Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 ALKBH7-202ENST00000596657 603 ntTSL 2 BASIC19.62■□□□□ 0.73
HOXC9P31274 CUTA-215ENST00000611509 1199 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
HOXC9P31274 MIR6842-201ENST00000612539 65 ntBASIC19.62■□□□□ 0.73
HOXC9P31274 LINC01783-202ENST00000614408 828 ntBASIC19.62■□□□□ 0.73
HOXC9P31274 ALKBH2-208ENST00000619381 895 ntTSL 5 BASIC19.62■□□□□ 0.73
HOXC9P31274 BX284668.2-205ENST00000619677 828 ntBASIC19.62■□□□□ 0.73
HOXC9P31274 COX6A1P2-201ENST00000620597 330 ntBASIC19.62■□□□□ 0.73
HOXC9P31274 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC19.62■□□□□ 0.73
HOXC9P31274 CDC25C-207ENST00000513970 1968 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
HOXC9P31274 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
HOXC9P31274 INTS11-204ENST00000421495 1868 ntTSL 2 BASIC19.62■□□□□ 0.73
HOXC9P31274 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
HOXC9P31274 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
HOXC9P31274 PLTP-201ENST00000354050 1731 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
HOXC9P31274 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
HOXC9P31274 UBE3C-202ENST00000389103 1626 ntTSL 5 BASIC19.62■□□□□ 0.73
HOXC9P31274 LINC00691-201ENST00000432505 2232 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
HOXC9P31274 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC19.61■□□□□ 0.73
HOXC9P31274 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
HOXC9P31274 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
HOXC9P31274 SMPDL3B-201ENST00000373888 1548 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
HOXC9P31274 GPR84-201ENST00000267015 1497 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
HOXC9P31274 TRPC6-203ENST00000360497 2631 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
HOXC9P31274 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC19.61■□□□□ 0.73
HOXC9P31274 ADGRB2-201ENST00000373655 5400 ntAPPRIS P4 TSL 1 (best) BASIC19.61■□□□□ 0.73
HOXC9P31274 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
HOXC9P31274 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
HOXC9P31274 ZMYND15-204ENST00000573751 2409 ntTSL 2 BASIC19.61■□□□□ 0.73
HOXC9P31274 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
HOXC9P31274 ARV1-201ENST00000310256 1335 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
HOXC9P31274 CEP70-213ENST00000489254 1811 ntAPPRIS ALT2 TSL 2 BASIC19.61■□□□□ 0.73
HOXC9P31274 AC092135.3-201ENST00000624151 1846 ntBASIC19.61■□□□□ 0.73
HOXC9P31274 KDSR-201ENST00000326575 1024 ntTSL 2 BASIC19.61■□□□□ 0.73
HOXC9P31274 KRTAP19-5-201ENST00000334151 461 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
HOXC9P31274 AL021707.5-201ENST00000420118 461 ntTSL 5 BASIC19.61■□□□□ 0.73
HOXC9P31274 TSPY25P-201ENST00000429463 745 ntBASIC19.61■□□□□ 0.73
HOXC9P31274 AC133961.1-201ENST00000503085 762 ntTSL 3 BASIC19.61■□□□□ 0.73
HOXC9P31274 LINC00461-207ENST00000506978 564 ntTSL 5 BASIC19.61■□□□□ 0.73
HOXC9P31274 MCPH1-AS1-203ENST00000525186 869 ntTSL 3 BASIC19.61■□□□□ 0.73
HOXC9P31274 MANEAL-204ENST00000525897 1294 ntTSL 2 BASIC19.61■□□□□ 0.73
HOXC9P31274 EXOSC5-204ENST00000596905 826 ntTSL 2 BASIC19.61■□□□□ 0.73
HOXC9P31274 AC242376.2-201ENST00000619355 883 ntBASIC19.61■□□□□ 0.73
HOXC9P31274 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC19.61■□□□□ 0.73
HOXC9P31274 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
HOXC9P31274 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC19.61■□□□□ 0.73
HOXC9P31274 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
HOXC9P31274 KLF11-201ENST00000305883 4030 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
HOXC9P31274 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
HOXC9P31274 CDC37-201ENST00000222005 1608 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
HOXC9P31274 NRBP1-201ENST00000233557 2887 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
HOXC9P31274 ZNF586-202ENST00000396150 1977 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
HOXC9P31274 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
HOXC9P31274 SH3KBP1-201ENST00000379697 1944 ntTSL 5 BASIC19.61■□□□□ 0.73
HOXC9P31274 SF1-209ENST00000433274 2317 ntTSL 2 BASIC19.6■□□□□ 0.73
HOXC9P31274 SNCAIP-207ENST00000504884 1885 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
HOXC9P31274 PAIP2-202ENST00000394795 2297 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
HOXC9P31274 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
HOXC9P31274 THUMPD3-AS1-212ENST00000520447 1809 ntTSL 5 BASIC19.6■□□□□ 0.73
HOXC9P31274 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
HOXC9P31274 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
HOXC9P31274 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC19.6■□□□□ 0.73
HOXC9P31274 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
HOXC9P31274 MBP-201ENST00000354542 575 ntTSL 2 BASIC19.6■□□□□ 0.73
HOXC9P31274 RNA5SP359-201ENST00000364838 113 ntBASIC19.6■□□□□ 0.73
HOXC9P31274 CITED1-202ENST00000373619 886 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
HOXC9P31274 PSMG4-203ENST00000380306 726 ntTSL 3 BASIC19.6■□□□□ 0.73
HOXC9P31274 CIDEC-202ENST00000383817 1199 ntAPPRIS ALT1 TSL 1 (best) BASIC19.6■□□□□ 0.73
HOXC9P31274 AL672291.1-201ENST00000417047 462 ntTSL 3 BASIC19.6■□□□□ 0.73
HOXC9P31274 CSTF3-202ENST00000431742 715 ntTSL 2 BASIC19.6■□□□□ 0.73
HOXC9P31274 AL080250.1-201ENST00000438676 445 ntTSL 5 BASIC19.6■□□□□ 0.73
HOXC9P31274 AIPL1-211ENST00000576776 1190 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
HOXC9P31274 SMIM22-209ENST00000591870 355 ntAPPRIS ALT2 TSL 2 BASIC19.6■□□□□ 0.73
HOXC9P31274 RN7SL736P-201ENST00000613111 269 ntBASIC19.6■□□□□ 0.73
HOXC9P31274 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
HOXC9P31274 CNN1-201ENST00000252456 1633 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
HOXC9P31274 PPP1R26-202ENST00000401470 4769 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
HOXC9P31274 RPL13-204ENST00000452368 1455 ntTSL 2 BASIC19.6■□□□□ 0.73
HOXC9P31274 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC19.6■□□□□ 0.73
HOXC9P31274 AGTPBP1-201ENST00000337006 4473 ntTSL 5 BASIC19.59■□□□□ 0.73
HOXC9P31274 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC19.59■□□□□ 0.73
HOXC9P31274 LRCH3-202ENST00000414675 2299 ntAPPRIS ALT2 TSL 2 BASIC19.59■□□□□ 0.73
HOXC9P31274 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC19.59■□□□□ 0.73
HOXC9P31274 ANKK1-201ENST00000303941 2543 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
HOXC9P31274 AHCYP4-201ENST00000419201 1315 ntBASIC19.59■□□□□ 0.73
HOXC9P31274 AC074138.1-201ENST00000611182 1303 ntBASIC19.59■□□□□ 0.73
HOXC9P31274 AL390038.1-201ENST00000419814 2481 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
HOXC9P31274 AL359258.1-201ENST00000438965 2481 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
HOXC9P31274 POMK-201ENST00000331373 1865 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
HOXC9P31274 KIAA0513-207ENST00000567328 1873 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
HOXC9P31274 MIR557-201ENST00000385239 98 ntBASIC19.59■□□□□ 0.73
HOXC9P31274 MYL3-202ENST00000395869 1012 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
HOXC9P31274 AC007952.2-201ENST00000399091 1176 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
HOXC9P31274 TRO-205ENST00000399736 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
HOXC9P31274 LAMA4-208ENST00000431543 1080 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
HOXC9P31274 CSHL1-205ENST00000438387 566 ntTSL 5 BASIC19.59■□□□□ 0.73
HOXC9P31274 IL1R2-203ENST00000441002 1106 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
HOXC9P31274 MBP-227ENST00000526111 581 ntTSL 4 BASIC19.59■□□□□ 0.73
HOXC9P31274 CFL1-206ENST00000527344 962 ntTSL 2 BASIC19.59■□□□□ 0.73
HOXC9P31274 PIN1-207ENST00000588695 648 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
HOXC9P31274 BX537318.1-201ENST00000608290 1207 ntTSL 5 BASIC19.59■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 49.2 ms