Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 AC010973.2-201ENST00000485974 1230 ntTSL 2 BASIC13.14□□□□□ -0.31
COL8A1P27658 AP003398.1-201ENST00000531124 318 ntBASIC13.14□□□□□ -0.31
COL8A1P27658 PTGR1-209ENST00000538962 1200 ntTSL 2 BASIC13.14□□□□□ -0.31
COL8A1P27658 CD63-214ENST00000552692 949 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
COL8A1P27658 AC132872.1-201ENST00000566986 1195 ntBASIC13.14□□□□□ -0.31
COL8A1P27658 FBXL12-202ENST00000585379 956 ntTSL 2 BASIC13.14□□□□□ -0.31
COL8A1P27658 PLS3-210ENST00000626746 216 ntTSL 4 BASIC13.14□□□□□ -0.31
COL8A1P27658 LINC00431-202ENST00000636375 159 ntBASIC13.14□□□□□ -0.31
COL8A1P27658 TMEM14EP-202ENST00000639378 1296 ntBASIC13.14□□□□□ -0.31
COL8A1P27658 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC13.14□□□□□ -0.31
COL8A1P27658 CCDC6-201ENST00000263102 5811 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
COL8A1P27658 PCNA-202ENST00000379160 1359 ntAPPRIS P1 TSL 5 BASIC13.14□□□□□ -0.31
COL8A1P27658 STAC-201ENST00000273183 3227 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
COL8A1P27658 ZNF804B-201ENST00000333190 4659 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
COL8A1P27658 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
COL8A1P27658 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
COL8A1P27658 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
COL8A1P27658 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
COL8A1P27658 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
COL8A1P27658 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC13.14□□□□□ -0.31
COL8A1P27658 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC13.14□□□□□ -0.31
COL8A1P27658 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
COL8A1P27658 CLUHP2-201ENST00000426660 1303 ntBASIC13.13□□□□□ -0.31
COL8A1P27658 AC245100.1-201ENST00000452996 1331 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
COL8A1P27658 KRT8P14-201ENST00000414254 1442 ntBASIC13.13□□□□□ -0.31
COL8A1P27658 KCTD1-207ENST00000580059 1425 ntAPPRIS P1 TSL 3 BASIC13.13□□□□□ -0.31
COL8A1P27658 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC13.13□□□□□ -0.31
COL8A1P27658 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC13.13□□□□□ -0.31
COL8A1P27658 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
COL8A1P27658 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC13.13□□□□□ -0.31
COL8A1P27658 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC13.13□□□□□ -0.31
COL8A1P27658 PGR-209ENST00000617858 2816 ntTSL 5 BASIC13.13□□□□□ -0.31
COL8A1P27658 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
COL8A1P27658 MROH1-207ENST00000528919 5234 ntAPPRIS P3 TSL 1 (best) BASIC13.13□□□□□ -0.31
COL8A1P27658 ING5-213ENST00000636051 4199 ntTSL 5 BASIC13.13□□□□□ -0.31
COL8A1P27658 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
COL8A1P27658 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
COL8A1P27658 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC13.13□□□□□ -0.31
COL8A1P27658 ITPRIPL2-201ENST00000381440 7247 ntAPPRIS P1 BASIC13.13□□□□□ -0.31
COL8A1P27658 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC13.13□□□□□ -0.31
COL8A1P27658 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
COL8A1P27658 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC13.13□□□□□ -0.31
COL8A1P27658 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
COL8A1P27658 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC13.13□□□□□ -0.31
COL8A1P27658 SLC25A19-205ENST00000442286 1496 ntAPPRIS P1 TSL 5 BASIC13.13□□□□□ -0.31
COL8A1P27658 TOB1-AS1-201ENST00000416263 1351 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
COL8A1P27658 CRYBB3-201ENST00000215855 867 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
COL8A1P27658 CD300A-204ENST00000392625 1163 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
COL8A1P27658 AL118508.1-202ENST00000411595 709 ntTSL 2 BASIC13.13□□□□□ -0.31
COL8A1P27658 AL139412.1-202ENST00000452465 675 ntTSL 3 BASIC13.13□□□□□ -0.31
COL8A1P27658 AC245884.1-201ENST00000457113 529 ntTSL 3 BASIC13.13□□□□□ -0.31
COL8A1P27658 AC113383.1-201ENST00000514696 582 ntTSL 4 BASIC13.13□□□□□ -0.31
COL8A1P27658 TMBIM4-208ENST00000542724 770 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
COL8A1P27658 ZNF286A-219ENST00000585194 607 ntTSL 4 BASIC13.13□□□□□ -0.31
COL8A1P27658 AC008805.1-201ENST00000590892 364 ntBASIC13.13□□□□□ -0.31
COL8A1P27658 HKR1-225ENST00000592168 566 ntTSL 4 BASIC13.13□□□□□ -0.31
COL8A1P27658 AL132994.2-201ENST00000603120 687 ntBASIC13.13□□□□□ -0.31
COL8A1P27658 AC006158.1-201ENST00000610661 249 ntBASIC13.13□□□□□ -0.31
COL8A1P27658 AC073911.3-201ENST00000624401 631 ntBASIC13.13□□□□□ -0.31
COL8A1P27658 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC13.13□□□□□ -0.31
COL8A1P27658 NTRK2-201ENST00000277120 8633 ntAPPRIS P3 TSL 1 (best) BASIC13.13□□□□□ -0.31
COL8A1P27658 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC13.13□□□□□ -0.31
COL8A1P27658 FRMD6-AS1-201ENST00000617151 2229 ntBASIC13.13□□□□□ -0.31
COL8A1P27658 PER2-201ENST00000254657 6385 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
COL8A1P27658 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
COL8A1P27658 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
COL8A1P27658 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
COL8A1P27658 TUBGCP2-203ENST00000368563 4218 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
COL8A1P27658 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC13.13□□□□□ -0.31
COL8A1P27658 ECE1-204ENST00000415912 5099 ntAPPRIS ALT1 TSL 1 (best) BASIC13.13□□□□□ -0.31
COL8A1P27658 CEP128-201ENST00000216517 1606 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
COL8A1P27658 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
COL8A1P27658 STYXL1-201ENST00000248600 1415 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
COL8A1P27658 AC239800.3-201ENST00000424684 5243 ntTSL 5 BASIC13.13□□□□□ -0.31
COL8A1P27658 E2F3P2-201ENST00000447755 1422 ntBASIC13.13□□□□□ -0.31
COL8A1P27658 APLN-201ENST00000429967 3205 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
COL8A1P27658 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC13.13□□□□□ -0.31
COL8A1P27658 TGOLN2-203ENST00000398263 6138 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
COL8A1P27658 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC13.12□□□□□ -0.31
COL8A1P27658 EPHB4-201ENST00000358173 4329 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
COL8A1P27658 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
COL8A1P27658 KMT2E-201ENST00000257745 6714 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
COL8A1P27658 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC13.12□□□□□ -0.31
COL8A1P27658 DGAT1-206ENST00000528718 3711 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
COL8A1P27658 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC13.12□□□□□ -0.31
COL8A1P27658 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC13.12□□□□□ -0.31
COL8A1P27658 ELOA-204ENST00000613537 4924 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
COL8A1P27658 TIMP3-201ENST00000266085 4603 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
COL8A1P27658 GPR84-201ENST00000267015 1497 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
COL8A1P27658 MARK4-202ENST00000300843 5209 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
COL8A1P27658 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
COL8A1P27658 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC13.12□□□□□ -0.31
COL8A1P27658 TMSB10-201ENST00000233143 496 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
COL8A1P27658 GAL-201ENST00000265643 818 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
COL8A1P27658 CXorf40A-201ENST00000359293 974 ntAPPRIS P3 TSL 2 BASIC13.12□□□□□ -0.31
COL8A1P27658 IL20-201ENST00000367096 925 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
COL8A1P27658 AC007319.1-201ENST00000453517 802 ntTSL 3 BASIC13.12□□□□□ -0.31
COL8A1P27658 AC008723.1-201ENST00000506922 207 ntBASIC13.12□□□□□ -0.31
COL8A1P27658 HNRNPA1P36-201ENST00000521313 955 ntBASIC13.12□□□□□ -0.31
COL8A1P27658 AC009779.1-201ENST00000551138 283 ntBASIC13.12□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 11 ms