Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC12.6□□□□□ -0.39
HOXA1P49639 FAM58CP-201ENST00000435741 640 ntBASIC12.6□□□□□ -0.39
HOXA1P49639 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
HOXA1P49639 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC12.6□□□□□ -0.39
HOXA1P49639 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
HOXA1P49639 IGHV3OR16-6-201ENST00000568775 360 ntBASIC12.6□□□□□ -0.39
HOXA1P49639 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
HOXA1P49639 NAA38-207ENST00000576861 556 ntTSL 3 BASIC12.6□□□□□ -0.39
HOXA1P49639 CAND2-206ENST00000626378 333 ntTSL 5 BASIC12.6□□□□□ -0.39
HOXA1P49639 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
HOXA1P49639 GPR68-204ENST00000535815 2859 ntAPPRIS P2 TSL 1 (best) BASIC12.6□□□□□ -0.39
HOXA1P49639 CHMP7-201ENST00000313219 3367 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
HOXA1P49639 PNPLA5-202ENST00000381198 2000 ntTSL 2 BASIC12.6□□□□□ -0.39
HOXA1P49639 SOX21-AS1-201ENST00000438290 3287 ntTSL 2 BASIC12.6□□□□□ -0.39
HOXA1P49639 TDRD5-201ENST00000294848 3525 ntAPPRIS P3 TSL 1 (best) BASIC12.6□□□□□ -0.39
HOXA1P49639 POLD1-214ENST00000613923 3542 ntTSL 5 BASIC12.6□□□□□ -0.39
HOXA1P49639 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC12.6□□□□□ -0.39
HOXA1P49639 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC12.6□□□□□ -0.39
HOXA1P49639 PORCN-204ENST00000361988 1672 ntAPPRIS ALT1 TSL 5 BASIC12.6□□□□□ -0.39
HOXA1P49639 ZMYND15-204ENST00000573751 2409 ntTSL 2 BASIC12.6□□□□□ -0.39
HOXA1P49639 FNTB-201ENST00000246166 2834 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
HOXA1P49639 MAGEA8-205ENST00000542674 2084 ntAPPRIS P1 TSL 3 BASIC12.6□□□□□ -0.39
HOXA1P49639 PPIP5K1-209ENST00000420765 5718 ntAPPRIS ALT2 TSL 5 BASIC12.6□□□□□ -0.39
HOXA1P49639 ARHGAP27-203ENST00000428638 4242 ntAPPRIS P2 TSL 5 BASIC12.6□□□□□ -0.39
HOXA1P49639 SMARCA5-201ENST00000283131 7923 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
HOXA1P49639 OFD1-201ENST00000340096 3611 ntAPPRIS P3 TSL 1 (best) BASIC12.6□□□□□ -0.39
HOXA1P49639 ADHFE1-203ENST00000396623 1990 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
HOXA1P49639 SMIM14-201ENST00000295958 6483 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
HOXA1P49639 DCAF4-203ENST00000394234 2360 ntAPPRIS ALT2 TSL 1 (best) BASIC12.59□□□□□ -0.39
HOXA1P49639 SAFB-211ENST00000592224 3014 ntAPPRIS ALT2 TSL 1 (best) BASIC12.59□□□□□ -0.39
HOXA1P49639 ZSWIM3-201ENST00000255152 2773 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
HOXA1P49639 TBC1D26-201ENST00000437605 1868 ntAPPRIS P1 TSL 5 BASIC12.59□□□□□ -0.39
HOXA1P49639 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
HOXA1P49639 DENND3-202ENST00000424248 4740 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
HOXA1P49639 MYRIP-204ENST00000444716 2678 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
HOXA1P49639 TGFBR3-201ENST00000212355 6465 ntAPPRIS P3 TSL 1 (best) BASIC12.59□□□□□ -0.39
HOXA1P49639 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
HOXA1P49639 SNCAIP-203ENST00000379538 2588 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
HOXA1P49639 MBD1-203ENST00000339998 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC12.59□□□□□ -0.39
HOXA1P49639 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC12.59□□□□□ -0.39
HOXA1P49639 RPL15-201ENST00000307839 2730 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
HOXA1P49639 CPSF7-201ENST00000340437 3695 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
HOXA1P49639 DAXX-213ENST00000620164 2462 ntAPPRIS ALT2 TSL 5 BASIC12.59□□□□□ -0.39
HOXA1P49639 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC12.59□□□□□ -0.39
HOXA1P49639 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
HOXA1P49639 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
HOXA1P49639 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
HOXA1P49639 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC12.59□□□□□ -0.39
HOXA1P49639 AL591424.1-201ENST00000442569 1213 ntBASIC12.59□□□□□ -0.39
HOXA1P49639 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC12.59□□□□□ -0.39
HOXA1P49639 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC12.59□□□□□ -0.39
HOXA1P49639 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC12.59□□□□□ -0.39
HOXA1P49639 HNRNPUP1-201ENST00000554987 333 ntBASIC12.59□□□□□ -0.39
HOXA1P49639 MAX-210ENST00000555419 765 ntTSL 5 BASIC12.59□□□□□ -0.39
HOXA1P49639 AP000842.3-202ENST00000569238 1080 ntBASIC12.59□□□□□ -0.39
HOXA1P49639 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
HOXA1P49639 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC12.59□□□□□ -0.39
HOXA1P49639 SPIB-207ENST00000597855 564 ntTSL 4 BASIC12.59□□□□□ -0.39
HOXA1P49639 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC12.59□□□□□ -0.39
HOXA1P49639 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC12.59□□□□□ -0.39
HOXA1P49639 AC092865.6-201ENST00000642101 219 ntBASIC12.59□□□□□ -0.39
HOXA1P49639 TJP2-208ENST00000535702 3984 ntAPPRIS ALT2 TSL 2 BASIC12.59□□□□□ -0.39
HOXA1P49639 FLNA-201ENST00000344736 7932 ntAPPRIS ALT2 TSL 5 BASIC12.59□□□□□ -0.39
HOXA1P49639 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC12.59□□□□□ -0.39
HOXA1P49639 AKAP1-201ENST00000314126 2380 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
HOXA1P49639 SLCO2B1-203ENST00000428359 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC12.59□□□□□ -0.39
HOXA1P49639 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC12.59□□□□□ -0.39
HOXA1P49639 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC12.59□□□□□ -0.39
HOXA1P49639 CBFA2T3-202ENST00000327483 4033 ntAPPRIS ALT2 TSL 1 (best) BASIC12.59□□□□□ -0.39
HOXA1P49639 PRKACG-201ENST00000377276 1585 ntAPPRIS P1 BASIC12.59□□□□□ -0.39
HOXA1P49639 TNS2-219ENST00000552570 4714 ntAPPRIS ALT2 TSL 5 BASIC12.59□□□□□ -0.39
HOXA1P49639 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
HOXA1P49639 CYP1A1-207ENST00000567032 2107 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
HOXA1P49639 FAM83A-201ENST00000276699 1858 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
HOXA1P49639 RBM10-202ENST00000345781 3108 ntAPPRIS ALT2 TSL 2 BASIC12.59□□□□□ -0.39
HOXA1P49639 ATF7-205ENST00000548446 1892 ntAPPRIS ALT1 TSL 2 BASIC12.59□□□□□ -0.39
HOXA1P49639 CLCNKA-202ENST00000375692 2581 ntAPPRIS ALT1 TSL 1 (best) BASIC12.59□□□□□ -0.39
HOXA1P49639 DDX31-202ENST00000372153 3285 ntAPPRIS P2 TSL 1 (best) BASIC12.59□□□□□ -0.39
HOXA1P49639 BIRC5-201ENST00000301633 2711 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
HOXA1P49639 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
HOXA1P49639 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC12.59□□□□□ -0.39
HOXA1P49639 FAM120B-205ENST00000630384 3721 ntAPPRIS ALT2 TSL 2 BASIC12.59□□□□□ -0.39
HOXA1P49639 THAP2-201ENST00000308086 5719 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
HOXA1P49639 CDK17-201ENST00000261211 4157 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
HOXA1P49639 SERBP1-204ENST00000370995 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.39
HOXA1P49639 IGHG1-202ENST00000390548 2619 ntAPPRIS P5 BASIC12.58□□□□□ -0.39
HOXA1P49639 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.39
HOXA1P49639 RBP1-203ENST00000483943 1935 ntTSL 2 BASIC12.58□□□□□ -0.39
HOXA1P49639 RALYL-207ENST00000521695 1924 ntAPPRIS ALT2 TSL 2 BASIC12.58□□□□□ -0.39
HOXA1P49639 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC12.58□□□□□ -0.39
HOXA1P49639 CACNA1G-230ENST00000514717 6699 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.39
HOXA1P49639 SP6-201ENST00000342234 3800 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
HOXA1P49639 PLAU-202ENST00000446342 2658 ntAPPRIS ALT2 TSL 2 BASIC12.58□□□□□ -0.4
HOXA1P49639 HIPK1-205ENST00000369558 8157 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
HOXA1P49639 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC12.58□□□□□ -0.4
HOXA1P49639 SYNE3-201ENST00000334258 3275 ntAPPRIS P2 TSL 1 (best) BASIC12.58□□□□□ -0.4
HOXA1P49639 RAPSN-201ENST00000298854 1671 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
HOXA1P49639 FUT8-203ENST00000360689 5166 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
HOXA1P49639 RREB1-210ENST00000611109 3563 ntTSL 5 BASIC12.58□□□□□ -0.4
HOXA1P49639 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC12.58□□□□□ -0.4
Retrieved 100 of 98,524 protein–RNA pairs in 73.1 ms