Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 AC091951.1-201ENST00000512854 2465 ntBASIC28.22■■■□□ 2.11
SHROOM4Q9ULL8 ETV2-201ENST00000379023 926 ntAPPRIS ALT2 TSL 1 (best) BASIC28.22■■■□□ 2.11
SHROOM4Q9ULL8 AL132639.2-202ENST00000553520 467 ntTSL 2 BASIC28.22■■■□□ 2.11
SHROOM4Q9ULL8 DCTPP1-202ENST00000565758 749 ntTSL 3 BASIC28.22■■■□□ 2.11
SHROOM4Q9ULL8 AC093525.1-201ENST00000569317 596 ntAPPRIS P1 TSL 3 BASIC28.22■■■□□ 2.11
SHROOM4Q9ULL8 ZSCAN10-205ENST00000572548 618 ntTSL 3 BASIC28.22■■■□□ 2.11
SHROOM4Q9ULL8 LINC00621-201ENST00000577004 1177 ntTSL 4 BASIC28.22■■■□□ 2.11
SHROOM4Q9ULL8 AC093330.1-206ENST00000582546 812 ntTSL 3 BASIC28.22■■■□□ 2.11
SHROOM4Q9ULL8 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC28.22■■■□□ 2.11
SHROOM4Q9ULL8 RAB5B-202ENST00000448789 1530 ntTSL 2 BASIC28.22■■■□□ 2.11
SHROOM4Q9ULL8 HSD17B6-206ENST00000555159 1525 ntAPPRIS P1 TSL 5 BASIC28.22■■■□□ 2.11
SHROOM4Q9ULL8 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC28.22■■■□□ 2.11
SHROOM4Q9ULL8 LINC00900-201ENST00000499809 3322 ntTSL 2 BASIC28.22■■■□□ 2.11
SHROOM4Q9ULL8 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
SHROOM4Q9ULL8 IL1RN-203ENST00000361779 1922 ntTSL 1 (best) BASIC28.22■■■□□ 2.11
SHROOM4Q9ULL8 PTGES3L-AARSD1-204ENST00000421990 2150 ntAPPRIS P1 TSL 2 BASIC28.22■■■□□ 2.11
SHROOM4Q9ULL8 KCNJ18-201ENST00000567955 2196 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
SHROOM4Q9ULL8 RTP1-201ENST00000312295 2217 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
SHROOM4Q9ULL8 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC28.22■■■□□ 2.11
SHROOM4Q9ULL8 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
SHROOM4Q9ULL8 TNFSF11-201ENST00000239849 911 ntTSL 5 BASIC28.21■■■□□ 2.11
SHROOM4Q9ULL8 ATP6V0D1-201ENST00000290949 1716 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
SHROOM4Q9ULL8 AL953897.1-201ENST00000376620 1868 ntTSL 1 (best) BASIC28.21■■■□□ 2.11
SHROOM4Q9ULL8 TPGS2-202ENST00000383056 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC28.21■■■□□ 2.11
SHROOM4Q9ULL8 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
SHROOM4Q9ULL8 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC28.21■■■□□ 2.11
SHROOM4Q9ULL8 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC28.21■■■□□ 2.11
SHROOM4Q9ULL8 LINC00313-205ENST00000427188 967 ntTSL 1 (best) BASIC28.21■■■□□ 2.11
SHROOM4Q9ULL8 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC28.21■■■□□ 2.11
SHROOM4Q9ULL8 POU5F1P2-201ENST00000521750 823 ntBASIC28.21■■■□□ 2.11
SHROOM4Q9ULL8 AC024361.2-201ENST00000574471 898 ntTSL 1 (best) BASIC28.21■■■□□ 2.11
SHROOM4Q9ULL8 BX537318.1-201ENST00000608290 1207 ntTSL 5 BASIC28.21■■■□□ 2.11
SHROOM4Q9ULL8 AP001527.2-201ENST00000614441 631 ntBASIC28.21■■■□□ 2.11
SHROOM4Q9ULL8 ATP6AP2-213ENST00000636251 1877 ntAPPRIS ALT2 TSL 5 BASIC28.21■■■□□ 2.11
SHROOM4Q9ULL8 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
SHROOM4Q9ULL8 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC28.21■■■□□ 2.11
SHROOM4Q9ULL8 MAD1L1-203ENST00000402746 2355 ntTSL 2 BASIC28.21■■■□□ 2.11
SHROOM4Q9ULL8 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC28.21■■■□□ 2.11
SHROOM4Q9ULL8 MSTO1-202ENST00000368341 2245 ntTSL 2 BASIC28.21■■■□□ 2.11
SHROOM4Q9ULL8 IVL-201ENST00000368764 2153 ntAPPRIS P1 TSL 2 BASIC28.21■■■□□ 2.11
SHROOM4Q9ULL8 TMEM51-204ENST00000428417 1942 ntAPPRIS P1 TSL 3 BASIC28.21■■■□□ 2.11
SHROOM4Q9ULL8 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
SHROOM4Q9ULL8 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC28.21■■■□□ 2.11
SHROOM4Q9ULL8 UGT3A1-204ENST00000507113 1650 ntTSL 2 BASIC28.21■■■□□ 2.11
SHROOM4Q9ULL8 FAM45A-201ENST00000361432 1648 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
SHROOM4Q9ULL8 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC28.21■■■□□ 2.11
SHROOM4Q9ULL8 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
SHROOM4Q9ULL8 TMEM242-201ENST00000367144 1030 ntTSL 2 BASIC28.21■■■□□ 2.11
SHROOM4Q9ULL8 AL627231.1-201ENST00000394467 1125 ntBASIC28.21■■■□□ 2.11
SHROOM4Q9ULL8 SERPINE3-201ENST00000400389 1218 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
SHROOM4Q9ULL8 KLF2P1-201ENST00000447438 1042 ntBASIC28.21■■■□□ 2.11
SHROOM4Q9ULL8 ZAP70-202ENST00000451498 1085 ntTSL 1 (best) BASIC28.21■■■□□ 2.11
SHROOM4Q9ULL8 RPS15-202ENST00000585665 467 ntTSL 3 BASIC28.21■■■□□ 2.11
SHROOM4Q9ULL8 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC28.21■■■□□ 2.11
SHROOM4Q9ULL8 AC013726.1-201ENST00000563747 2285 ntBASIC28.2■■■□□ 2.11
SHROOM4Q9ULL8 UPB1-202ENST00000382760 1928 ntTSL 5 BASIC28.2■■■□□ 2.11
SHROOM4Q9ULL8 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC28.2■■■□□ 2.11
SHROOM4Q9ULL8 PCOLCE-201ENST00000223061 1702 ntAPPRIS P1 TSL 1 (best) BASIC28.2■■■□□ 2.11
SHROOM4Q9ULL8 SMTNL1-202ENST00000527972 1649 ntAPPRIS P2 TSL 5 BASIC28.2■■■□□ 2.11
SHROOM4Q9ULL8 SLAIN1-216ENST00000488699 1461 ntTSL 2 BASIC28.2■■■□□ 2.1
SHROOM4Q9ULL8 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC28.2■■■□□ 2.1
SHROOM4Q9ULL8 TARBP2-203ENST00000456234 1368 ntTSL 1 (best) BASIC28.2■■■□□ 2.1
SHROOM4Q9ULL8 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC28.2■■■□□ 2.1
SHROOM4Q9ULL8 LINC01868-201ENST00000414965 562 ntTSL 4 BASIC28.2■■■□□ 2.1
SHROOM4Q9ULL8 MAX-211ENST00000555667 574 ntTSL 1 (best) BASIC28.2■■■□□ 2.1
SHROOM4Q9ULL8 IMPA2-207ENST00000588927 787 ntTSL 5 BASIC28.2■■■□□ 2.1
SHROOM4Q9ULL8 UXT-AS1-202ENST00000591832 565 ntTSL 4 BASIC28.2■■■□□ 2.1
SHROOM4Q9ULL8 CNDP1-201ENST00000358821 2215 ntAPPRIS P2 TSL 1 (best) BASIC28.19■■■□□ 2.1
SHROOM4Q9ULL8 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC28.19■■■□□ 2.1
SHROOM4Q9ULL8 RABL2A-206ENST00000409842 1979 ntTSL 1 (best) BASIC28.19■■■□□ 2.1
SHROOM4Q9ULL8 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC28.19■■■□□ 2.1
SHROOM4Q9ULL8 ACTL7B-201ENST00000374667 2379 ntAPPRIS P1 BASIC28.19■■■□□ 2.1
SHROOM4Q9ULL8 GLB1L2-201ENST00000339772 3152 ntAPPRIS P1 TSL 5 BASIC28.19■■■□□ 2.1
SHROOM4Q9ULL8 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC28.19■■■□□ 2.1
SHROOM4Q9ULL8 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC28.19■■■□□ 2.1
SHROOM4Q9ULL8 NSUN5P1-203ENST00000422386 972 ntTSL 1 (best) BASIC28.19■■■□□ 2.1
SHROOM4Q9ULL8 BCAS2P2-201ENST00000425064 674 ntBASIC28.19■■■□□ 2.1
SHROOM4Q9ULL8 CUTA-215ENST00000611509 1199 ntAPPRIS P3 TSL 1 (best) BASIC28.19■■■□□ 2.1
SHROOM4Q9ULL8 AL157813.1-201ENST00000612996 587 ntBASIC28.19■■■□□ 2.1
SHROOM4Q9ULL8 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC28.19■■■□□ 2.1
SHROOM4Q9ULL8 LETMD1-206ENST00000547008 1665 ntTSL 2 BASIC28.19■■■□□ 2.1
SHROOM4Q9ULL8 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC28.19■■■□□ 2.1
SHROOM4Q9ULL8 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC28.19■■■□□ 2.1
SHROOM4Q9ULL8 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC28.19■■■□□ 2.1
SHROOM4Q9ULL8 ZNF7-202ENST00000446747 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC28.18■■■□□ 2.1
SHROOM4Q9ULL8 KRT8P21-201ENST00000430398 1491 ntBASIC28.18■■■□□ 2.1
SHROOM4Q9ULL8 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC28.18■■■□□ 2.1
SHROOM4Q9ULL8 EPN2-201ENST00000314728 4871 ntAPPRIS P4 TSL 1 (best) BASIC28.18■■■□□ 2.1
SHROOM4Q9ULL8 STX1A-201ENST00000222812 2095 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
SHROOM4Q9ULL8 STX1A-204ENST00000395156 2050 ntTSL 1 (best) BASIC28.18■■■□□ 2.1
SHROOM4Q9ULL8 CRY2-201ENST00000417225 2053 ntTSL 2 BASIC28.18■■■□□ 2.1
SHROOM4Q9ULL8 FHL2-206ENST00000408995 1367 ntAPPRIS P1 TSL 2 BASIC28.18■■■□□ 2.1
SHROOM4Q9ULL8 CKM-201ENST00000221476 1657 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
SHROOM4Q9ULL8 AL138725.1-201ENST00000407347 1314 ntBASIC28.18■■■□□ 2.1
SHROOM4Q9ULL8 KRT71-201ENST00000267119 2265 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
SHROOM4Q9ULL8 CMTM5-201ENST00000339180 1173 ntTSL 1 (best) BASIC28.18■■■□□ 2.1
SHROOM4Q9ULL8 LYPLA2P1-203ENST00000447689 696 ntBASIC28.18■■■□□ 2.1
SHROOM4Q9ULL8 AC018463.1-201ENST00000456674 917 ntBASIC28.18■■■□□ 2.1
SHROOM4Q9ULL8 MSRB3-206ENST00000535664 964 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
SHROOM4Q9ULL8 CD63-214ENST00000552692 949 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
Retrieved 100 of 98,524 protein–RNA pairs in 55.3 ms