Protein–RNA interactions for Protein: Q9Y3P4

RHBDD3, Rhomboid domain-containing protein 3, humanhuman

Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RHBDD3Q9Y3P4 FCHSD2-204ENST00000409418 3154 ntAPPRIS P1 TSL 2 BASIC13.26□□□□□ -0.29
RHBDD3Q9Y3P4 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC13.26□□□□□ -0.29
RHBDD3Q9Y3P4 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
RHBDD3Q9Y3P4 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC13.26□□□□□ -0.29
RHBDD3Q9Y3P4 HTR3A-205ENST00000504030 2432 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
RHBDD3Q9Y3P4 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC13.26□□□□□ -0.29
RHBDD3Q9Y3P4 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC13.26□□□□□ -0.29
RHBDD3Q9Y3P4 OPCML-IT1-201ENST00000533859 2936 ntTSL 2 BASIC13.26□□□□□ -0.29
RHBDD3Q9Y3P4 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
RHBDD3Q9Y3P4 SRSF5-203ENST00000553521 2815 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
RHBDD3Q9Y3P4 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
RHBDD3Q9Y3P4 AC104794.3-201ENST00000566840 1248 ntBASIC13.26□□□□□ -0.29
RHBDD3Q9Y3P4 SHBG-212ENST00000575314 1146 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
RHBDD3Q9Y3P4 GPX4-206ENST00000588919 803 ntTSL 2 BASIC13.26□□□□□ -0.29
RHBDD3Q9Y3P4 POLR2E-213ENST00000615234 2831 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
RHBDD3Q9Y3P4 PLIN4-201ENST00000301286 6353 ntAPPRIS P2 TSL 5 BASIC13.26□□□□□ -0.29
RHBDD3Q9Y3P4 DTX3L-201ENST00000296161 5868 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
RHBDD3Q9Y3P4 ATP2C1-214ENST00000508532 4969 ntAPPRIS ALT1 TSL 1 (best) BASIC13.26□□□□□ -0.29
RHBDD3Q9Y3P4 KIAA1211L-201ENST00000397899 3907 ntAPPRIS P2 TSL 1 (best) BASIC13.26□□□□□ -0.29
RHBDD3Q9Y3P4 AC004706.4-201ENST00000634965 3537 ntAPPRIS P1 BASIC13.26□□□□□ -0.29
RHBDD3Q9Y3P4 COL22A1-201ENST00000303045 6346 ntAPPRIS P2 TSL 1 (best) BASIC13.26□□□□□ -0.29
RHBDD3Q9Y3P4 WARS2-202ENST00000369426 2811 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
RHBDD3Q9Y3P4 CYP1A1-210ENST00000617691 2521 ntTSL 5 BASIC13.26□□□□□ -0.29
RHBDD3Q9Y3P4 DNAJA1-201ENST00000330899 2381 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
RHBDD3Q9Y3P4 HTR3A-206ENST00000506841 2221 ntTSL 2 BASIC13.25□□□□□ -0.29
RHBDD3Q9Y3P4 GCC1-201ENST00000321407 4149 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
RHBDD3Q9Y3P4 UBXN11-204ENST00000374217 1846 ntAPPRIS ALT2 TSL 2 BASIC13.25□□□□□ -0.29
RHBDD3Q9Y3P4 AP4M1-205ENST00000422582 1814 ntTSL 2 BASIC13.25□□□□□ -0.29
RHBDD3Q9Y3P4 CACTIN-203ENST00000429344 3612 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
RHBDD3Q9Y3P4 PTPRO-201ENST00000281171 5301 ntAPPRIS P3 TSL 1 (best) BASIC13.25□□□□□ -0.29
RHBDD3Q9Y3P4 FLNA-207ENST00000422373 8486 ntAPPRIS P3 TSL 5 BASIC13.25□□□□□ -0.29
RHBDD3Q9Y3P4 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
RHBDD3Q9Y3P4 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
RHBDD3Q9Y3P4 CLK3P2-201ENST00000427566 1453 ntBASIC13.25□□□□□ -0.29
RHBDD3Q9Y3P4 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC13.25□□□□□ -0.29
RHBDD3Q9Y3P4 GAS2L2-203ENST00000618498 2655 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
RHBDD3Q9Y3P4 IQCA1L-203ENST00000615129 2606 ntAPPRIS P1 TSL 5 BASIC13.25□□□□□ -0.29
RHBDD3Q9Y3P4 TRIM67-201ENST00000366653 3936 ntAPPRIS P2 TSL 1 (best) BASIC13.25□□□□□ -0.29
RHBDD3Q9Y3P4 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
RHBDD3Q9Y3P4 FTH1-201ENST00000273550 1229 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
RHBDD3Q9Y3P4 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
RHBDD3Q9Y3P4 MRPS18AP1-201ENST00000414458 589 ntBASIC13.25□□□□□ -0.29
RHBDD3Q9Y3P4 AL161638.1-201ENST00000420354 481 ntTSL 3 BASIC13.25□□□□□ -0.29
RHBDD3Q9Y3P4 PLXNB2-207ENST00000449103 6383 ntAPPRIS P1 TSL 5 BASIC13.25□□□□□ -0.29
RHBDD3Q9Y3P4 FTH1-202ENST00000526640 786 ntTSL 2 BASIC13.25□□□□□ -0.29
RHBDD3Q9Y3P4 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
RHBDD3Q9Y3P4 ARL16-202ENST00000570561 768 ntTSL 2 BASIC13.25□□□□□ -0.29
RHBDD3Q9Y3P4 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
RHBDD3Q9Y3P4 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC13.25□□□□□ -0.29
RHBDD3Q9Y3P4 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC13.25□□□□□ -0.29
RHBDD3Q9Y3P4 GPR39-203ENST00000622084 900 ntTSL 5 BASIC13.25□□□□□ -0.29
RHBDD3Q9Y3P4 LINC01002-214ENST00000632102 561 ntTSL 4 BASIC13.25□□□□□ -0.29
RHBDD3Q9Y3P4 NDOR1-202ENST00000371521 2497 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
RHBDD3Q9Y3P4 BANP-203ENST00000393207 2438 ntTSL 2 BASIC13.25□□□□□ -0.29
RHBDD3Q9Y3P4 ITGAM-202ENST00000544665 4718 ntAPPRIS ALT1 TSL 1 (best) BASIC13.25□□□□□ -0.29
RHBDD3Q9Y3P4 SLC7A4-202ENST00000403586 2307 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
RHBDD3Q9Y3P4 SF1-209ENST00000433274 2317 ntTSL 2 BASIC13.25□□□□□ -0.29
RHBDD3Q9Y3P4 SLC35C2-204ENST00000372230 2246 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
RHBDD3Q9Y3P4 CCT3-201ENST00000295688 2150 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
RHBDD3Q9Y3P4 RAPGEF4-201ENST00000397081 4299 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
RHBDD3Q9Y3P4 C4B-201ENST00000425700 5237 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
RHBDD3Q9Y3P4 RBM26-203ENST00000438737 4132 ntTSL 5 BASIC13.25□□□□□ -0.29
RHBDD3Q9Y3P4 GALNTL6-205ENST00000511251 2905 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
RHBDD3Q9Y3P4 KDR-201ENST00000263923 5831 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
RHBDD3Q9Y3P4 RUNX3-201ENST00000308873 3861 ntAPPRIS P3 TSL 1 (best) BASIC13.25□□□□□ -0.29
RHBDD3Q9Y3P4 TLX1NB-202ENST00000445873 1862 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
RHBDD3Q9Y3P4 PLEKHO2-201ENST00000323544 3720 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
RHBDD3Q9Y3P4 GLIPR1L2-204ENST00000550916 2609 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
RHBDD3Q9Y3P4 C1orf43-206ENST00000368521 1708 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
RHBDD3Q9Y3P4 RAB43-202ENST00000393304 4230 ntAPPRIS P1 TSL 4 BASIC13.24□□□□□ -0.29
RHBDD3Q9Y3P4 KCNN2-201ENST00000264773 2512 ntAPPRIS P2 TSL 1 (best) BASIC13.24□□□□□ -0.29
RHBDD3Q9Y3P4 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
RHBDD3Q9Y3P4 AC027601.5-201ENST00000624065 2482 ntBASIC13.24□□□□□ -0.29
RHBDD3Q9Y3P4 AC117489.1-201ENST00000625169 3217 ntBASIC13.24□□□□□ -0.29
RHBDD3Q9Y3P4 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
RHBDD3Q9Y3P4 AC104452.1-203ENST00000636166 2266 ntAPPRIS P1 TSL 5 BASIC13.24□□□□□ -0.29
RHBDD3Q9Y3P4 ZBTB45P1-201ENST00000452761 1456 ntBASIC13.24□□□□□ -0.29
RHBDD3Q9Y3P4 AC012508.2-201ENST00000567613 1472 ntBASIC13.24□□□□□ -0.29
RHBDD3Q9Y3P4 SBF1-202ENST00000380817 8008 ntAPPRIS P2 TSL 1 (best) BASIC13.24□□□□□ -0.29
RHBDD3Q9Y3P4 ZPBP2-202ENST00000377940 2177 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
RHBDD3Q9Y3P4 CRYBG1-204ENST00000633556 9909 ntAPPRIS ALT2 TSL 5 BASIC13.24□□□□□ -0.29
RHBDD3Q9Y3P4 PWWP2A-201ENST00000307063 3346 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
RHBDD3Q9Y3P4 MAPT-215ENST00000574436 1326 ntAPPRIS ALT2 TSL 5 BASIC13.24□□□□□ -0.29
RHBDD3Q9Y3P4 AL591623.1-201ENST00000417786 1960 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
RHBDD3Q9Y3P4 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
RHBDD3Q9Y3P4 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
RHBDD3Q9Y3P4 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
RHBDD3Q9Y3P4 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
RHBDD3Q9Y3P4 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC13.24□□□□□ -0.29
RHBDD3Q9Y3P4 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC13.24□□□□□ -0.29
RHBDD3Q9Y3P4 AL691459.1-201ENST00000438589 407 ntTSL 3 BASIC13.24□□□□□ -0.29
RHBDD3Q9Y3P4 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC13.24□□□□□ -0.29
RHBDD3Q9Y3P4 BMP7-AS1-201ENST00000445956 436 ntTSL 2 BASIC13.24□□□□□ -0.29
RHBDD3Q9Y3P4 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC13.24□□□□□ -0.29
RHBDD3Q9Y3P4 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC13.24□□□□□ -0.29
RHBDD3Q9Y3P4 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC13.24□□□□□ -0.29
RHBDD3Q9Y3P4 AL391069.4-201ENST00000609583 481 ntBASIC13.24□□□□□ -0.29
RHBDD3Q9Y3P4 RNA5-8SN1-201ENST00000610460 153 ntBASIC13.24□□□□□ -0.29
RHBDD3Q9Y3P4 RNA5-8SN5-202ENST00000612463 153 ntBASIC13.24□□□□□ -0.29
RHBDD3Q9Y3P4 RNA5-8SN4-201ENST00000613359 153 ntBASIC13.24□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 65.7 ms