Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 LRRC57-202ENST00000397130 2384 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
COL4A4P53420 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
COL4A4P53420 CCT4-201ENST00000394440 2520 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
COL4A4P53420 HVCN1-202ENST00000356742 2189 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
COL4A4P53420 AL391244.1-206ENST00000447725 1843 ntTSL 5 BASIC15.67■□□□□ 0.1
COL4A4P53420 EGOT-201ENST00000414938 1464 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
COL4A4P53420 RSPO1-202ENST00000401068 2320 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
COL4A4P53420 PPP1R37-201ENST00000221462 3163 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
COL4A4P53420 FAM3B-201ENST00000357985 1088 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
COL4A4P53420 BGLAP-201ENST00000368272 732 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
COL4A4P53420 PDCD5-202ENST00000379316 154 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
COL4A4P53420 AC019118.2-201ENST00000425776 718 ntTSL 5 BASIC15.67■□□□□ 0.1
COL4A4P53420 AC114763.1-201ENST00000431985 928 ntTSL 2 BASIC15.67■□□□□ 0.1
COL4A4P53420 AP000696.1-201ENST00000457669 1133 ntTSL 3 BASIC15.67■□□□□ 0.1
COL4A4P53420 AC091564.6-201ENST00000526633 487 ntTSL 3 BASIC15.67■□□□□ 0.1
COL4A4P53420 RN7SL596P-201ENST00000582123 288 ntBASIC15.67■□□□□ 0.1
COL4A4P53420 PDCD5-208ENST00000592786 468 ntTSL 3 BASIC15.67■□□□□ 0.1
COL4A4P53420 MIA-206ENST00000597784 455 ntAPPRIS P1 TSL 3 BASIC15.67■□□□□ 0.1
COL4A4P53420 LINC00431-202ENST00000636375 159 ntBASIC15.67■□□□□ 0.1
COL4A4P53420 CSAG3-203ENST00000638835 793 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
COL4A4P53420 CSAG2-204ENST00000640702 793 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
COL4A4P53420 AC023632.2-201ENST00000523011 1789 ntTSL 2 BASIC15.67■□□□□ 0.1
COL4A4P53420 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
COL4A4P53420 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
COL4A4P53420 FUCA2-201ENST00000002165 2356 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
COL4A4P53420 PCED1B-201ENST00000432328 1862 ntAPPRIS P1 TSL 3 BASIC15.66■□□□□ 0.1
COL4A4P53420 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
COL4A4P53420 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
COL4A4P53420 LONP1-213ENST00000590729 2626 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
COL4A4P53420 AC073082.1-201ENST00000602369 2103 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
COL4A4P53420 PLEKHB2-207ENST00000438882 1460 ntTSL 2 BASIC15.66■□□□□ 0.1
COL4A4P53420 LINC01229-201ENST00000561510 1494 ntTSL 5 BASIC15.66■□□□□ 0.1
COL4A4P53420 RASGEF1B-202ENST00000335927 1756 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
COL4A4P53420 CCDC169-SOHLH2-201ENST00000511166 2051 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
COL4A4P53420 KHK-201ENST00000260598 2397 ntAPPRIS P5 TSL 2 BASIC15.66■□□□□ 0.1
COL4A4P53420 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
COL4A4P53420 AC008741.2-201ENST00000612792 3115 ntBASIC15.66■□□□□ 0.1
COL4A4P53420 ZCCHC17-202ENST00000373714 1730 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
COL4A4P53420 COPS7B-205ENST00000409295 1009 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
COL4A4P53420 BX276092.5-201ENST00000439926 886 ntTSL 5 BASIC15.66■□□□□ 0.1
COL4A4P53420 AL096772.1-201ENST00000451135 781 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
COL4A4P53420 LAMA4-209ENST00000453937 645 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
COL4A4P53420 NPLOC4-209ENST00000572760 946 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
COL4A4P53420 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
COL4A4P53420 PCED1B-202ENST00000546455 2328 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
COL4A4P53420 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
COL4A4P53420 BCAR3-201ENST00000260502 3171 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
COL4A4P53420 SCNN1D-205ENST00000379116 3044 ntAPPRIS P2 TSL 5 BASIC15.66■□□□□ 0.1
COL4A4P53420 PDP1-203ENST00000517764 2140 ntAPPRIS P3 TSL 2 BASIC15.66■□□□□ 0.1
COL4A4P53420 NDRG2-226ENST00000554104 2146 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
COL4A4P53420 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
COL4A4P53420 VASH2-204ENST00000366966 1369 ntTSL 5 BASIC15.66■□□□□ 0.1
COL4A4P53420 SNAPC1-201ENST00000216294 2656 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
COL4A4P53420 MBP-202ENST00000355994 2772 ntTSL 5 BASIC15.65■□□□□ 0.1
COL4A4P53420 TDRD10-201ENST00000368480 1776 ntAPPRIS ALT2 TSL 2 BASIC15.65■□□□□ 0.1
COL4A4P53420 CNKSR1-201ENST00000361530 2625 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
COL4A4P53420 C19orf57-201ENST00000346736 2489 ntAPPRIS P2 TSL 2 BASIC15.65■□□□□ 0.1
COL4A4P53420 AC060234.2-201ENST00000428825 1610 ntTSL 5 BASIC15.65■□□□□ 0.1
COL4A4P53420 GINS3-203ENST00000426538 1728 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
COL4A4P53420 FAM103A1-201ENST00000304191 1568 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
COL4A4P53420 Z84468.1-201ENST00000626321 1408 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
COL4A4P53420 GPN1-212ENST00000616939 1832 ntAPPRIS P2 TSL 1 (best) BASIC15.65■□□□□ 0.1
COL4A4P53420 MMP7-201ENST00000260227 1125 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
COL4A4P53420 NPFF-201ENST00000267017 592 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
COL4A4P53420 SPATA8-201ENST00000328504 1083 ntAPPRIS P2 TSL 1 (best) BASIC15.65■□□□□ 0.1
COL4A4P53420 MAPK3-204ENST00000395200 997 ntTSL 3 BASIC15.65■□□□□ 0.1
COL4A4P53420 INS-IGF2-202ENST00000397270 828 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
COL4A4P53420 RN7SKP109-201ENST00000410592 316 ntBASIC15.65■□□□□ 0.1
COL4A4P53420 AC254562.2-201ENST00000428786 667 ntTSL 3 BASIC15.65■□□□□ 0.1
COL4A4P53420 AL139241.1-201ENST00000433374 1168 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
COL4A4P53420 AC092638.2-201ENST00000441105 947 ntBASIC15.65■□□□□ 0.1
COL4A4P53420 LINC02081-203ENST00000591384 867 ntTSL 3 BASIC15.65■□□□□ 0.1
COL4A4P53420 AC008825.2-201ENST00000603374 718 ntBASIC15.65■□□□□ 0.1
COL4A4P53420 MIR6769A-201ENST00000617340 73 ntBASIC15.65■□□□□ 0.1
COL4A4P53420 TTC23L-209ENST00000638320 1185 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
COL4A4P53420 TMEM258-207ENST00000543510 1692 ntTSL 2 BASIC15.65■□□□□ 0.1
COL4A4P53420 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
COL4A4P53420 AC068946.1-202ENST00000318673 2745 ntAPPRIS P1 TSL 2 BASIC15.65■□□□□ 0.1
COL4A4P53420 CNTFR-204ENST00000610543 1926 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
COL4A4P53420 MIER1-208ENST00000401041 2552 ntTSL 2 BASIC15.65■□□□□ 0.1
COL4A4P53420 CYB5R3-205ENST00000407623 2153 ntTSL 3 BASIC15.65■□□□□ 0.1
COL4A4P53420 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
COL4A4P53420 ADSL-201ENST00000216194 1620 ntTSL 2 BASIC15.65■□□□□ 0.1
COL4A4P53420 AMHR2-201ENST00000257863 1863 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
COL4A4P53420 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC15.65■□□□□ 0.1
COL4A4P53420 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
COL4A4P53420 RNF182-206ENST00000537388 3274 ntAPPRIS P1 TSL 2 BASIC15.65■□□□□ 0.1
COL4A4P53420 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
COL4A4P53420 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
COL4A4P53420 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
COL4A4P53420 NEK11-205ENST00000507910 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
COL4A4P53420 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC15.65■□□□□ 0.1
COL4A4P53420 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC15.65■□□□□ 0.1
COL4A4P53420 TOM1L2-202ENST00000379504 2418 ntAPPRIS P1 TSL 2 BASIC15.64■□□□□ 0.09
COL4A4P53420 SGCE-204ENST00000428696 1409 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
COL4A4P53420 LINC01815-202ENST00000641468 1409 ntBASIC15.64■□□□□ 0.09
COL4A4P53420 TMEM176B-201ENST00000326442 1129 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
COL4A4P53420 NACA-202ENST00000393891 1059 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
COL4A4P53420 LIF-202ENST00000403987 592 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
COL4A4P53420 CNRIP1-202ENST00000409559 644 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 55 ms