Protein–RNA interactions for Protein: C9J1S8

TRIM49D1, Tripartite motif-containing protein 49D, humanhuman

Predictions only

Length 452 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49D1C9J1S8 RFTN1-203ENST00000432519 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
TRIM49D1C9J1S8 PUDP-202ENST00000412827 1376 ntTSL 2 BASIC15.13■□□□□ 0.01
TRIM49D1C9J1S8 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
TRIM49D1C9J1S8 SPATA33-210ENST00000611218 1546 ntAPPRIS ALT2 TSL 2 BASIC15.13■□□□□ 0.01
TRIM49D1C9J1S8 GAP43-201ENST00000305124 1691 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
TRIM49D1C9J1S8 CSGALNACT1-211ENST00000522854 1990 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
TRIM49D1C9J1S8 CACNA2D4-220ENST00000585732 2566 ntTSL 5 BASIC15.13■□□□□ 0.01
TRIM49D1C9J1S8 CSF1-201ENST00000329608 4210 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
TRIM49D1C9J1S8 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
TRIM49D1C9J1S8 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
TRIM49D1C9J1S8 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC15.13■□□□□ 0.01
TRIM49D1C9J1S8 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC15.13■□□□□ 0.01
TRIM49D1C9J1S8 DUSP18-204ENST00000403268 2920 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
TRIM49D1C9J1S8 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC15.13■□□□□ 0.01
TRIM49D1C9J1S8 UPF3AP3-201ENST00000420996 769 ntBASIC15.13■□□□□ 0.01
TRIM49D1C9J1S8 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC15.13■□□□□ 0.01
TRIM49D1C9J1S8 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC15.13■□□□□ 0.01
TRIM49D1C9J1S8 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC15.13■□□□□ 0.01
TRIM49D1C9J1S8 C8orf88-201ENST00000517562 894 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
TRIM49D1C9J1S8 PLAT-205ENST00000519510 2030 ntTSL 5 BASIC15.13■□□□□ 0.01
TRIM49D1C9J1S8 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC15.13■□□□□ 0.01
TRIM49D1C9J1S8 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC15.13■□□□□ 0.01
TRIM49D1C9J1S8 VPS29-207ENST00000549970 818 ntTSL 3 BASIC15.13■□□□□ 0.01
TRIM49D1C9J1S8 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC15.13■□□□□ 0.01
TRIM49D1C9J1S8 PLA2G15-209ENST00000566188 1203 ntTSL 2 BASIC15.13■□□□□ 0.01
TRIM49D1C9J1S8 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
TRIM49D1C9J1S8 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC15.13■□□□□ 0.01
TRIM49D1C9J1S8 AL359881.3-201ENST00000602640 1721 ntBASIC15.13■□□□□ 0.01
TRIM49D1C9J1S8 AC027612.4-201ENST00000605371 583 ntBASIC15.13■□□□□ 0.01
TRIM49D1C9J1S8 GFY-202ENST00000610896 1557 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
TRIM49D1C9J1S8 MVK-214ENST00000629016 1591 ntTSL 5 BASIC15.13■□□□□ 0.01
TRIM49D1C9J1S8 AC092506.1-204ENST00000634888 1066 ntTSL 5 BASIC15.13■□□□□ 0.01
TRIM49D1C9J1S8 PADI2-202ENST00000375486 4345 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
TRIM49D1C9J1S8 CYP4X1-201ENST00000371901 2357 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
TRIM49D1C9J1S8 EYA4-205ENST00000430974 2364 ntTSL 2 BASIC15.13■□□□□ 0.01
TRIM49D1C9J1S8 C4B-AS1-205ENST00000415626 2095 ntTSL 2 BASIC15.13■□□□□ 0.01
TRIM49D1C9J1S8 C4A-AS1-204ENST00000458633 2095 ntTSL 2 BASIC15.13■□□□□ 0.01
TRIM49D1C9J1S8 RAD17-207ENST00000361732 3002 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
TRIM49D1C9J1S8 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
TRIM49D1C9J1S8 C17orf53-201ENST00000245382 2272 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
TRIM49D1C9J1S8 CALD1-206ENST00000424922 2124 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
TRIM49D1C9J1S8 IKBKB-217ENST00000520810 3086 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
TRIM49D1C9J1S8 RUSC1-204ENST00000368352 3403 ntAPPRIS ALT2 TSL 2 BASIC15.13■□□□□ 0.01
TRIM49D1C9J1S8 RAB5B-202ENST00000448789 1530 ntTSL 2 BASIC15.12■□□□□ 0.01
TRIM49D1C9J1S8 SH3PXD2B-203ENST00000519643 1394 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
TRIM49D1C9J1S8 RERG-209ENST00000546331 1383 ntTSL 2 BASIC15.12■□□□□ 0.01
TRIM49D1C9J1S8 DNASE1L1-206ENST00000393638 2665 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
TRIM49D1C9J1S8 AC005899.8-201ENST00000625127 3153 ntTSL 5 BASIC15.12■□□□□ 0.01
TRIM49D1C9J1S8 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
TRIM49D1C9J1S8 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC15.12■□□□□ 0.01
TRIM49D1C9J1S8 CHPF2-204ENST00000495645 2709 ntTSL 2 BASIC15.12■□□□□ 0.01
TRIM49D1C9J1S8 ATP6V1C2-201ENST00000272238 1565 ntTSL 5 BASIC15.12■□□□□ 0.01
TRIM49D1C9J1S8 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
TRIM49D1C9J1S8 RPARP-AS1-202ENST00000492465 1556 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
TRIM49D1C9J1S8 AGGF1P1-201ENST00000509500 2073 ntBASIC15.12■□□□□ 0.01
TRIM49D1C9J1S8 SPAG9-222ENST00000618113 8246 ntAPPRIS ALT1 TSL 5 BASIC15.12■□□□□ 0.01
TRIM49D1C9J1S8 SETD6-203ENST00000394266 3423 ntTSL 5 BASIC15.12■□□□□ 0.01
TRIM49D1C9J1S8 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
TRIM49D1C9J1S8 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC15.12■□□□□ 0.01
TRIM49D1C9J1S8 MOCS3-201ENST00000244051 5106 ntAPPRIS P1 BASIC15.12■□□□□ 0.01
TRIM49D1C9J1S8 LINC01285-201ENST00000412422 2289 ntTSL 2 BASIC15.12■□□□□ 0.01
TRIM49D1C9J1S8 PRKD1-209ENST00000616995 3498 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
TRIM49D1C9J1S8 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
TRIM49D1C9J1S8 ACSL1-201ENST00000281455 3832 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
TRIM49D1C9J1S8 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
TRIM49D1C9J1S8 HNRNPFP1-201ENST00000391730 1133 ntBASIC15.12■□□□□ 0.01
TRIM49D1C9J1S8 AC254562.1-201ENST00000417586 456 ntBASIC15.12■□□□□ 0.01
TRIM49D1C9J1S8 CNN2P11-201ENST00000429351 262 ntBASIC15.12■□□□□ 0.01
TRIM49D1C9J1S8 AL691459.1-201ENST00000438589 407 ntTSL 3 BASIC15.12■□□□□ 0.01
TRIM49D1C9J1S8 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC15.12■□□□□ 0.01
TRIM49D1C9J1S8 PNOC-204ENST00000522209 1007 ntTSL 2 BASIC15.12■□□□□ 0.01
TRIM49D1C9J1S8 DHDH-204ENST00000523250 634 ntTSL 5 BASIC15.12■□□□□ 0.01
TRIM49D1C9J1S8 AC109322.1-201ENST00000524499 1264 ntBASIC15.12■□□□□ 0.01
TRIM49D1C9J1S8 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC15.12■□□□□ 0.01
TRIM49D1C9J1S8 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC15.12■□□□□ 0.01
TRIM49D1C9J1S8 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
TRIM49D1C9J1S8 TIMM17BP1-201ENST00000545713 516 ntBASIC15.12■□□□□ 0.01
TRIM49D1C9J1S8 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC15.12■□□□□ 0.01
TRIM49D1C9J1S8 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC15.12■□□□□ 0.01
TRIM49D1C9J1S8 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC15.12■□□□□ 0.01
TRIM49D1C9J1S8 SHBG-212ENST00000575314 1146 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
TRIM49D1C9J1S8 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
TRIM49D1C9J1S8 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC15.12■□□□□ 0.01
TRIM49D1C9J1S8 PAK6-202ENST00000455577 4215 ntTSL 2 BASIC15.12■□□□□ 0.01
TRIM49D1C9J1S8 LAT2-205ENST00000460943 2527 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
TRIM49D1C9J1S8 ENDOV-206ENST00000518901 2549 ntTSL 2 BASIC15.12■□□□□ 0.01
TRIM49D1C9J1S8 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
TRIM49D1C9J1S8 PTPRU-204ENST00000428026 5550 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
TRIM49D1C9J1S8 ABR-205ENST00000544583 5595 ntTSL 2 BASIC15.12■□□□□ 0.01
TRIM49D1C9J1S8 SGK2-204ENST00000373100 2225 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
TRIM49D1C9J1S8 THBS2-206ENST00000617924 5280 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
TRIM49D1C9J1S8 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC15.12■□□□□ 0.01
TRIM49D1C9J1S8 SIGLECL1-208ENST00000614422 1516 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
TRIM49D1C9J1S8 ZW10-201ENST00000200135 2992 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
TRIM49D1C9J1S8 MBD4-204ENST00000503197 2099 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
TRIM49D1C9J1S8 TIGD1-201ENST00000408957 2625 ntAPPRIS P1 BASIC15.12■□□□□ 0.01
TRIM49D1C9J1S8 TPGS2-202ENST00000383056 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
TRIM49D1C9J1S8 FBRS-201ENST00000287468 2811 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
TRIM49D1C9J1S8 GLB1L2-205ENST00000535456 3365 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
TRIM49D1C9J1S8 ARHGEF7-201ENST00000218789 5233 ntTSL 5 BASIC15.11■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 85.8 ms