Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 YIPF7-201ENST00000332990 937 ntTSL 5 BASIC15.06■□□□□ 0
TM9SF3Q9HD45 CPLX2-202ENST00000393745 826 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
TM9SF3Q9HD45 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC15.06■□□□□ 0
TM9SF3Q9HD45 AL662890.1-201ENST00000396818 632 ntBASIC15.06■□□□□ 0
TM9SF3Q9HD45 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC15.06■□□□□ 0
TM9SF3Q9HD45 RPL35A-205ENST00000448864 549 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
TM9SF3Q9HD45 CHL1-AS2-203ENST00000452919 726 ntTSL 2 BASIC15.06■□□□□ 0
TM9SF3Q9HD45 ATP6V0CP2-201ENST00000469409 207 ntBASIC15.06■□□□□ 0
TM9SF3Q9HD45 AL391280.1-201ENST00000506969 1062 ntBASIC15.06■□□□□ 0
TM9SF3Q9HD45 CHCHD7-211ENST00000521831 573 ntTSL 2 BASIC15.06■□□□□ 0
TM9SF3Q9HD45 CYB561A3-219ENST00000544118 1136 ntTSL 5 BASIC15.06■□□□□ 0
TM9SF3Q9HD45 AC025810.1-201ENST00000569986 981 ntTSL 1 (best) BASIC15.06■□□□□ 0
TM9SF3Q9HD45 KLK11-210ENST00000600362 759 ntTSL 3 BASIC15.06■□□□□ 0
TM9SF3Q9HD45 ZACNP1-201ENST00000612259 710 ntBASIC15.06■□□□□ 0
TM9SF3Q9HD45 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC15.06■□□□□ 0
TM9SF3Q9HD45 TUBB3-215ENST00000625617 570 ntTSL 4 BASIC15.06■□□□□ 0
TM9SF3Q9HD45 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC15.06■□□□□ 0
TM9SF3Q9HD45 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
TM9SF3Q9HD45 AL109910.1-201ENST00000452071 1330 ntTSL 2 BASIC15.06■□□□□ 0
TM9SF3Q9HD45 MCFD2-201ENST00000319466 4182 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
TM9SF3Q9HD45 FUS-201ENST00000254108 5119 ntAPPRIS P3 TSL 1 (best) BASIC15.06■□□□□ 0
TM9SF3Q9HD45 PSD4-201ENST00000245796 5188 ntAPPRIS P2 TSL 1 (best) BASIC15.06■□□□□ 0
TM9SF3Q9HD45 KRT8P4-201ENST00000509735 1454 ntBASIC15.06■□□□□ 0
TM9SF3Q9HD45 CARMIL3-201ENST00000342740 4597 ntAPPRIS P1 TSL 5 BASIC15.06■□□□□ 0
TM9SF3Q9HD45 UBE3A-227ENST00000638011 8742 ntAPPRIS ALT1 TSL 5 BASIC15.06■□□□□ 0
TM9SF3Q9HD45 ZNF367-201ENST00000375256 3646 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
TM9SF3Q9HD45 CYP4F22-201ENST00000269703 2641 ntAPPRIS P1 TSL 2 BASIC15.06■□□□□ 0
TM9SF3Q9HD45 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC15.06■□□□□ 0
TM9SF3Q9HD45 AC138904.3-201ENST00000635780 2681 ntTSL 5 BASIC15.06■□□□□ 0
TM9SF3Q9HD45 NUDT16-203ENST00000537561 5943 ntTSL 5 BASIC15.06■□□□□ 0
TM9SF3Q9HD45 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC15.06■□□□□ 0
TM9SF3Q9HD45 LMNA-201ENST00000347559 3137 ntTSL 5 BASIC15.06■□□□□ 0
TM9SF3Q9HD45 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC15.05■□□□□ 0
TM9SF3Q9HD45 REPIN1-201ENST00000397281 3292 ntAPPRIS P3 TSL 2 BASIC15.05■□□□□ 0
TM9SF3Q9HD45 PI16-203ENST00000611814 2083 ntAPPRIS P1 TSL 5 BASIC15.05■□□□□ 0
TM9SF3Q9HD45 MROH1-201ENST00000326134 5183 ntAPPRIS P3 TSL 5 BASIC15.05■□□□□ 0
TM9SF3Q9HD45 TSC22D3-201ENST00000315660 2213 ntTSL 1 (best) BASIC15.05■□□□□ 0
TM9SF3Q9HD45 MAP3K4-202ENST00000366919 5397 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ 0
TM9SF3Q9HD45 ZNF84-202ENST00000392319 7020 ntAPPRIS P2 TSL 1 (best) BASIC15.05■□□□□ 0
TM9SF3Q9HD45 BMP7-201ENST00000395863 4013 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
TM9SF3Q9HD45 CYP27B1-201ENST00000228606 2540 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
TM9SF3Q9HD45 ERRFI1-201ENST00000377482 3104 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
TM9SF3Q9HD45 PCDHA4-203ENST00000530339 5251 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
TM9SF3Q9HD45 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC15.05■□□□□ -0
TM9SF3Q9HD45 C1QB-201ENST00000314933 1044 ntTSL 1 (best) BASIC15.05■□□□□ -0
TM9SF3Q9HD45 KRTAP21-2-201ENST00000333892 440 ntAPPRIS P1 BASIC15.05■□□□□ -0
TM9SF3Q9HD45 HIST2H2AA3-201ENST00000369159 549 ntAPPRIS P1 BASIC15.05■□□□□ -0
TM9SF3Q9HD45 KNCN-202ENST00000396314 608 ntAPPRIS P3 TSL 4 BASIC15.05■□□□□ -0
TM9SF3Q9HD45 RGS5-214ENST00000429865 754 ntTSL 3 BASIC15.05■□□□□ -0
TM9SF3Q9HD45 AL157392.3-216ENST00000437446 462 ntTSL 3 BASIC15.05■□□□□ -0
TM9SF3Q9HD45 AL358393.1-201ENST00000456771 532 ntTSL 2 BASIC15.05■□□□□ -0
TM9SF3Q9HD45 CENPBD1P1-203ENST00000479047 569 ntTSL 3 BASIC15.05■□□□□ -0
TM9SF3Q9HD45 NCK2-206ENST00000522586 490 ntTSL 5 BASIC15.05■□□□□ -0
TM9SF3Q9HD45 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC15.05■□□□□ -0
TM9SF3Q9HD45 ANO1-AS1-201ENST00000524987 646 ntTSL 3 BASIC15.05■□□□□ -0
TM9SF3Q9HD45 NDUFV2P1-201ENST00000596415 907 ntBASIC15.05■□□□□ -0
TM9SF3Q9HD45 HIST2H2AA4-201ENST00000607355 564 ntAPPRIS P1 BASIC15.05■□□□□ -0
TM9SF3Q9HD45 PRRC2B-210ENST00000638390 1084 ntTSL 1 (best) BASIC15.05■□□□□ -0
TM9SF3Q9HD45 DGKI-201ENST00000288490 3895 ntAPPRIS P3 TSL 5 BASIC15.05■□□□□ -0
TM9SF3Q9HD45 WASHC2C-208ENST00000537517 4417 ntAPPRIS ALT2 TSL 2 BASIC15.05■□□□□ -0
TM9SF3Q9HD45 ZNF750-202ENST00000572562 1513 ntTSL 2 BASIC15.05■□□□□ -0
TM9SF3Q9HD45 TNN-201ENST00000239462 5008 ntAPPRIS P1 TSL 2 BASIC15.05■□□□□ -0
TM9SF3Q9HD45 AATBC-203ENST00000448247 1889 ntTSL 2 BASIC15.05■□□□□ -0
TM9SF3Q9HD45 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC15.05■□□□□ -0
TM9SF3Q9HD45 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC15.05■□□□□ -0
TM9SF3Q9HD45 LAP3-211ENST00000618908 2100 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
TM9SF3Q9HD45 PRKAG3-206ENST00000529249 2222 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
TM9SF3Q9HD45 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC15.05■□□□□ -0
TM9SF3Q9HD45 PCED1B-202ENST00000546455 2328 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
TM9SF3Q9HD45 ACSL1-208ENST00000507295 2490 ntTSL 2 BASIC15.05■□□□□ -0
TM9SF3Q9HD45 ISCA2-204ENST00000556816 2626 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
TM9SF3Q9HD45 ZNF212-201ENST00000335870 2810 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
TM9SF3Q9HD45 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
TM9SF3Q9HD45 PPFIBP2-201ENST00000299492 3557 ntAPPRIS P3 TSL 1 (best) BASIC15.05■□□□□ -0
TM9SF3Q9HD45 MMP25-201ENST00000336577 3554 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
TM9SF3Q9HD45 LINC02495-201ENST00000508601 4167 ntTSL 2 BASIC15.05■□□□□ -0
TM9SF3Q9HD45 LRCH1-202ENST00000389797 3314 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
TM9SF3Q9HD45 REPIN1-209ENST00000479668 3182 ntTSL 2 BASIC15.04■□□□□ -0
TM9SF3Q9HD45 TBC1D3P5-202ENST00000581469 2513 ntTSL 1 (best) BASIC15.04■□□□□ -0
TM9SF3Q9HD45 FERMT3-201ENST00000279227 2489 ntAPPRIS P4 TSL 1 (best) BASIC15.04■□□□□ -0
TM9SF3Q9HD45 FERMT3-202ENST00000345728 2481 ntAPPRIS ALT1 TSL 1 (best) BASIC15.04■□□□□ -0
TM9SF3Q9HD45 ASAH1-210ENST00000520781 2245 ntTSL 2 BASIC15.04■□□□□ -0
TM9SF3Q9HD45 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC15.04■□□□□ -0
TM9SF3Q9HD45 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC15.04■□□□□ -0
TM9SF3Q9HD45 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC15.04■□□□□ -0
TM9SF3Q9HD45 FAM83A-201ENST00000276699 1858 ntTSL 1 (best) BASIC15.04■□□□□ -0
TM9SF3Q9HD45 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
TM9SF3Q9HD45 FMR1-203ENST00000370470 1774 ntTSL 5 BASIC15.04■□□□□ -0
TM9SF3Q9HD45 TNR-201ENST00000263525 5190 ntAPPRIS P1 TSL 5 BASIC15.04■□□□□ -0
TM9SF3Q9HD45 ASPH-202ENST00000379449 1603 ntTSL 1 (best) BASIC15.04■□□□□ -0
TM9SF3Q9HD45 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
TM9SF3Q9HD45 CNBP-208ENST00000504813 1549 ntAPPRIS ALT1 TSL 2 BASIC15.04■□□□□ -0
TM9SF3Q9HD45 AC027601.1-201ENST00000575922 4506 ntTSL 2 BASIC15.04■□□□□ -0
TM9SF3Q9HD45 FGF1-201ENST00000337706 1469 ntAPPRIS P1 TSL 2 BASIC15.04■□□□□ -0
TM9SF3Q9HD45 DSCR3-204ENST00000399001 821 ntTSL 2 BASIC15.04■□□□□ -0
TM9SF3Q9HD45 MCFD2-204ENST00000409207 1113 ntAPPRIS P1 TSL 2 BASIC15.04■□□□□ -0
TM9SF3Q9HD45 AC007319.1-202ENST00000412276 829 ntTSL 5 BASIC15.04■□□□□ -0
TM9SF3Q9HD45 AL161719.1-201ENST00000442716 385 ntTSL 5 BASIC15.04■□□□□ -0
TM9SF3Q9HD45 AC092944.1-202ENST00000487238 483 ntTSL 4 BASIC15.04■□□□□ -0
TM9SF3Q9HD45 KCNK16-205ENST00000507712 889 ntTSL 3 BASIC15.04■□□□□ -0
Retrieved 100 of 98,524 protein–RNA pairs in 36.9 ms