Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC16.42■□□□□ 0.22
LIMA1Q9UHB6 AL390955.2-201ENST00000603032 514 ntBASIC16.42■□□□□ 0.22
LIMA1Q9UHB6 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC16.42■□□□□ 0.22
LIMA1Q9UHB6 AC092634.8-201ENST00000639687 773 ntTSL 5 BASIC16.42■□□□□ 0.22
LIMA1Q9UHB6 ANO10-203ENST00000396091 2419 ntTSL 2 BASIC16.42■□□□□ 0.22
LIMA1Q9UHB6 PLXNC1-201ENST00000258526 7346 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
LIMA1Q9UHB6 LINC01864-201ENST00000587218 1661 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
LIMA1Q9UHB6 IL17RD-208ENST00000640796 2345 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
LIMA1Q9UHB6 IPO8-201ENST00000256079 5325 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
LIMA1Q9UHB6 APBB3-201ENST00000354402 1810 ntTSL 5 BASIC16.42■□□□□ 0.22
LIMA1Q9UHB6 TMEM38A-201ENST00000187762 2649 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
LIMA1Q9UHB6 SYT13-201ENST00000020926 5144 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
LIMA1Q9UHB6 LOXL3-202ENST00000393937 2398 ntTSL 5 BASIC16.42■□□□□ 0.22
LIMA1Q9UHB6 TNFRSF10C-201ENST00000356864 1718 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
LIMA1Q9UHB6 ST7L-207ENST00000369669 1743 ntTSL 2 BASIC16.42■□□□□ 0.22
LIMA1Q9UHB6 COL6A2-201ENST00000300527 3461 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
LIMA1Q9UHB6 SLC26A8-201ENST00000355574 3463 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
LIMA1Q9UHB6 CAMK2A-203ENST00000398376 1493 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
LIMA1Q9UHB6 AC003102.2-201ENST00000589195 1469 ntBASIC16.42■□□□□ 0.22
LIMA1Q9UHB6 SRRD-201ENST00000215917 4020 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
LIMA1Q9UHB6 ADGRG2-207ENST00000379869 4768 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
LIMA1Q9UHB6 DEPDC7-201ENST00000241051 1755 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
LIMA1Q9UHB6 GDF9-201ENST00000296875 1796 ntTSL 5 BASIC16.41■□□□□ 0.22
LIMA1Q9UHB6 BBS1-202ENST00000393994 1790 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
LIMA1Q9UHB6 SP6-201ENST00000342234 3800 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
LIMA1Q9UHB6 PSD2-201ENST00000274710 4513 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
LIMA1Q9UHB6 INPP5B-202ENST00000373023 4694 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
LIMA1Q9UHB6 TOR2A-202ENST00000373281 2477 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
LIMA1Q9UHB6 TTC7A-203ENST00000409245 3033 ntTSL 2 BASIC16.41■□□□□ 0.22
LIMA1Q9UHB6 RUFY1-204ENST00000437570 2642 ntAPPRIS ALT2 TSL 2 BASIC16.41■□□□□ 0.22
LIMA1Q9UHB6 SPOCK3-226ENST00000541354 2797 ntTSL 2 BASIC16.41■□□□□ 0.22
LIMA1Q9UHB6 SLC22A15-202ENST00000369503 4720 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
LIMA1Q9UHB6 KDM3A-201ENST00000312912 4886 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
LIMA1Q9UHB6 LMAN2L-201ENST00000264963 2397 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
LIMA1Q9UHB6 RPS6KL1-201ENST00000354625 5195 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
LIMA1Q9UHB6 SEMA3F-202ENST00000413852 3212 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
LIMA1Q9UHB6 RPS15-201ENST00000233609 534 ntTSL 2 BASIC16.41■□□□□ 0.22
LIMA1Q9UHB6 RUNDC1-201ENST00000361677 3828 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
LIMA1Q9UHB6 CPLX2-202ENST00000393745 826 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
LIMA1Q9UHB6 TLE1P1-201ENST00000422965 589 ntBASIC16.41■□□□□ 0.22
LIMA1Q9UHB6 EIF3FP3-201ENST00000434851 1086 ntBASIC16.41■□□□□ 0.22
LIMA1Q9UHB6 URGCP-206ENST00000446958 365 ntTSL 2 BASIC16.41■□□□□ 0.22
LIMA1Q9UHB6 AC114812.1-204ENST00000449669 728 ntBASIC16.41■□□□□ 0.22
LIMA1Q9UHB6 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC16.41■□□□□ 0.22
LIMA1Q9UHB6 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
LIMA1Q9UHB6 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC16.41■□□□□ 0.22
LIMA1Q9UHB6 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC16.41■□□□□ 0.22
LIMA1Q9UHB6 RPS15-205ENST00000586686 562 ntTSL 5 BASIC16.41■□□□□ 0.22
LIMA1Q9UHB6 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC16.41■□□□□ 0.22
LIMA1Q9UHB6 YIF1B-214ENST00000591784 940 ntTSL 5 BASIC16.41■□□□□ 0.22
LIMA1Q9UHB6 RPS15-208ENST00000591804 711 ntTSL 5 BASIC16.41■□□□□ 0.22
LIMA1Q9UHB6 RPS15-209ENST00000592588 510 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
LIMA1Q9UHB6 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC16.41■□□□□ 0.22
LIMA1Q9UHB6 MIR8072-201ENST00000614241 80 ntBASIC16.41■□□□□ 0.22
LIMA1Q9UHB6 AGAP1-213ENST00000619456 1057 ntTSL 5 BASIC16.41■□□□□ 0.22
LIMA1Q9UHB6 MIRLET7BHG-203ENST00000435439 2264 ntTSL 2 BASIC16.41■□□□□ 0.22
LIMA1Q9UHB6 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
LIMA1Q9UHB6 GLG1-201ENST00000205061 8261 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
LIMA1Q9UHB6 AC021683.3-202ENST00000592572 4440 ntTSL 5 BASIC16.41■□□□□ 0.22
LIMA1Q9UHB6 CCAR2-201ENST00000308511 4853 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
LIMA1Q9UHB6 CNNM2-203ENST00000433628 3857 ntAPPRIS ALT1 TSL 2 BASIC16.41■□□□□ 0.22
LIMA1Q9UHB6 TOM1L1-201ENST00000348161 1895 ntTSL 2 BASIC16.41■□□□□ 0.22
LIMA1Q9UHB6 NUDT16-203ENST00000537561 5943 ntTSL 5 BASIC16.41■□□□□ 0.22
LIMA1Q9UHB6 BEND6-203ENST00000370748 3497 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
LIMA1Q9UHB6 XPNPEP1-201ENST00000322238 2467 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
LIMA1Q9UHB6 APBB1IP-202ENST00000376236 2771 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
LIMA1Q9UHB6 ODF3-201ENST00000325113 1307 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
LIMA1Q9UHB6 FKBPL-201ENST00000375156 1345 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
LIMA1Q9UHB6 AGER-206ENST00000375070 1463 ntTSL 5 BASIC16.41■□□□□ 0.22
LIMA1Q9UHB6 AGER-208ENST00000438221 1493 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
LIMA1Q9UHB6 HSD17B6-205ENST00000554643 1751 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
LIMA1Q9UHB6 RN7SL832P-201ENST00000607781 1756 ntBASIC16.41■□□□□ 0.22
LIMA1Q9UHB6 CDCA3-207ENST00000538862 1943 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
LIMA1Q9UHB6 TDRD6-201ENST00000316081 6817 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
LIMA1Q9UHB6 UBE2I-201ENST00000325437 2832 ntAPPRIS P1 TSL 3 BASIC16.41■□□□□ 0.22
LIMA1Q9UHB6 ABCG1-205ENST00000398449 2998 ntAPPRIS ALT1 TSL 1 (best) BASIC16.41■□□□□ 0.22
LIMA1Q9UHB6 PRRT2-202ENST00000358758 2567 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
LIMA1Q9UHB6 OPN5-202ENST00000371211 1801 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
LIMA1Q9UHB6 ACTL8-202ENST00000617065 1670 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
LIMA1Q9UHB6 IGSF1-204ENST00000370903 4594 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
LIMA1Q9UHB6 LENG8-208ENST00000610347 5789 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
LIMA1Q9UHB6 SNX14-203ENST00000369627 3111 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
LIMA1Q9UHB6 RBPJ-205ENST00000355476 5990 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
LIMA1Q9UHB6 DNASE1L1-206ENST00000393638 2665 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
LIMA1Q9UHB6 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
LIMA1Q9UHB6 KRTAP10-7-201ENST00000609664 1578 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
LIMA1Q9UHB6 AC007388.1-204ENST00000449569 2517 ntTSL 2 BASIC16.4■□□□□ 0.22
LIMA1Q9UHB6 PEX5L-211ENST00000472994 2235 ntAPPRIS ALT2 TSL 2 BASIC16.4■□□□□ 0.22
LIMA1Q9UHB6 CGB5-201ENST00000301408 841 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
LIMA1Q9UHB6 SPDYE19P-201ENST00000338590 713 ntBASIC16.4■□□□□ 0.22
LIMA1Q9UHB6 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC16.4■□□□□ 0.22
LIMA1Q9UHB6 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
LIMA1Q9UHB6 METTL26-204ENST00000397665 558 ntTSL 2 BASIC16.4■□□□□ 0.22
LIMA1Q9UHB6 MEP1AP4-201ENST00000423244 1087 ntBASIC16.4■□□□□ 0.22
LIMA1Q9UHB6 AC134915.1-201ENST00000426461 574 ntBASIC16.4■□□□□ 0.22
LIMA1Q9UHB6 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC16.4■□□□□ 0.22
LIMA1Q9UHB6 TMEM147-AS1-201ENST00000444728 487 ntTSL 3 BASIC16.4■□□□□ 0.22
LIMA1Q9UHB6 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC16.4■□□□□ 0.22
LIMA1Q9UHB6 PRSS48-202ENST00000455694 989 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
LIMA1Q9UHB6 CHCHD7-211ENST00000521831 573 ntTSL 2 BASIC16.4■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 127.2 ms