Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 NFS1-203ENST00000374092 3012 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
NEK3P51956 EIF4G1-206ENST00000392537 5229 ntTSL 2 BASIC15.56■□□□□ 0.08
NEK3P51956 CDT1-201ENST00000301019 3240 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
NEK3P51956 LIN9-201ENST00000328205 3567 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
NEK3P51956 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
NEK3P51956 BRF1-202ENST00000379932 884 ntTSL 5 BASIC15.56■□□□□ 0.08
NEK3P51956 AC005229.1-201ENST00000392885 409 ntBASIC15.56■□□□□ 0.08
NEK3P51956 NDUFC1-203ENST00000394228 761 ntAPPRIS P1 TSL 2 BASIC15.56■□□□□ 0.08
NEK3P51956 BAATP1-201ENST00000412284 1225 ntBASIC15.56■□□□□ 0.08
NEK3P51956 RPL28-203ENST00000428193 573 ntTSL 2 BASIC15.56■□□□□ 0.08
NEK3P51956 RPL28-204ENST00000431533 590 ntTSL 2 BASIC15.56■□□□□ 0.08
NEK3P51956 HYAL1-208ENST00000457214 1084 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
NEK3P51956 FAM104B-207ENST00000489298 712 ntAPPRIS ALT2 TSL 2 BASIC15.56■□□□□ 0.08
NEK3P51956 AP001582.1-201ENST00000525856 295 ntBASIC15.56■□□□□ 0.08
NEK3P51956 ARL2-204ENST00000529384 830 ntAPPRIS P1 TSL 3 BASIC15.56■□□□□ 0.08
NEK3P51956 RPL28-207ENST00000558815 616 ntTSL 2 BASIC15.56■□□□□ 0.08
NEK3P51956 APRT-204ENST00000563655 709 ntTSL 5 BASIC15.56■□□□□ 0.08
NEK3P51956 TUBB6-213ENST00000591909 1017 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
NEK3P51956 ATF5-205ENST00000600336 682 ntTSL 2 BASIC15.56■□□□□ 0.08
NEK3P51956 MIR6752-201ENST00000618442 71 ntBASIC15.56■□□□□ 0.08
NEK3P51956 ZNF365-205ENST00000395254 4173 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
NEK3P51956 UCP3-202ENST00000426995 1406 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
NEK3P51956 EHF-210ENST00000531794 1481 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
NEK3P51956 AMT-224ENST00000635808 1610 ntTSL 5 BASIC15.56■□□□□ 0.08
NEK3P51956 ASAH1-221ENST00000636128 1608 ntTSL 5 BASIC15.56■□□□□ 0.08
NEK3P51956 FARS2-202ENST00000324331 1692 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
NEK3P51956 USE1-206ENST00000595101 1776 ntTSL 2 BASIC15.56■□□□□ 0.08
NEK3P51956 DDX49-201ENST00000247003 1830 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
NEK3P51956 NEK11-205ENST00000507910 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
NEK3P51956 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC15.56■□□□□ 0.08
NEK3P51956 RNF122-201ENST00000256257 1868 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
NEK3P51956 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
NEK3P51956 BX640514.1-201ENST00000583223 1918 ntBASIC15.56■□□□□ 0.08
NEK3P51956 FUCA2-201ENST00000002165 2356 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
NEK3P51956 HSPB7-202ENST00000375718 2415 ntTSL 2 BASIC15.56■□□□□ 0.08
NEK3P51956 GREM1-202ENST00000560830 2648 ntTSL 2 BASIC15.56■□□□□ 0.08
NEK3P51956 STAT1-203ENST00000392323 2723 ntAPPRIS ALT1 TSL 2 BASIC15.56■□□□□ 0.08
NEK3P51956 SLC25A35-201ENST00000380067 2785 ntTSL 2 BASIC15.56■□□□□ 0.08
NEK3P51956 TOP3B-201ENST00000357179 2863 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
NEK3P51956 SLC1A7-206ENST00000620347 2873 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
NEK3P51956 FYN-202ENST00000354650 3628 ntAPPRIS P4 TSL 1 (best) BASIC15.56■□□□□ 0.08
NEK3P51956 TERT-201ENST00000310581 4018 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
NEK3P51956 MROH1-201ENST00000326134 5183 ntAPPRIS P3 TSL 5 BASIC15.56■□□□□ 0.08
NEK3P51956 FAM149B1-201ENST00000242505 5408 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
NEK3P51956 SIN3B-202ENST00000379803 5129 ntAPPRIS P3 TSL 1 (best) BASIC15.55■□□□□ 0.08
NEK3P51956 CACTIN-203ENST00000429344 3612 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
NEK3P51956 MYADM-205ENST00000391771 3111 ntAPPRIS P1 TSL 2 BASIC15.55■□□□□ 0.08
NEK3P51956 EPHX2-207ENST00000521400 3140 ntAPPRIS P2 TSL 1 (best) BASIC15.55■□□□□ 0.08
NEK3P51956 PCDHA7-201ENST00000356878 2922 ntAPPRIS ALT2 BASIC15.55■□□□□ 0.08
NEK3P51956 COL9A2-202ENST00000372748 2862 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
NEK3P51956 SLC22A12-203ENST00000377572 2887 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
NEK3P51956 RSPH9-201ENST00000372163 2534 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
NEK3P51956 KCNJ18-201ENST00000567955 2196 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
NEK3P51956 OS9-204ENST00000389146 2091 ntTSL 2 BASIC15.55■□□□□ 0.08
NEK3P51956 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC15.55■□□□□ 0.08
NEK3P51956 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
NEK3P51956 TBP-206ENST00000540980 1701 ntAPPRIS ALT2 TSL 2 BASIC15.55■□□□□ 0.08
NEK3P51956 PSMC5-209ENST00000580864 1552 ntTSL 5 BASIC15.55■□□□□ 0.08
NEK3P51956 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
NEK3P51956 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
NEK3P51956 TEX12-201ENST00000280358 1147 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
NEK3P51956 CGB5-201ENST00000301408 841 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
NEK3P51956 FAM169B-201ENST00000332908 579 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
NEK3P51956 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC15.55■□□□□ 0.08
NEK3P51956 NAA10-201ENST00000370009 837 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
NEK3P51956 NAA10-203ENST00000370015 1002 ntTSL 5 BASIC15.55■□□□□ 0.08
NEK3P51956 KRTAP1-4-201ENST00000377747 408 ntAPPRIS P1 BASIC15.55■□□□□ 0.08
NEK3P51956 ARRB2-203ENST00000381488 1236 ntTSL 2 BASIC15.55■□□□□ 0.08
NEK3P51956 MIR658-201ENST00000385210 100 ntBASIC15.55■□□□□ 0.08
NEK3P51956 IGHV3-7-201ENST00000390598 430 ntAPPRIS P1 BASIC15.55■□□□□ 0.08
NEK3P51956 ATP5D-202ENST00000395633 704 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
NEK3P51956 MIR1909-201ENST00000411312 80 ntBASIC15.55■□□□□ 0.08
NEK3P51956 AC243836.1-201ENST00000416696 438 ntTSL 3 BASIC15.55■□□□□ 0.08
NEK3P51956 IQCF3-202ENST00000440739 505 ntAPPRIS P1 TSL 2 BASIC15.55■□□□□ 0.08
NEK3P51956 AC012441.1-201ENST00000446669 685 ntBASIC15.55■□□□□ 0.08
NEK3P51956 SNHG11-212ENST00000449351 954 ntTSL 5 BASIC15.55■□□□□ 0.08
NEK3P51956 AC022210.1-201ENST00000449856 793 ntBASIC15.55■□□□□ 0.08
NEK3P51956 CROCCP4-201ENST00000457096 498 ntBASIC15.55■□□□□ 0.08
NEK3P51956 AC093433.1-201ENST00000458048 571 ntBASIC15.55■□□□□ 0.08
NEK3P51956 AL121845.2-201ENST00000467211 252 ntAPPRIS P1 TSL 3 BASIC15.55■□□□□ 0.08
NEK3P51956 LIMS3-203ENST00000480744 1197 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
NEK3P51956 AP001889.1-201ENST00000525414 633 ntBASIC15.55■□□□□ 0.08
NEK3P51956 LINC01595-201ENST00000555406 639 ntTSL 3 BASIC15.55■□□□□ 0.08
NEK3P51956 RORA-AS1-205ENST00000559824 761 ntTSL 3 BASIC15.55■□□□□ 0.08
NEK3P51956 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC15.55■□□□□ 0.08
NEK3P51956 TPTE2P2-205ENST00000606711 505 ntTSL 5 BASIC15.55■□□□□ 0.08
NEK3P51956 ARNT2-204ENST00000527771 2458 ntAPPRIS ALT1 TSL 2 BASIC15.55■□□□□ 0.08
NEK3P51956 ABLIM3-206ENST00000506113 4569 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
NEK3P51956 JPH4-201ENST00000356300 4278 ntAPPRIS P2 TSL 1 (best) BASIC15.54■□□□□ 0.08
NEK3P51956 HM13-201ENST00000335574 1809 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
NEK3P51956 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC15.54■□□□□ 0.08
NEK3P51956 AL138799.1-201ENST00000448213 1675 ntBASIC15.54■□□□□ 0.08
NEK3P51956 ME2-201ENST00000321341 9415 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
NEK3P51956 KDM3A-201ENST00000312912 4886 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
NEK3P51956 OR2V1-205ENST00000642036 2609 ntAPPRIS P1 BASIC15.54■□□□□ 0.08
NEK3P51956 CYB561D2-202ENST00000418577 1533 ntAPPRIS P1 TSL 2 BASIC15.54■□□□□ 0.08
NEK3P51956 RNF182-208ENST00000544682 3495 ntAPPRIS P1 TSL 4 BASIC15.54■□□□□ 0.08
NEK3P51956 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC15.54■□□□□ 0.08
NEK3P51956 RNPS1-216ENST00000565678 2298 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
NEK3P51956 HS2ST1-201ENST00000370550 6736 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 12.5 ms