Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 AC105219.2-201ENST00000527908 299 ntTSL 4 BASIC17.3■□□□□ 0.36
CTCFP49711 POLD4-206ENST00000530584 899 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CTCFP49711 APOPT1-215ENST00000556253 783 ntTSL 3 BASIC17.3■□□□□ 0.36
CTCFP49711 AC107871.2-202ENST00000563057 396 ntTSL 2 BASIC17.3■□□□□ 0.36
CTCFP49711 AC018846.1-201ENST00000568231 183 ntBASIC17.3■□□□□ 0.36
CTCFP49711 AC040162.4-201ENST00000574912 1185 ntAPPRIS P1 TSL 3 BASIC17.3■□□□□ 0.36
CTCFP49711 AC145207.3-201ENST00000576784 529 ntTSL 5 BASIC17.3■□□□□ 0.36
CTCFP49711 AL157813.1-201ENST00000612996 587 ntBASIC17.3■□□□□ 0.36
CTCFP49711 PRKAB1-210ENST00000630317 258 ntTSL 2 BASIC17.3■□□□□ 0.36
CTCFP49711 TTC23L-209ENST00000638320 1185 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
CTCFP49711 CYP4F11-203ENST00000402119 3161 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CTCFP49711 CAMK2B-208ENST00000395747 1557 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CTCFP49711 PDE4C-202ENST00000355502 5979 ntAPPRIS P3 TSL 2 BASIC17.3■□□□□ 0.36
CTCFP49711 C16orf45-209ENST00000566490 1854 ntTSL 5 BASIC17.3■□□□□ 0.36
CTCFP49711 ARHGAP39-202ENST00000377307 4673 ntAPPRIS P3 TSL 5 BASIC17.3■□□□□ 0.36
CTCFP49711 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CTCFP49711 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CTCFP49711 ADRA2A-201ENST00000280155 3745 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
CTCFP49711 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC17.3■□□□□ 0.36
CTCFP49711 SHANK1-204ENST00000391814 6622 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
CTCFP49711 MEF2C-AS1-210ENST00000514011 1754 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CTCFP49711 PTPRN2-205ENST00000409483 4711 ntAPPRIS ALT2 TSL 2 BASIC17.3■□□□□ 0.36
CTCFP49711 AC109460.1-201ENST00000567209 1478 ntTSL 3 BASIC17.3■□□□□ 0.36
CTCFP49711 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
CTCFP49711 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC17.3■□□□□ 0.36
CTCFP49711 AP000593.2-201ENST00000542775 1433 ntBASIC17.3■□□□□ 0.36
CTCFP49711 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC17.3■□□□□ 0.36
CTCFP49711 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC17.29■□□□□ 0.36
CTCFP49711 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CTCFP49711 AGER-201ENST00000375055 1369 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CTCFP49711 DDHD2-201ENST00000397166 4921 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
CTCFP49711 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
CTCFP49711 ADSL-201ENST00000216194 1620 ntTSL 2 BASIC17.29■□□□□ 0.36
CTCFP49711 FMR1-215ENST00000616382 1648 ntTSL 5 BASIC17.29■□□□□ 0.36
CTCFP49711 AL158070.2-201ENST00000623713 1621 ntBASIC17.29■□□□□ 0.36
CTCFP49711 MED17-201ENST00000251871 5142 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CTCFP49711 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CTCFP49711 SLC50A1-203ENST00000368404 1300 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CTCFP49711 CCL18-201ENST00000616054 1324 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CTCFP49711 EVA1A-202ENST00000393913 1802 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
CTCFP49711 NUDT2-201ENST00000346365 960 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CTCFP49711 MBP-201ENST00000354542 575 ntTSL 2 BASIC17.29■□□□□ 0.36
CTCFP49711 NUDT2-202ENST00000379155 1002 ntAPPRIS P1 TSL 3 BASIC17.29■□□□□ 0.36
CTCFP49711 AL583839.1-201ENST00000445280 691 ntTSL 3 BASIC17.29■□□□□ 0.36
CTCFP49711 CDC23-208ENST00000505120 455 ntTSL 3 BASIC17.29■□□□□ 0.36
CTCFP49711 BCL2L12P1-201ENST00000508390 733 ntBASIC17.29■□□□□ 0.36
CTCFP49711 ZNF576-205ENST00000529930 830 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
CTCFP49711 RBM4-211ENST00000530235 1011 ntTSL 3 BASIC17.29■□□□□ 0.36
CTCFP49711 AP000866.5-201ENST00000531241 445 ntTSL 5 BASIC17.29■□□□□ 0.36
CTCFP49711 AC025154.2-201ENST00000550530 445 ntTSL 3 BASIC17.29■□□□□ 0.36
CTCFP49711 AL132639.2-202ENST00000553520 467 ntTSL 2 BASIC17.29■□□□□ 0.36
CTCFP49711 AC130456.3-201ENST00000561762 633 ntTSL 3 BASIC17.29■□□□□ 0.36
CTCFP49711 ANAPC11-206ENST00000571874 636 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
CTCFP49711 NRN1L-202ENST00000576147 681 ntAPPRIS ALT2 TSL 2 BASIC17.29■□□□□ 0.36
CTCFP49711 BRSK1-203ENST00000585418 1104 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CTCFP49711 AC005041.3-201ENST00000606287 649 ntBASIC17.29■□□□□ 0.36
CTCFP49711 AC234782.2-201ENST00000614615 1240 ntTSL 2 BASIC17.29■□□□□ 0.36
CTCFP49711 Metazoa_SRP.127-201ENST00000614914 302 ntBASIC17.29■□□□□ 0.36
CTCFP49711 NUDT2-204ENST00000618590 825 ntAPPRIS P1 TSL 3 BASIC17.29■□□□□ 0.36
CTCFP49711 AQP7-213ENST00000624075 1270 ntTSL 2 BASIC17.29■□□□□ 0.36
CTCFP49711 SLC12A5-216ENST00000626701 617 ntTSL 3 BASIC17.29■□□□□ 0.36
CTCFP49711 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CTCFP49711 SFRP1-201ENST00000220772 4492 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CTCFP49711 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CTCFP49711 ME2P1-201ENST00000426028 1970 ntBASIC17.29■□□□□ 0.36
CTCFP49711 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC17.29■□□□□ 0.36
CTCFP49711 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
CTCFP49711 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC17.29■□□□□ 0.36
CTCFP49711 DYM-201ENST00000269445 5049 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CTCFP49711 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CTCFP49711 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC17.29■□□□□ 0.36
CTCFP49711 NME7-201ENST00000367811 1642 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
CTCFP49711 APLN-201ENST00000429967 3205 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CTCFP49711 KEAP1-201ENST00000171111 2955 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CTCFP49711 STAT3-201ENST00000264657 5047 ntAPPRIS P4 TSL 1 (best) BASIC17.28■□□□□ 0.36
CTCFP49711 TAF3-201ENST00000344293 4872 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CTCFP49711 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
CTCFP49711 ASB1-201ENST00000264607 6994 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CTCFP49711 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CTCFP49711 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC17.28■□□□□ 0.36
CTCFP49711 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CTCFP49711 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CTCFP49711 CMTM5-202ENST00000342473 725 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CTCFP49711 RBM38-204ENST00000371219 760 ntTSL 2 BASIC17.28■□□□□ 0.36
CTCFP49711 CACNG7-202ENST00000391766 631 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CTCFP49711 HLA-DMA-203ENST00000395305 777 ntBASIC17.28■□□□□ 0.36
CTCFP49711 CMTM5-205ENST00000397227 818 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CTCFP49711 AC010141.1-201ENST00000411585 623 ntBASIC17.28■□□□□ 0.36
CTCFP49711 AC012506.1-201ENST00000423706 525 ntTSL 4 BASIC17.28■□□□□ 0.36
CTCFP49711 FAM92A-202ENST00000423990 914 ntTSL 5 BASIC17.28■□□□□ 0.36
CTCFP49711 AC019118.2-201ENST00000425776 718 ntTSL 5 BASIC17.28■□□□□ 0.36
CTCFP49711 LAMA4-208ENST00000431543 1080 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CTCFP49711 FTH1P22-201ENST00000456305 520 ntBASIC17.28■□□□□ 0.36
CTCFP49711 AC105254.1-201ENST00000507782 621 ntTSL 4 BASIC17.28■□□□□ 0.36
CTCFP49711 GDNF-207ENST00000515058 764 ntTSL 5 BASIC17.28■□□□□ 0.36
CTCFP49711 CMTM5-208ENST00000555731 831 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CTCFP49711 TGFB3-204ENST00000556285 1280 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CTCFP49711 MIR4313-201ENST00000580760 101 ntBASIC17.28■□□□□ 0.36
CTCFP49711 AC009560.1-201ENST00000620208 434 ntBASIC17.28■□□□□ 0.36
CTCFP49711 CR392039.1-201ENST00000623217 204 ntBASIC17.28■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 83.1 ms