Protein–RNA interactions for Protein: P22670

RFX1, MHC class II regulatory factor RFX1, humanhuman

Predictions only

Length 979 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX1P22670 PCDHB8-201ENST00000239444 2740 ntAPPRIS P1 BASIC16.41■□□□□ 0.22
RFX1P22670 KIF18B-204ENST00000593135 2745 ntAPPRIS P3 TSL 5 BASIC16.41■□□□□ 0.22
RFX1P22670 INPP5K-201ENST00000320345 2880 ntTSL 5 BASIC16.41■□□□□ 0.22
RFX1P22670 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC16.41■□□□□ 0.22
RFX1P22670 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC16.41■□□□□ 0.22
RFX1P22670 AL353997.2-201ENST00000579352 4955 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
RFX1P22670 ITGB4-206ENST00000579662 5554 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
RFX1P22670 AC007743.1-201ENST00000596663 3075 ntTSL 2 BASIC16.41■□□□□ 0.22
RFX1P22670 ANKRD50-202ENST00000515641 4212 ntTSL 2 BASIC16.41■□□□□ 0.22
RFX1P22670 ZNF559-202ENST00000393883 5095 ntAPPRIS P3 TSL 2 BASIC16.41■□□□□ 0.22
RFX1P22670 PDRG1-201ENST00000202017 1998 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
RFX1P22670 UPK3A-201ENST00000216211 1051 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
RFX1P22670 TEX30-203ENST00000376022 828 ntTSL 2 BASIC16.41■□□□□ 0.22
RFX1P22670 IGHV3-16-201ENST00000390604 425 ntAPPRIS P1 BASIC16.41■□□□□ 0.22
RFX1P22670 AL442647.2-201ENST00000429864 857 ntBASIC16.41■□□□□ 0.22
RFX1P22670 HLA-K-203ENST00000430151 1046 ntBASIC16.41■□□□□ 0.22
RFX1P22670 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
RFX1P22670 CGB8-201ENST00000448456 882 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
RFX1P22670 VDAC1P7-201ENST00000462417 847 ntBASIC16.41■□□□□ 0.22
RFX1P22670 AC108725.1-201ENST00000495472 409 ntBASIC16.41■□□□□ 0.22
RFX1P22670 PARP8-206ENST00000503665 572 ntTSL 4 BASIC16.41■□□□□ 0.22
RFX1P22670 NDRG2-226ENST00000554104 2146 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
RFX1P22670 AL133523.1-201ENST00000554537 331 ntTSL 3 BASIC16.41■□□□□ 0.22
RFX1P22670 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC16.41■□□□□ 0.22
RFX1P22670 LINC00928-204ENST00000561201 1123 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
RFX1P22670 PRSS30P-206ENST00000641773 873 ntBASIC16.41■□□□□ 0.22
RFX1P22670 ABCC1-201ENST00000399408 6594 ntTSL 5 BASIC16.41■□□□□ 0.22
RFX1P22670 ABCC1-202ENST00000399410 6552 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
RFX1P22670 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
RFX1P22670 TAS1R1-201ENST00000333172 2892 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
RFX1P22670 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
RFX1P22670 INTS4P2-202ENST00000614726 2019 ntBASIC16.41■□□□□ 0.22
RFX1P22670 ADAMTS15-201ENST00000299164 5673 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
RFX1P22670 SLC4A3-202ENST00000317151 4069 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
RFX1P22670 AC020915.1-201ENST00000413518 1469 ntAPPRIS ALT2 TSL 2 BASIC16.41■□□□□ 0.22
RFX1P22670 EID3-201ENST00000527879 1467 ntAPPRIS P1 BASIC16.41■□□□□ 0.22
RFX1P22670 MIER1-209ENST00000401042 1648 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
RFX1P22670 AP001627.1-201ENST00000437426 1754 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
RFX1P22670 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
RFX1P22670 CATSPER4-202ENST00000456354 1912 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
RFX1P22670 C6orf120-201ENST00000332290 2667 ntAPPRIS P1 BASIC16.41■□□□□ 0.22
RFX1P22670 RCC2-202ENST00000375436 4087 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
RFX1P22670 CA10-203ENST00000451037 3189 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
RFX1P22670 INSIG1-201ENST00000340368 3010 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
RFX1P22670 TLL1-206ENST00000513213 1829 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
RFX1P22670 NTRK2-202ENST00000304053 8226 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
RFX1P22670 NACC1-201ENST00000292431 4445 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
RFX1P22670 PUDP-202ENST00000412827 1376 ntTSL 2 BASIC16.4■□□□□ 0.22
RFX1P22670 PSMC3-212ENST00000602866 1373 ntAPPRIS ALT1 TSL 1 (best) BASIC16.4■□□□□ 0.22
RFX1P22670 UGDH-201ENST00000316423 3216 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
RFX1P22670 HNRNPK-204ENST00000376263 2942 ntAPPRIS P4 TSL 1 (best) BASIC16.4■□□□□ 0.22
RFX1P22670 EXOG-201ENST00000287675 2792 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
RFX1P22670 STRA6-207ENST00000535552 2631 ntTSL 2 BASIC16.4■□□□□ 0.22
RFX1P22670 F2-201ENST00000311907 2023 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
RFX1P22670 INPP5B-202ENST00000373023 4694 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
RFX1P22670 COBL-203ENST00000395542 5339 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
RFX1P22670 WDR97-201ENST00000323662 6916 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
RFX1P22670 BCAT2-201ENST00000316273 1552 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
RFX1P22670 FECH-202ENST00000382873 2526 ntAPPRIS ALT2 TSL 2 BASIC16.4■□□□□ 0.22
RFX1P22670 DUS4L-201ENST00000265720 2220 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
RFX1P22670 PIGT-202ENST00000279036 2245 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
RFX1P22670 ITPR3-201ENST00000374316 9870 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
RFX1P22670 NTMT1-202ENST00000372481 741 ntTSL 2 BASIC16.4■□□□□ 0.22
RFX1P22670 SPEG-202ENST00000396686 1086 ntTSL 3 BASIC16.4■□□□□ 0.22
RFX1P22670 ACTG1P3-201ENST00000431775 1114 ntBASIC16.4■□□□□ 0.22
RFX1P22670 GOLGA2P4-201ENST00000441462 777 ntBASIC16.4■□□□□ 0.22
RFX1P22670 CXorf40A-211ENST00000450602 1204 ntAPPRIS P3 TSL 3 BASIC16.4■□□□□ 0.22
RFX1P22670 POLR2F-208ENST00000470701 584 ntTSL 3 BASIC16.4■□□□□ 0.22
RFX1P22670 HNRNPA1P13-201ENST00000510646 963 ntBASIC16.4■□□□□ 0.22
RFX1P22670 LINC02279-201ENST00000553435 737 ntTSL 5 BASIC16.4■□□□□ 0.22
RFX1P22670 IGHV3OR16-16-201ENST00000563644 343 ntBASIC16.4■□□□□ 0.22
RFX1P22670 CMTM3-212ENST00000566121 572 ntTSL 3 BASIC16.4■□□□□ 0.22
RFX1P22670 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC16.4■□□□□ 0.22
RFX1P22670 OCEL1-213ENST00000601529 942 ntTSL 3 BASIC16.4■□□□□ 0.22
RFX1P22670 LINC00552-201ENST00000625151 2579 ntBASIC16.4■□□□□ 0.22
RFX1P22670 DACT3-203ENST00000410105 3085 ntTSL 2 BASIC16.4■□□□□ 0.22
RFX1P22670 KLK6-203ENST00000391808 1478 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
RFX1P22670 FBP1-203ENST00000415431 1487 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
RFX1P22670 GOLGA7B-201ENST00000370602 6447 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
RFX1P22670 SLC25A36-201ENST00000324194 1301 ntAPPRIS ALT1 TSL 1 (best) BASIC16.4■□□□□ 0.22
RFX1P22670 PIK3CD-206ENST00000536656 5483 ntTSL 5 BASIC16.4■□□□□ 0.22
RFX1P22670 VRK3-207ENST00000594092 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
RFX1P22670 PIK3CD-208ENST00000628140 5483 ntTSL 5 BASIC16.4■□□□□ 0.22
RFX1P22670 SLC2A14-202ENST00000396589 2335 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
RFX1P22670 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC16.4■□□□□ 0.22
RFX1P22670 CDH20-203ENST00000538374 2683 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
RFX1P22670 MUTYH-234ENST00000528013 1662 ntTSL 5 BASIC16.4■□□□□ 0.22
RFX1P22670 PI4K2B-201ENST00000264864 3540 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
RFX1P22670 KDM3A-201ENST00000312912 4886 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
RFX1P22670 SPAG1-202ENST00000388798 3852 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
RFX1P22670 CAMKK2-203ENST00000347034 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
RFX1P22670 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC16.4■□□□□ 0.22
RFX1P22670 BAG1-210ENST00000634734 3786 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.22
RFX1P22670 DNAJC22-201ENST00000395069 2059 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
RFX1P22670 RRM1-214ENST00000534285 2075 ntTSL 5 BASIC16.39■□□□□ 0.21
RFX1P22670 ZNF18-201ENST00000322748 2767 ntAPPRIS P3 TSL 2 BASIC16.39■□□□□ 0.21
RFX1P22670 ZBTB17-201ENST00000375733 2770 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
RFX1P22670 CDK12-201ENST00000430627 5918 ntAPPRIS ALT1 TSL 1 (best) BASIC16.39■□□□□ 0.21
RFX1P22670 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
RFX1P22670 TBC1D25-201ENST00000376771 4042 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 48.3 ms