Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 TTC28-AS1-207ENST00000428584 5859 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
PTCHD1Q96NR3 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
PTCHD1Q96NR3 RHOXF1P3-203ENST00000640298 2668 ntTSL 5 BASIC14.23□□□□□ -0.13
PTCHD1Q96NR3 AP002990.1-202ENST00000496634 5064 ntAPPRIS P1 TSL 2 BASIC14.23□□□□□ -0.13
PTCHD1Q96NR3 KCNMA1-202ENST00000286628 6233 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
PTCHD1Q96NR3 CCDC140-201ENST00000295226 1699 ntAPPRIS P2 TSL 1 (best) BASIC14.23□□□□□ -0.13
PTCHD1Q96NR3 ZNF706-201ENST00000311212 2615 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
PTCHD1Q96NR3 ST14-201ENST00000278742 3539 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
PTCHD1Q96NR3 SLC30A5-209ENST00000621204 3999 ntTSL 5 BASIC14.23□□□□□ -0.13
PTCHD1Q96NR3 RLF-201ENST00000372771 6246 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
PTCHD1Q96NR3 SNRNP27-202ENST00000409116 1339 ntTSL 5 BASIC14.22□□□□□ -0.13
PTCHD1Q96NR3 ALDH3B2-201ENST00000349015 2649 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
PTCHD1Q96NR3 CACNA2D3-202ENST00000415676 3661 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
PTCHD1Q96NR3 LRRC57-202ENST00000397130 2384 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
PTCHD1Q96NR3 SELPLG-201ENST00000228463 1704 ntAPPRIS ALT2 TSL 2 BASIC14.22□□□□□ -0.13
PTCHD1Q96NR3 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
PTCHD1Q96NR3 DMPK-202ENST00000343373 3227 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
PTCHD1Q96NR3 APBB1-217ENST00000608645 1925 ntTSL 5 BASIC14.22□□□□□ -0.13
PTCHD1Q96NR3 ANKRD19P-201ENST00000338192 862 ntBASIC14.22□□□□□ -0.13
PTCHD1Q96NR3 ZG16B-201ENST00000382280 831 ntAPPRIS P2 TSL 1 (best) BASIC14.22□□□□□ -0.13
PTCHD1Q96NR3 C2orf15-202ENST00000409684 1058 ntAPPRIS P1 TSL 3 BASIC14.22□□□□□ -0.13
PTCHD1Q96NR3 AC233976.1-201ENST00000425150 451 ntTSL 3 BASIC14.22□□□□□ -0.13
PTCHD1Q96NR3 MNX1-AS2-201ENST00000429228 374 ntTSL 3 BASIC14.22□□□□□ -0.13
PTCHD1Q96NR3 FAM197Y7-201ENST00000432892 766 ntBASIC14.22□□□□□ -0.13
PTCHD1Q96NR3 AL035588.1-201ENST00000438967 408 ntTSL 3 BASIC14.22□□□□□ -0.13
PTCHD1Q96NR3 AC244107.1-201ENST00000442033 332 ntBASIC14.22□□□□□ -0.13
PTCHD1Q96NR3 KRT223P-202ENST00000449164 1292 ntBASIC14.22□□□□□ -0.13
PTCHD1Q96NR3 LCN10-203ENST00000474369 564 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
PTCHD1Q96NR3 RNA5SP486-201ENST00000515961 83 ntBASIC14.22□□□□□ -0.13
PTCHD1Q96NR3 CHCHD7-211ENST00000521831 573 ntTSL 2 BASIC14.22□□□□□ -0.13
PTCHD1Q96NR3 CCKBR-204ENST00000531712 463 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
PTCHD1Q96NR3 AP000812.2-201ENST00000538934 718 ntBASIC14.22□□□□□ -0.13
PTCHD1Q96NR3 LINC01887-202ENST00000584734 860 ntTSL 3 BASIC14.22□□□□□ -0.13
PTCHD1Q96NR3 AC005597.1-201ENST00000588092 420 ntTSL 3 BASIC14.22□□□□□ -0.13
PTCHD1Q96NR3 H2BFM-203ENST00000598335 465 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
PTCHD1Q96NR3 NEK5-204ENST00000617045 2127 ntAPPRIS P1 TSL 2 BASIC14.22□□□□□ -0.13
PTCHD1Q96NR3 ENPP7P14-201ENST00000621765 1040 ntBASIC14.22□□□□□ -0.13
PTCHD1Q96NR3 RHOXF1P1-202ENST00000635473 501 ntBASIC14.22□□□□□ -0.13
PTCHD1Q96NR3 COX11-210ENST00000639671 696 ntBASIC14.22□□□□□ -0.13
PTCHD1Q96NR3 FAM32A-201ENST00000263384 1455 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
PTCHD1Q96NR3 PCDHB8-201ENST00000239444 2740 ntAPPRIS P1 BASIC14.22□□□□□ -0.13
PTCHD1Q96NR3 SULT1C4-201ENST00000272452 1860 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
PTCHD1Q96NR3 SNHG15-202ENST00000577700 3116 ntTSL 2 BASIC14.22□□□□□ -0.13
PTCHD1Q96NR3 PATZ1-204ENST00000405309 3711 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
PTCHD1Q96NR3 EML1-201ENST00000262233 4535 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
PTCHD1Q96NR3 GLI2-210ENST00000452319 6799 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
PTCHD1Q96NR3 TERF1-201ENST00000276602 3268 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
PTCHD1Q96NR3 IFNAR1-201ENST00000270139 6139 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
PTCHD1Q96NR3 RALGDS-202ENST00000372050 3634 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
PTCHD1Q96NR3 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC14.22□□□□□ -0.13
PTCHD1Q96NR3 MPC2-202ENST00000367846 2177 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
PTCHD1Q96NR3 ADCYAP1R1-204ENST00000409489 1761 ntTSL 5 BASIC14.22□□□□□ -0.13
PTCHD1Q96NR3 PGBD5-202ENST00000525115 1569 ntTSL 2 BASIC14.22□□□□□ -0.13
PTCHD1Q96NR3 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
PTCHD1Q96NR3 CICP24-201ENST00000605464 2705 ntBASIC14.21□□□□□ -0.13
PTCHD1Q96NR3 CDH16-207ENST00000568632 2526 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
PTCHD1Q96NR3 AC009961.1-203ENST00000607836 2520 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
PTCHD1Q96NR3 COPS7B-224ENST00000620578 2500 ntTSL 2 BASIC14.21□□□□□ -0.13
PTCHD1Q96NR3 ABCG4-205ENST00000619701 3852 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
PTCHD1Q96NR3 LINC01185-202ENST00000452343 1705 ntTSL 2 BASIC14.21□□□□□ -0.13
PTCHD1Q96NR3 BCL11A-203ENST00000358510 2697 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
PTCHD1Q96NR3 GSN-203ENST00000373808 2664 ntTSL 2 BASIC14.21□□□□□ -0.13
PTCHD1Q96NR3 LPAR1-203ENST00000374431 3637 ntAPPRIS P2 TSL 1 (best) BASIC14.21□□□□□ -0.13
PTCHD1Q96NR3 LRCH3-202ENST00000414675 2299 ntAPPRIS ALT2 TSL 2 BASIC14.21□□□□□ -0.13
PTCHD1Q96NR3 USP25-201ENST00000285679 3973 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
PTCHD1Q96NR3 AC011899.2-202ENST00000438047 4302 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
PTCHD1Q96NR3 PAX6-203ENST00000379109 3182 ntAPPRIS ALT1 TSL 2 BASIC14.21□□□□□ -0.13
PTCHD1Q96NR3 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
PTCHD1Q96NR3 SLC43A2-202ENST00000412517 1658 ntTSL 2 BASIC14.21□□□□□ -0.13
PTCHD1Q96NR3 PIGT-202ENST00000279036 2245 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
PTCHD1Q96NR3 TMEM117-201ENST00000266534 2758 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
PTCHD1Q96NR3 DMAC2-204ENST00000438807 1454 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
PTCHD1Q96NR3 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
PTCHD1Q96NR3 AC138517.2-201ENST00000637503 2594 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
PTCHD1Q96NR3 HNRNPA1-202ENST00000340913 1842 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
PTCHD1Q96NR3 TEX12-201ENST00000280358 1147 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
PTCHD1Q96NR3 CYTL1-201ENST00000307746 1003 ntAPPRIS P2 TSL 1 (best) BASIC14.21□□□□□ -0.13
PTCHD1Q96NR3 GBGT1-202ENST00000372038 847 ntTSL 3 BASIC14.21□□□□□ -0.13
PTCHD1Q96NR3 PRAF2-201ENST00000376386 801 ntTSL 2 BASIC14.21□□□□□ -0.13
PTCHD1Q96NR3 SHBG-202ENST00000380450 1271 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
PTCHD1Q96NR3 CNN2P8-201ENST00000421872 913 ntBASIC14.21□□□□□ -0.13
PTCHD1Q96NR3 KCNQ1-AS1-201ENST00000440887 1084 ntTSL 5 BASIC14.21□□□□□ -0.13
PTCHD1Q96NR3 RNF216P1-213ENST00000494947 946 ntTSL 2 BASIC14.21□□□□□ -0.13
PTCHD1Q96NR3 AC078819.1-201ENST00000547454 765 ntBASIC14.21□□□□□ -0.13
PTCHD1Q96NR3 AC012085.1-201ENST00000548270 765 ntBASIC14.21□□□□□ -0.13
PTCHD1Q96NR3 AC090502.1-201ENST00000549905 748 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
PTCHD1Q96NR3 AC090502.1-204ENST00000551210 469 ntTSL 2 BASIC14.21□□□□□ -0.13
PTCHD1Q96NR3 AC091891.1-201ENST00000560688 688 ntTSL 3 BASIC14.21□□□□□ -0.13
PTCHD1Q96NR3 AC024619.2-201ENST00000581964 517 ntTSL 5 BASIC14.21□□□□□ -0.13
PTCHD1Q96NR3 TXNL4A-212ENST00000592957 546 ntTSL 3 BASIC14.21□□□□□ -0.13
PTCHD1Q96NR3 AC138951.2-201ENST00000623455 1161 ntBASIC14.21□□□□□ -0.13
PTCHD1Q96NR3 APP-208ENST00000439274 2517 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
PTCHD1Q96NR3 NCAPH2-201ENST00000299821 1996 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
PTCHD1Q96NR3 SCGN-202ENST00000377961 1447 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
PTCHD1Q96NR3 C9orf139-202ENST00000623196 4990 ntTSL 2 BASIC14.21□□□□□ -0.13
PTCHD1Q96NR3 ABHD16A-201ENST00000395952 2103 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
PTCHD1Q96NR3 TIMP2-201ENST00000262768 3652 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
PTCHD1Q96NR3 IL1RN-203ENST00000361779 1922 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
PTCHD1Q96NR3 MTA1-203ENST00000406191 2770 ntAPPRIS P5 TSL 2 BASIC14.21□□□□□ -0.14
PTCHD1Q96NR3 ZNF777-201ENST00000247930 3233 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 38.3 ms