-201ENST00000632635 659 ntTSL 3 BASIC24.35■■□□□ 1.49
CUX1P39880 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
CUX1P39880 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
CUX1P39880 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
CUX1P39880 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC24.35■■□□□ 1.49
CUX1P39880 TARS2-203ENST00000369054 1998 ntTSL 2 BASIC24.35■■□□□ 1.49
CUX1P39880 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC24.35■■□□□ 1.49
CUX1P39880 MIR3936HG-204ENST00000621103 1793 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
CUX1P39880 VPS25-201ENST00000253794 1101 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
CUX1P39880 OR2K2-201ENST00000302681 1078 ntAPPRIS P1 BASIC24.35■■□□□ 1.49
CUX1P39880 CXCL12-205ENST00000395794 1052 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
CUX1P39880 KLF17P1-201ENST00000547105 1126 ntBASIC24.35■■□□□ 1.49
CUX1P39880 TGFB3-204ENST00000556285 1280 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
CUX1P39880 NDUFB10P1-201ENST00000567319 521 ntBASIC24.35■■□□□ 1.49
CUX1P39880 CPSF7-202ENST00000394888 3650 ntAPPRIS P4 TSL 2 BASIC24.35■■□□□ 1.49
CUX1P39880 KIR2DS4-201ENST00000339924 1608 ntAPPRIS P5 TSL 1 (best) BASIC24.34■■□□□ 1.49
CUX1P39880 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
CUX1P39880 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC24.34■■□□□ 1.49
CUX1P39880 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
CUX1P39880 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
CUX1P39880 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC24.34■■□□□ 1.49
CUX1P39880 FAM156A-206ENST00000612915 2233 ntAPPRIS P2 TSL 5 BASIC24.34■■□□□ 1.49
CUX1P39880 TMEM216-202ENST00000398979 908 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
CUX1P39880 AC010285.2-201ENST00000510240 569 ntTSL 4 BASIC24.34■■□□□ 1.49
CUX1P39880 AC010976.2-201ENST00000609697 852 ntBASIC24.34■■□□□ 1.49
CUX1P39880 CMPK1-203ENST00000371873 2930 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
CUX1P39880 TEKT4P2-202ENST00000559466 1312 ntBASIC24.34■■□□□ 1.49
CUX1P39880 ADI1-201ENST00000327435 2391 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
CUX1P39880 MEGF10-206ENST00000508365 2365 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
CUX1P39880 CRY2-201ENST00000417225 2053 ntTSL 2 BASIC24.34■■□□□ 1.49
CUX1P39880 AC068987.4-201ENST00000562343 2094 ntTSL 5 BASIC24.34■■□□□ 1.49
CUX1P39880 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC24.34■■□□□ 1.49
CUX1P39880 SLC20A1-201ENST00000272542 3381 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
CUX1P39880 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
CUX1P39880 APBB1-217ENST00000608645 1925 ntTSL 5 BASIC24.33■■□□□ 1.49
CUX1P39880 MBD1-225ENST00000591535 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC24.33■■□□□ 1.49
CUX1P39880 GDPGP1-201ENST00000329600 1193 ntAPPRIS P1 BASIC24.33■■□□□ 1.49
CUX1P39880 PLAC9-203ENST00000372270 534 ntAPPRIS ALT2 TSL 2 BASIC24.33■■□□□ 1.49
CUX1P39880 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC24.33■■□□□ 1.49
CUX1P39880 PRRC2B-207ENST00000458550 899 ntTSL 1 (best) BASIC24.33■■□□□ 1.49
CUX1P39880 RN7SL23P-201ENST00000484055 275 ntBASIC24.33■■□□□ 1.49
CUX1P39880 RAP1B-216ENST00000537460 1072 ntAPPRIS P1 TSL 5 BASIC24.33■■□□□ 1.49
CUX1P39880 KRT8P2-201ENST00000556193 944 ntBASIC24.33■■□□□ 1.49
CUX1P39880 AC027139.1-201ENST00000565286 951 ntBASIC24.33■■□□□ 1.49
CUX1P39880 AC009041.1-201ENST00000565401 544 ntTSL 4 BASIC24.33■■□□□ 1.49
CUX1P39880 AP003392.6-201ENST00000607709 325 ntBASIC24.33■■□□□ 1.49
CUX1P39880 LAMA1-209ENST00000638611 1310 ntTSL 5 BASIC24.33■■□□□ 1.49
CUX1P39880 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC24.33■■□□□ 1.49
CUX1P39880 AC237221.1-201ENST00000561575 1881 ntTSL 1 (best) BASIC24.33■■□□□ 1.48
CUX1P39880 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.48
CUX1P39880 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.48
CUX1P39880 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC24.33■■□□□ 1.48
CUX1P39880 MAGEA8-205ENST00000542674 2084 ntAPPRIS P1 TSL 3 BASIC24.33■■□□□ 1.48
CUX1P39880 LRCH3-202ENST00000414675 2299 ntAPPRIS ALT2 TSL 2 BASIC24.32■■□□□ 1.48
CUX1P39880 AIF1L-205ENST00000372301 671 ntTSL 2 BASIC24.32■■□□□ 1.48
CUX1P39880 RPA3-202ENST00000396682 847 ntAPPRIS P1 TSL 3 BASIC24.32■■□□□ 1.48
CUX1P39880 CTHRC1-202ENST00000415886 571 ntTSL 2 BASIC24.32■■□□□ 1.48
CUX1P39880 AC093673.1-201ENST00000429630 648 ntTSL 2 BASIC24.32■■□□□ 1.48
CUX1P39880 RPL9-203ENST00000449470 1127 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
CUX1P39880 GNG10P1-201ENST00000452289 199 ntBASIC24.32■■□□□ 1.48
CUX1P39880 AC108462.1-201ENST00000457467 850 ntTSL 3 BASIC24.32■■□□□ 1.48
CUX1P39880 RN7SL494P-201ENST00000461517 304 ntBASIC24.32■■□□□ 1.48
CUX1P39880 LINC02435-201ENST00000508291 584 ntTSL 3 BASIC24.32■■□□□ 1.48
CUX1P39880 LINC01154-201ENST00000548617 454 ntTSL 3 BASIC24.32■■□□□ 1.48
CUX1P39880 LINC02285-201ENST00000557121 943 ntTSL 2 BASIC24.32■■□□□ 1.48
CUX1P39880 TRMT112P3-201ENST00000580149 358 ntBASIC24.32■■□□□ 1.48
CUX1P39880 ZNF286A-212ENST00000580259 527 ntTSL 4 BASIC24.32■■□□□ 1.48
CUX1P39880 LINC01107-201ENST00000446979 1975 ntTSL 2 BASIC24.32■■□□□ 1.48
CUX1P39880 SCAF11-203ENST00000395453 1336 ntAPPRIS ALT2 TSL 2 BASIC24.32■■□□□ 1.48
CUX1P39880 LAP3P2-201ENST00000454686 1454 ntBASIC24.32■■□□□ 1.48
CUX1P39880 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
CUX1P39880 EID1-201ENST00000530028 2298 ntAPPRIS P1 BASIC24.32■■□□□ 1.48
CUX1P39880 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
CUX1P39880 AC011270.2-201ENST00000624293 2550 ntBASIC24.32■■□□□ 1.48
CUX1P39880 MAGEA2B-202ENST00000370293 1714 ntAPPRIS P1 TSL 2 BASIC24.32■■□□□ 1.48
CUX1P39880 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC24.32■■□□□ 1.48
CUX1P39880 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC24.32■■□□□ 1.48
CUX1P39880 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
CUX1P39880 PRKAG3-206ENST00000529249 2222 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
CUX1P39880 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC24.31■■□□□ 1.48
CUX1P39880 LINC01022-201ENST00000415652 394 ntTSL 3 BASIC24.31■■□□□ 1.48
CUX1P39880 AC073094.1-201ENST00000453798 433 ntTSL 2 BASIC24.31■■□□□ 1.48
CUX1P39880 AC244197.1-201ENST00000456494 951 ntBASIC24.31■■□□□ 1.48
CUX1P39880 AC245884.1-201ENST00000457113 529 ntTSL 3 BASIC24.31■■□□□ 1.48
CUX1P39880 DMKN-256ENST00000492341 738 ntAPPRIS ALT2 TSL 2 BASIC24.31■■□□□ 1.48
CUX1P39880 RNA5SP406-201ENST00000516106 112 ntBASIC24.31■■□□□ 1.48
CUX1P39880 C17orf62-216ENST00000578919 841 ntAPPRIS P1 TSL 3 BASIC24.31■■□□□ 1.48
CUX1P39880 DUSP22-213ENST00000605035 1231 ntTSL 2 BASIC24.31■■□□□ 1.48
CUX1P39880 RNF146-211ENST00000609447 607 ntTSL 4 BASIC24.31■■□□□ 1.48
CUX1P39880 CCDC113-206ENST00000616795 891 ntTSL 5 BASIC24.31■■□□□ 1.48
Retrieved 100 of 98,524 protein–RNA pairs in 155.5 ms