Protein–RNA interactions for Protein: O75150

RNF40, E3 ubiquitin-protein ligase BRE1B, humanhuman

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40O75150 POLM-202ENST00000335195 2444 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
RNF40O75150 STXBP6-201ENST00000323944 4132 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
RNF40O75150 CAMK2D-204ENST00000394522 2696 ntAPPRIS ALT1 TSL 1 (best) BASIC16.37■□□□□ 0.21
RNF40O75150 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
RNF40O75150 ADCY7-208ENST00000566433 2535 ntTSL 5 BASIC16.37■□□□□ 0.21
RNF40O75150 PITPNM3-201ENST00000262483 7086 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
RNF40O75150 HGNC:18790-203ENST00000433139 2254 ntAPPRIS P1 TSL 2 BASIC16.37■□□□□ 0.21
RNF40O75150 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC16.37■□□□□ 0.21
RNF40O75150 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
RNF40O75150 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC16.37■□□□□ 0.21
RNF40O75150 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
RNF40O75150 CTHRC1-201ENST00000330295 1271 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
RNF40O75150 OPA1-203ENST00000361715 6384 ntTSL 5 BASIC16.37■□□□□ 0.21
RNF40O75150 NXT2-202ENST00000372103 1085 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
RNF40O75150 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
RNF40O75150 SUMF2-205ENST00000413756 1171 ntAPPRIS ALT2 TSL 5 BASIC16.37■□□□□ 0.21
RNF40O75150 AC105940.2-201ENST00000421055 380 ntTSL 3 BASIC16.37■□□□□ 0.21
RNF40O75150 AC234783.1-201ENST00000441761 496 ntBASIC16.37■□□□□ 0.21
RNF40O75150 TMEM191A-209ENST00000452055 788 ntTSL 2 BASIC16.37■□□□□ 0.21
RNF40O75150 AC007389.4-201ENST00000454674 793 ntBASIC16.37■□□□□ 0.21
RNF40O75150 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
RNF40O75150 AC006064.3-201ENST00000537921 477 ntTSL 4 BASIC16.37■□□□□ 0.21
RNF40O75150 TSPAN11-204ENST00000546076 1058 ntAPPRIS P1 TSL 2 BASIC16.37■□□□□ 0.21
RNF40O75150 AC013451.1-201ENST00000554552 518 ntTSL 4 BASIC16.37■□□□□ 0.21
RNF40O75150 AC087612.1-201ENST00000560238 658 ntTSL 5 BASIC16.37■□□□□ 0.21
RNF40O75150 RRP7BP-205ENST00000566851 833 ntBASIC16.37■□□□□ 0.21
RNF40O75150 PAM16-215ENST00000577031 548 ntTSL 4 BASIC16.37■□□□□ 0.21
RNF40O75150 AC010327.1-201ENST00000587871 975 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
RNF40O75150 IFNL3-202ENST00000613087 734 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
RNF40O75150 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
RNF40O75150 REXO1L2P-201ENST00000425429 2069 ntBASIC16.37■□□□□ 0.21
RNF40O75150 TBC1D3G-201ENST00000569055 2065 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
RNF40O75150 TBC1D3H-201ENST00000610350 2065 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
RNF40O75150 TBC1D3L-202ENST00000617678 2065 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
RNF40O75150 SEZ6L-202ENST00000343706 2898 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
RNF40O75150 SLC19A2-201ENST00000236137 3671 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
RNF40O75150 MBD1-201ENST00000269468 3259 ntAPPRIS P3 TSL 5 BASIC16.37■□□□□ 0.21
RNF40O75150 MBLAC2-202ENST00000514906 1936 ntBASIC16.37■□□□□ 0.21
RNF40O75150 CREB3L3-204ENST00000602147 1382 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
RNF40O75150 ITPRIPL2-201ENST00000381440 7247 ntAPPRIS P1 BASIC16.37■□□□□ 0.21
RNF40O75150 RBM47-203ENST00000381795 4473 ntAPPRIS P3 TSL 2 BASIC16.37■□□□□ 0.21
RNF40O75150 NRDC-201ENST00000352171 3691 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
RNF40O75150 EXT1-201ENST00000378204 8270 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
RNF40O75150 SPN-201ENST00000360121 6894 ntAPPRIS P2 TSL 1 (best) BASIC16.36■□□□□ 0.21
RNF40O75150 CCDC32-201ENST00000358005 1704 ntAPPRIS P1 TSL 2 BASIC16.36■□□□□ 0.21
RNF40O75150 AL136982.4-201ENST00000437689 1740 ntBASIC16.36■□□□□ 0.21
RNF40O75150 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
RNF40O75150 DRC3-203ENST00000399187 2008 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
RNF40O75150 CGGBP1-201ENST00000309534 4495 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
RNF40O75150 USP35-204ENST00000530267 2419 ntTSL 2 BASIC16.36■□□□□ 0.21
RNF40O75150 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
RNF40O75150 CYB561D2-202ENST00000418577 1533 ntAPPRIS P1 TSL 2 BASIC16.36■□□□□ 0.21
RNF40O75150 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC16.36■□□□□ 0.21
RNF40O75150 LRRFIP1-203ENST00000308482 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
RNF40O75150 CLCN7-201ENST00000262318 3717 ntTSL 5 BASIC16.36■□□□□ 0.21
RNF40O75150 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC16.36■□□□□ 0.21
RNF40O75150 FBXL4-201ENST00000229971 2810 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
RNF40O75150 EPB41L3-201ENST00000341928 4706 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
RNF40O75150 CYP4F24P-201ENST00000586049 1580 ntBASIC16.36■□□□□ 0.21
RNF40O75150 LINC00475-202ENST00000416438 2506 ntTSL 2 BASIC16.36■□□□□ 0.21
RNF40O75150 S100A16-202ENST00000368704 1146 ntAPPRIS P1 TSL 2 BASIC16.36■□□□□ 0.21
RNF40O75150 TMEM26-AS1-201ENST00000389640 863 ntTSL 5 BASIC16.36■□□□□ 0.21
RNF40O75150 IFITM3-201ENST00000399808 808 ntAPPRIS P2 TSL 1 (best) BASIC16.36■□□□□ 0.21
RNF40O75150 LINC01090-202ENST00000434418 560 ntTSL 5 BASIC16.36■□□□□ 0.21
RNF40O75150 AC114730.3-201ENST00000435195 584 ntTSL 5 BASIC16.36■□□□□ 0.21
RNF40O75150 AL513217.1-202ENST00000458139 600 ntTSL 3 BASIC16.36■□□□□ 0.21
RNF40O75150 PTK7-212ENST00000476760 902 ntTSL 2 BASIC16.36■□□□□ 0.21
RNF40O75150 AC009163.1-201ENST00000530512 573 ntTSL 4 BASIC16.36■□□□□ 0.21
RNF40O75150 AP000943.3-201ENST00000536540 954 ntTSL 3 BASIC16.36■□□□□ 0.21
RNF40O75150 C12orf10-204ENST00000548632 988 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
RNF40O75150 USP3-AS1-204ENST00000559861 620 ntTSL 5 BASIC16.36■□□□□ 0.21
RNF40O75150 ADAM3B-201ENST00000569937 840 ntBASIC16.36■□□□□ 0.21
RNF40O75150 NOP16-209ENST00000618911 1087 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
RNF40O75150 TKT-201ENST00000296289 1931 ntTSL 5 BASIC16.36■□□□□ 0.21
RNF40O75150 RALYL-207ENST00000521695 1924 ntAPPRIS ALT2 TSL 2 BASIC16.36■□□□□ 0.21
RNF40O75150 ALDH4A1-205ENST00000538309 1940 ntTSL 2 BASIC16.36■□□□□ 0.21
RNF40O75150 WDR77-201ENST00000235090 2576 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
RNF40O75150 PTPN9-201ENST00000306726 3862 ntAPPRIS ALT2 TSL 5 BASIC16.36■□□□□ 0.21
RNF40O75150 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC16.36■□□□□ 0.21
RNF40O75150 AC244021.1-201ENST00000417218 3662 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
RNF40O75150 ERC1-219ENST00000546231 4390 ntTSL 5 BASIC16.36■□□□□ 0.21
RNF40O75150 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC16.36■□□□□ 0.21
RNF40O75150 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
RNF40O75150 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC16.36■□□□□ 0.21
RNF40O75150 DESI2-202ENST00000302550 4208 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
RNF40O75150 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
RNF40O75150 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC16.36■□□□□ 0.21
RNF40O75150 CCNY-201ENST00000265375 4768 ntAPPRIS ALT1 TSL 1 (best) BASIC16.35■□□□□ 0.21
RNF40O75150 CLK3P2-201ENST00000427566 1453 ntBASIC16.35■□□□□ 0.21
RNF40O75150 PIDD1-201ENST00000347755 2998 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
RNF40O75150 AC138028.2-202ENST00000567968 4528 ntTSL 2 BASIC16.35■□□□□ 0.21
RNF40O75150 STRN-202ENST00000379213 2254 ntTSL 5 BASIC16.35■□□□□ 0.21
RNF40O75150 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC16.35■□□□□ 0.21
RNF40O75150 LDLR-202ENST00000455727 2333 ntTSL 2 BASIC16.35■□□□□ 0.21
RNF40O75150 SPAAR-202ENST00000443779 1612 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
RNF40O75150 GDF11-201ENST00000257868 8657 ntAPPRIS P2 TSL 1 (best) BASIC16.35■□□□□ 0.21
RNF40O75150 MAGEA8-205ENST00000542674 2084 ntAPPRIS P1 TSL 3 BASIC16.35■□□□□ 0.21
RNF40O75150 UGT3A1-204ENST00000507113 1650 ntTSL 2 BASIC16.35■□□□□ 0.21
RNF40O75150 TM4SF19-201ENST00000273695 1022 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
RNF40O75150 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC16.35■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 56.4 ms