Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 C19orf70-206ENST00000590389 769 ntTSL 3 BASIC11.71□□□□□ -0.53
CXCL1P09341 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC11.71□□□□□ -0.53
CXCL1P09341 AC093458.2-201ENST00000623150 629 ntBASIC11.71□□□□□ -0.53
CXCL1P09341 LILRA2-208ENST00000629481 661 ntTSL 2 BASIC11.71□□□□□ -0.53
CXCL1P09341 NEXN-201ENST00000330010 3195 ntTSL 2 BASIC11.71□□□□□ -0.53
CXCL1P09341 PAX2-202ENST00000361791 3193 ntAPPRIS ALT1 TSL 2 BASIC11.71□□□□□ -0.53
CXCL1P09341 TLX1NB-202ENST00000445873 1862 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
CXCL1P09341 YWHAEP7-202ENST00000620903 2455 ntTSL 2 BASIC11.71□□□□□ -0.53
CXCL1P09341 CD93-201ENST00000246006 6708 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
CXCL1P09341 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC11.71□□□□□ -0.54
CXCL1P09341 AL731571.1-201ENST00000617058 5428 ntBASIC11.71□□□□□ -0.54
CXCL1P09341 VILL-201ENST00000283713 2970 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
CXCL1P09341 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
CXCL1P09341 CPSF7-205ENST00000439958 3524 ntAPPRIS ALT1 TSL 1 (best) BASIC11.71□□□□□ -0.54
CXCL1P09341 CTDP1-202ENST00000299543 3380 ntAPPRIS ALT2 TSL 5 BASIC11.71□□□□□ -0.54
CXCL1P09341 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC11.71□□□□□ -0.54
CXCL1P09341 MYLIP-201ENST00000349606 2796 ntTSL 1 (best) BASIC11.71□□□□□ -0.54
CXCL1P09341 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC11.71□□□□□ -0.54
CXCL1P09341 MAPK4-206ENST00000592595 4330 ntTSL 1 (best) BASIC11.71□□□□□ -0.54
CXCL1P09341 RBM10-201ENST00000329236 3201 ntAPPRIS ALT2 TSL 1 (best) BASIC11.71□□□□□ -0.54
CXCL1P09341 GDPD5-209ENST00000529721 3222 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
CXCL1P09341 ZNF331-217ENST00000512387 2130 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
CXCL1P09341 HIF3A-218ENST00000600383 2101 ntTSL 2 BASIC11.71□□□□□ -0.54
CXCL1P09341 MKRN1-201ENST00000255977 3151 ntAPPRIS P3 TSL 1 (best) BASIC11.71□□□□□ -0.54
CXCL1P09341 SELENON-201ENST00000354177 4227 ntAPPRIS ALT2 TSL 5 BASIC11.71□□□□□ -0.54
CXCL1P09341 LRRK1-201ENST00000388948 7671 ntAPPRIS P1 TSL 5 BASIC11.71□□□□□ -0.54
CXCL1P09341 SLC5A4-201ENST00000266086 2030 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
CXCL1P09341 DDC-207ENST00000444124 2041 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
CXCL1P09341 IMMT-204ENST00000410111 3001 ntAPPRIS P4 TSL 1 (best) BASIC11.7□□□□□ -0.54
CXCL1P09341 SYNPO2L-202ENST00000394810 4921 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
CXCL1P09341 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC11.7□□□□□ -0.54
CXCL1P09341 CSF2RB-203ENST00000406230 2895 ntAPPRIS ALT2 TSL 1 (best) BASIC11.7□□□□□ -0.54
CXCL1P09341 SEMA3F-201ENST00000002829 3802 ntAPPRIS P3 TSL 1 (best) BASIC11.7□□□□□ -0.54
CXCL1P09341 GATB-201ENST00000263985 2385 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
CXCL1P09341 NUP54-201ENST00000264883 2367 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
CXCL1P09341 RBM15-202ENST00000487146 3316 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
CXCL1P09341 ECHDC1-220ENST00000528402 1449 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
CXCL1P09341 TUBGCP5-208ENST00000620435 3342 ntTSL 2 BASIC11.7□□□□□ -0.54
CXCL1P09341 PTPN5-205ENST00000477854 2826 ntTSL 5 BASIC11.7□□□□□ -0.54
CXCL1P09341 TATDN3-201ENST00000366973 2321 ntAPPRIS ALT1 TSL 1 (best) BASIC11.7□□□□□ -0.54
CXCL1P09341 RPL31-207ENST00000409711 2328 ntTSL 2 BASIC11.7□□□□□ -0.54
CXCL1P09341 BUB1B-PAK6-201ENST00000441369 2767 ntAPPRIS P1 TSL 2 BASIC11.7□□□□□ -0.54
CXCL1P09341 SYT1-204ENST00000457153 4592 ntAPPRIS ALT1 TSL 1 (best) BASIC11.7□□□□□ -0.54
CXCL1P09341 DLGAP3-201ENST00000235180 3587 ntAPPRIS P1 TSL 2 BASIC11.7□□□□□ -0.54
CXCL1P09341 AC015819.3-201ENST00000624305 2674 ntBASIC11.7□□□□□ -0.54
CXCL1P09341 RTP1-201ENST00000312295 2217 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
CXCL1P09341 FBXO5-202ENST00000367241 2221 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
CXCL1P09341 TPM3-205ENST00000328159 1771 ntTSL 2 BASIC11.7□□□□□ -0.54
CXCL1P09341 KIF1A-201ENST00000320389 8832 ntAPPRIS P1 TSL 5 BASIC11.7□□□□□ -0.54
CXCL1P09341 PHF24-201ENST00000242315 5718 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
CXCL1P09341 TMUB2-215ENST00000592825 2151 ntTSL 3 BASIC11.7□□□□□ -0.54
CXCL1P09341 BDH1-202ENST00000392378 3455 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
CXCL1P09341 ADORA2A-AS1-201ENST00000326341 2557 ntTSL 5 BASIC11.7□□□□□ -0.54
CXCL1P09341 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
CXCL1P09341 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
CXCL1P09341 ARMCX1-201ENST00000372829 2141 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
CXCL1P09341 DDT-204ENST00000404092 805 ntTSL 3 BASIC11.7□□□□□ -0.54
CXCL1P09341 RPL5P21-201ENST00000404620 815 ntBASIC11.7□□□□□ -0.54
CXCL1P09341 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC11.7□□□□□ -0.54
CXCL1P09341 HELZ2-204ENST00000467148 8064 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
CXCL1P09341 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC11.7□□□□□ -0.54
CXCL1P09341 ATP6V0A2-207ENST00000544833 1013 ntTSL 2 BASIC11.7□□□□□ -0.54
CXCL1P09341 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC11.7□□□□□ -0.54
CXCL1P09341 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC11.7□□□□□ -0.54
CXCL1P09341 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC11.7□□□□□ -0.54
CXCL1P09341 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC11.7□□□□□ -0.54
CXCL1P09341 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC11.7□□□□□ -0.54
CXCL1P09341 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC11.7□□□□□ -0.54
CXCL1P09341 AC131212.3-201ENST00000624087 4219 ntBASIC11.7□□□□□ -0.54
CXCL1P09341 ACTL8-202ENST00000617065 1670 ntAPPRIS P1 TSL 2 BASIC11.7□□□□□ -0.54
CXCL1P09341 LCOR-203ENST00000371097 4852 ntAPPRIS P3 TSL 1 (best) BASIC11.7□□□□□ -0.54
CXCL1P09341 ZNF77-201ENST00000314531 2002 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
CXCL1P09341 ENO2-205ENST00000535366 2827 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
CXCL1P09341 ABCA7-202ENST00000433129 6704 ntAPPRIS P2 TSL 1 (best) BASIC11.7□□□□□ -0.54
CXCL1P09341 FAM103A1-201ENST00000304191 1568 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
CXCL1P09341 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC11.7□□□□□ -0.54
CXCL1P09341 SUOX-202ENST00000356124 2306 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
CXCL1P09341 INPPL1-213ENST00000541756 4649 ntTSL 5 BASIC11.7□□□□□ -0.54
CXCL1P09341 TARDBP-201ENST00000240185 5367 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
CXCL1P09341 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC11.7□□□□□ -0.54
CXCL1P09341 SUPT7L-203ENST00000405491 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC11.7□□□□□ -0.54
CXCL1P09341 GGA3-214ENST00000582717 2255 ntTSL 2 BASIC11.7□□□□□ -0.54
CXCL1P09341 KLHL8-201ENST00000273963 5621 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
CXCL1P09341 AC011700.1-201ENST00000610409 2627 ntBASIC11.7□□□□□ -0.54
CXCL1P09341 SETD1B-203ENST00000604567 5969 ntAPPRIS ALT2 TSL 5 BASIC11.7□□□□□ -0.54
CXCL1P09341 KLHL13-209ENST00000545703 3322 ntAPPRIS ALT1 TSL 1 (best) BASIC11.7□□□□□ -0.54
CXCL1P09341 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC11.7□□□□□ -0.54
CXCL1P09341 AC097374.1-201ENST00000568768 6624 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
CXCL1P09341 DTX3L-201ENST00000296161 5868 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
CXCL1P09341 HDAC7-203ENST00000380610 3261 ntAPPRIS ALT2 TSL 2 BASIC11.7□□□□□ -0.54
CXCL1P09341 AL691432.1-201ENST00000596308 1422 ntBASIC11.69□□□□□ -0.54
CXCL1P09341 DAXX-213ENST00000620164 2462 ntAPPRIS ALT2 TSL 5 BASIC11.69□□□□□ -0.54
CXCL1P09341 IRF2BPL-201ENST00000238647 4157 ntAPPRIS P1 BASIC11.69□□□□□ -0.54
CXCL1P09341 ZSWIM3-201ENST00000255152 2773 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
CXCL1P09341 MICB-201ENST00000252229 2446 ntAPPRIS P3 TSL 1 (best) BASIC11.69□□□□□ -0.54
CXCL1P09341 HLA-DPA1-242ENST00000419277 1704 ntAPPRIS P2 BASIC11.69□□□□□ -0.54
CXCL1P09341 YTHDF3-205ENST00000539294 5163 ntAPPRIS P2 TSL 1 (best) BASIC11.69□□□□□ -0.54
CXCL1P09341 CD300LG-204ENST00000539718 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC11.69□□□□□ -0.54
CXCL1P09341 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
CXCL1P09341 FAM171B-201ENST00000304698 5826 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Retrieved 100 of 98,524 protein–RNA pairs in 56.1 ms