Protein–RNA interactions for Protein: P07949

RET, Proto-oncogene tyrosine-protein kinase receptor Ret, humanhuman

Predictions only

Length 1,114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RETP07949 BCL11A-203ENST00000358510 2697 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
RETP07949 RHOXF1P3-203ENST00000640298 2668 ntTSL 5 BASIC15.17■□□□□ 0.02
RETP07949 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
RETP07949 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC15.17■□□□□ 0.02
RETP07949 AC148477.4-201ENST00000613430 1793 ntBASIC15.17■□□□□ 0.02
RETP07949 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
RETP07949 GLG1-202ENST00000422840 4748 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
RETP07949 KIAA1211-203ENST00000504228 4628 ntAPPRIS P2 TSL 5 BASIC15.17■□□□□ 0.02
RETP07949 TPRKB-202ENST00000318190 819 ntTSL 5 BASIC15.17■□□□□ 0.02
RETP07949 IL27-201ENST00000356897 1044 ntAPPRIS P2 TSL 1 (best) BASIC15.17■□□□□ 0.02
RETP07949 IYD-204ENST00000392255 1180 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
RETP07949 NOC2LP1-201ENST00000450578 752 ntBASIC15.17■□□□□ 0.02
RETP07949 AL353637.1-201ENST00000451571 732 ntBASIC15.17■□□□□ 0.02
RETP07949 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC15.17■□□□□ 0.02
RETP07949 HHIP-AS1-201ENST00000503066 897 ntTSL 5 BASIC15.17■□□□□ 0.02
RETP07949 AC019193.1-201ENST00000506678 823 ntBASIC15.17■□□□□ 0.02
RETP07949 AL928654.3-201ENST00000552675 445 ntTSL 3 BASIC15.17■□□□□ 0.02
RETP07949 LINC01629-201ENST00000553613 581 ntTSL 4 BASIC15.17■□□□□ 0.02
RETP07949 CR589904.1-202ENST00000611154 660 ntTSL 5 BASIC15.17■□□□□ 0.02
RETP07949 MBD3L2B-202ENST00000637800 774 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
RETP07949 PODN-201ENST00000312553 3010 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
RETP07949 ZNF180-202ENST00000391956 3049 ntAPPRIS ALT2 TSL 2 BASIC15.17■□□□□ 0.02
RETP07949 KIAA0319L-201ENST00000325722 4789 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
RETP07949 MAP4K1-210ENST00000591517 2700 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
RETP07949 CLIC6-202ENST00000360731 3860 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
RETP07949 ABI3-201ENST00000225941 2109 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
RETP07949 AC090616.6-203ENST00000579186 1945 ntBASIC15.17■□□□□ 0.02
RETP07949 C4A-243ENST00000428956 5460 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
RETP07949 C4B-202ENST00000435363 5460 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
RETP07949 ITGB7-201ENST00000267082 2867 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
RETP07949 HLA-DQB1-205ENST00000434651 1642 ntAPPRIS P1 BASIC15.17■□□□□ 0.02
RETP07949 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC15.17■□□□□ 0.02
RETP07949 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC15.16■□□□□ 0.02
RETP07949 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
RETP07949 SYNE3-203ENST00000554873 2826 ntTSL 5 BASIC15.16■□□□□ 0.02
RETP07949 CNKSR1-201ENST00000361530 2625 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
RETP07949 DMTN-206ENST00000443491 2415 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
RETP07949 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC15.16■□□□□ 0.02
RETP07949 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
RETP07949 PRKAG3-206ENST00000529249 2222 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
RETP07949 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
RETP07949 RFX1-201ENST00000254325 4332 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
RETP07949 FBXO45-202ENST00000440469 3689 ntTSL 2 BASIC15.16■□□□□ 0.02
RETP07949 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
RETP07949 SNHG1-213ENST00000540725 1374 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
RETP07949 CACNA1A-202ENST00000573710 7569 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
RETP07949 SLC20A1-201ENST00000272542 3381 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
RETP07949 TSPOAP1-202ENST00000343736 5947 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
RETP07949 HBP1-201ENST00000222574 2829 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
RETP07949 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC15.16■□□□□ 0.02
RETP07949 ZNF687-201ENST00000324048 5378 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
RETP07949 NAGK-201ENST00000244204 1154 ntAPPRIS P5 TSL 1 (best) BASIC15.16■□□□□ 0.02
RETP07949 DPCD-202ENST00000370151 858 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
RETP07949 CITED1-202ENST00000373619 886 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
RETP07949 CST9L-201ENST00000376979 959 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
RETP07949 PIK3IP1-202ENST00000402249 999 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
RETP07949 RGS5-214ENST00000429865 754 ntTSL 3 BASIC15.16■□□□□ 0.02
RETP07949 AGTRAP-206ENST00000452018 809 ntTSL 2 BASIC15.16■□□□□ 0.02
RETP07949 RPL23A-206ENST00000496182 636 ntTSL 3 BASIC15.16■□□□□ 0.02
RETP07949 AHNAK-205ENST00000530124 701 ntAPPRIS ALT2 TSL 3 BASIC15.16■□□□□ 0.02
RETP07949 AP000808.2-201ENST00000542410 569 ntTSL 4 BASIC15.16■□□□□ 0.02
RETP07949 C14orf132-202ENST00000553782 536 ntTSL 4 BASIC15.16■□□□□ 0.02
RETP07949 EID1-202ENST00000560490 584 ntTSL 3 BASIC15.16■□□□□ 0.02
RETP07949 SAXO2-207ENST00000566861 404 ntAPPRIS ALT2 TSL 2 BASIC15.16■□□□□ 0.02
RETP07949 RN7SL163P-201ENST00000583100 276 ntBASIC15.16■□□□□ 0.02
RETP07949 AF254983.2-201ENST00000612331 135 ntBASIC15.16■□□□□ 0.02
RETP07949 GPR39-203ENST00000622084 900 ntTSL 5 BASIC15.16■□□□□ 0.02
RETP07949 LINC01669-205ENST00000624561 713 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
RETP07949 PRSS30P-206ENST00000641773 873 ntBASIC15.16■□□□□ 0.02
RETP07949 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC15.16■□□□□ 0.02
RETP07949 SCAP-215ENST00000545718 2950 ntTSL 5 BASIC15.16■□□□□ 0.02
RETP07949 CTNND2-214ENST00000511377 4336 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
RETP07949 TAS1R1-201ENST00000333172 2892 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
RETP07949 ATG4B-205ENST00000404914 2878 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
RETP07949 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
RETP07949 GSDMA-203ENST00000635792 1546 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
RETP07949 FBN1-205ENST00000560355 4109 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
RETP07949 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC15.16■□□□□ 0.02
RETP07949 AL953897.1-201ENST00000376620 1868 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
RETP07949 DARS-AS1-209ENST00000594219 1420 ntTSL 5 BASIC15.16■□□□□ 0.02
RETP07949 OTUD7A-201ENST00000307050 10770 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
RETP07949 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC15.16■□□□□ 0.02
RETP07949 FMR1-203ENST00000370470 1774 ntTSL 5 BASIC15.16■□□□□ 0.02
RETP07949 CPEB1-211ENST00000615198 2112 ntAPPRIS P2 TSL 1 (best) BASIC15.16■□□□□ 0.02
RETP07949 SLC12A9-201ENST00000354161 3273 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
RETP07949 CYP4F11-203ENST00000402119 3161 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
RETP07949 SLC12A5-201ENST00000243964 6061 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
RETP07949 ROBO3-201ENST00000397801 4569 ntAPPRIS P2 TSL 1 (best) BASIC15.16■□□□□ 0.02
RETP07949 ROBO3-220ENST00000538940 4551 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
RETP07949 EYA4-205ENST00000430974 2364 ntTSL 2 BASIC15.16■□□□□ 0.02
RETP07949 NEDD1-213ENST00000557644 2367 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
RETP07949 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
RETP07949 B3GLCT-201ENST00000343307 4254 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
RETP07949 ING5-213ENST00000636051 4199 ntTSL 5 BASIC15.15■□□□□ 0.02
RETP07949 CNN1-210ENST00000592923 1848 ntTSL 2 BASIC15.15■□□□□ 0.02
RETP07949 DGKZ-205ENST00000456247 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
RETP07949 KRT8P4-201ENST00000509735 1454 ntBASIC15.15■□□□□ 0.02
RETP07949 ZNF563-201ENST00000293725 2754 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
RETP07949 HDAC5-202ENST00000336057 5040 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
RETP07949 PLCXD2-204ENST00000477665 1721 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 83 ms