Protein–RNA interactions for Protein: Q5M7Z0

RNFT1, E3 ubiquitin-protein ligase RNFT1, humanhuman

Predictions only

Length 435 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNFT1Q5M7Z0 RASGEF1A-204ENST00000395810 3235 ntAPPRIS P3 TSL 1 (best) BASIC13.49□□□□□ -0.25
RNFT1Q5M7Z0 PRKAG3-206ENST00000529249 2222 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
RNFT1Q5M7Z0 TMEM19-201ENST00000266673 5656 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
RNFT1Q5M7Z0 PCOLCE-201ENST00000223061 1702 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
RNFT1Q5M7Z0 GINS3-203ENST00000426538 1728 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
RNFT1Q5M7Z0 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC13.49□□□□□ -0.25
RNFT1Q5M7Z0 AC126755.1-201ENST00000525846 6405 ntBASIC13.49□□□□□ -0.25
RNFT1Q5M7Z0 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC13.49□□□□□ -0.25
RNFT1Q5M7Z0 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC13.49□□□□□ -0.25
RNFT1Q5M7Z0 GCLM-201ENST00000370238 4857 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
RNFT1Q5M7Z0 PEF1-201ENST00000373703 1629 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
RNFT1Q5M7Z0 STX1A-201ENST00000222812 2095 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
RNFT1Q5M7Z0 GCNT7-201ENST00000243913 2064 ntTSL 2 BASIC13.49□□□□□ -0.25
RNFT1Q5M7Z0 STX1A-204ENST00000395156 2050 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
RNFT1Q5M7Z0 ARF6-201ENST00000298316 3865 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
RNFT1Q5M7Z0 CERS3-202ENST00000394113 2045 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
RNFT1Q5M7Z0 RPL23A-204ENST00000422514 1562 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
RNFT1Q5M7Z0 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC13.49□□□□□ -0.25
RNFT1Q5M7Z0 TFPI2-201ENST00000222543 2444 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
RNFT1Q5M7Z0 SGCE-205ENST00000437425 1508 ntTSL 2 BASIC13.49□□□□□ -0.25
RNFT1Q5M7Z0 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
RNFT1Q5M7Z0 SEPT12-201ENST00000268231 1469 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
RNFT1Q5M7Z0 SCML4-201ENST00000369020 1491 ntAPPRIS P1 TSL 5 BASIC13.48□□□□□ -0.25
RNFT1Q5M7Z0 KCNT1-214ENST00000631073 3948 ntAPPRIS ALT2 TSL 5 BASIC13.48□□□□□ -0.25
RNFT1Q5M7Z0 ANXA6-202ENST00000377751 1430 ntTSL 2 BASIC13.48□□□□□ -0.25
RNFT1Q5M7Z0 SELENOS-201ENST00000398226 1439 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
RNFT1Q5M7Z0 CNDP1-201ENST00000358821 2215 ntAPPRIS P2 TSL 1 (best) BASIC13.48□□□□□ -0.25
RNFT1Q5M7Z0 PTGES3L-AARSD1-204ENST00000421990 2150 ntAPPRIS P1 TSL 2 BASIC13.48□□□□□ -0.25
RNFT1Q5M7Z0 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
RNFT1Q5M7Z0 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
RNFT1Q5M7Z0 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC13.48□□□□□ -0.25
RNFT1Q5M7Z0 LINC00900-201ENST00000499809 3322 ntTSL 2 BASIC13.48□□□□□ -0.25
RNFT1Q5M7Z0 SLC25A4-201ENST00000281456 4440 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
RNFT1Q5M7Z0 DLEU2-201ENST00000235290 1739 ntTSL 5 BASIC13.48□□□□□ -0.25
RNFT1Q5M7Z0 DPP6-203ENST00000404039 4798 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
RNFT1Q5M7Z0 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC13.48□□□□□ -0.25
RNFT1Q5M7Z0 ZNF662-201ENST00000328199 3186 ntAPPRIS P1 TSL 5 BASIC13.48□□□□□ -0.25
RNFT1Q5M7Z0 MAGEA2-209ENST00000623806 2025 ntAPPRIS P1 TSL 2 BASIC13.48□□□□□ -0.25
RNFT1Q5M7Z0 TSEN2-201ENST00000284995 2381 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
RNFT1Q5M7Z0 NCR3-201ENST00000340027 1042 ntAPPRIS P3 TSL 1 (best) BASIC13.48□□□□□ -0.25
RNFT1Q5M7Z0 MIR769-201ENST00000390225 118 ntBASIC13.48□□□□□ -0.25
RNFT1Q5M7Z0 SMARCE1-204ENST00000400122 1263 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
RNFT1Q5M7Z0 ACTG1P2-201ENST00000415776 1125 ntBASIC13.48□□□□□ -0.25
RNFT1Q5M7Z0 AC080129.2-201ENST00000418353 430 ntTSL 3 BASIC13.48□□□□□ -0.25
RNFT1Q5M7Z0 ACTG1P11-201ENST00000425411 1125 ntBASIC13.48□□□□□ -0.25
RNFT1Q5M7Z0 KLK11-204ENST00000453757 1174 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
RNFT1Q5M7Z0 OARD1-204ENST00000464633 717 ntTSL 2 BASIC13.48□□□□□ -0.25
RNFT1Q5M7Z0 AP003419.2-201ENST00000543494 711 ntAPPRIS P1 TSL 3 BASIC13.48□□□□□ -0.25
RNFT1Q5M7Z0 AC007333.1-201ENST00000568286 630 ntTSL 3 BASIC13.48□□□□□ -0.25
RNFT1Q5M7Z0 SMARCE1-213ENST00000578044 1184 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
RNFT1Q5M7Z0 SMARCE1-216ENST00000580419 1228 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
RNFT1Q5M7Z0 SELENOW-204ENST00000595615 535 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
RNFT1Q5M7Z0 CLEC11A-202ENST00000599973 1026 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
RNFT1Q5M7Z0 AC026740.1-201ENST00000607068 791 ntBASIC13.48□□□□□ -0.25
RNFT1Q5M7Z0 AL158211.2-201ENST00000607282 395 ntBASIC13.48□□□□□ -0.25
RNFT1Q5M7Z0 SELENOW-216ENST00000612212 875 ntTSL 5 BASIC13.48□□□□□ -0.25
RNFT1Q5M7Z0 LINC01668-201ENST00000635001 513 ntTSL 4 BASIC13.48□□□□□ -0.25
RNFT1Q5M7Z0 INHBA-203ENST00000442711 1632 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
RNFT1Q5M7Z0 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
RNFT1Q5M7Z0 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
RNFT1Q5M7Z0 STAR-201ENST00000276449 1929 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
RNFT1Q5M7Z0 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
RNFT1Q5M7Z0 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC13.48□□□□□ -0.25
RNFT1Q5M7Z0 ANKMY2-201ENST00000306999 2555 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
RNFT1Q5M7Z0 SLCO5A1-201ENST00000260126 9076 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
RNFT1Q5M7Z0 ETV5-206ENST00000434744 2213 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
RNFT1Q5M7Z0 RMND1-202ENST00000367303 1854 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
RNFT1Q5M7Z0 AATBC-203ENST00000448247 1889 ntTSL 2 BASIC13.48□□□□□ -0.25
RNFT1Q5M7Z0 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC13.48□□□□□ -0.25
RNFT1Q5M7Z0 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC13.48□□□□□ -0.25
RNFT1Q5M7Z0 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC13.48□□□□□ -0.25
RNFT1Q5M7Z0 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
RNFT1Q5M7Z0 DBH-AS1-201ENST00000425189 2139 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
RNFT1Q5M7Z0 HYAL2-201ENST00000357750 2055 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
RNFT1Q5M7Z0 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC13.48□□□□□ -0.25
RNFT1Q5M7Z0 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC13.47□□□□□ -0.25
RNFT1Q5M7Z0 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC13.47□□□□□ -0.25
RNFT1Q5M7Z0 CENPK-202ENST00000396679 1734 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
RNFT1Q5M7Z0 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
RNFT1Q5M7Z0 TUBGCP2-203ENST00000368563 4218 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
RNFT1Q5M7Z0 PTPN21-201ENST00000328736 6089 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
RNFT1Q5M7Z0 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
RNFT1Q5M7Z0 GRN-201ENST00000053867 2342 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
RNFT1Q5M7Z0 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
RNFT1Q5M7Z0 AC244394.1-201ENST00000435000 1665 ntBASIC13.47□□□□□ -0.25
RNFT1Q5M7Z0 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
RNFT1Q5M7Z0 AC006058.4-201ENST00000624016 1670 ntBASIC13.47□□□□□ -0.25
RNFT1Q5M7Z0 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC13.47□□□□□ -0.25
RNFT1Q5M7Z0 MSTO1-202ENST00000368341 2245 ntTSL 2 BASIC13.47□□□□□ -0.25
RNFT1Q5M7Z0 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
RNFT1Q5M7Z0 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
RNFT1Q5M7Z0 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC13.47□□□□□ -0.25
RNFT1Q5M7Z0 TMCO5B-204ENST00000529696 1568 ntTSL 2 BASIC13.47□□□□□ -0.25
RNFT1Q5M7Z0 ZMYND15-201ENST00000269289 2448 ntTSL 5 BASIC13.47□□□□□ -0.25
RNFT1Q5M7Z0 MRPS12-201ENST00000308018 1207 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
RNFT1Q5M7Z0 MRPL55-214ENST00000366741 603 ntAPPRIS P1 TSL 2 BASIC13.47□□□□□ -0.25
RNFT1Q5M7Z0 MRPL55-218ENST00000366747 603 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
RNFT1Q5M7Z0 TMEM254-204ENST00000372277 366 ntTSL 5 BASIC13.47□□□□□ -0.25
RNFT1Q5M7Z0 PPIE-203ENST00000372830 1198 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
RNFT1Q5M7Z0 DKFZp779M0652-201ENST00000378779 649 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 34.9 ms