Protein–RNA interactions for Protein: Q9NWW5

CLN6, Ceroid-lipofuscinosis neuronal protein 6, humanhuman

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6Q9NWW5 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CLN6Q9NWW5 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC13.82□□□□□ -0.2
CLN6Q9NWW5 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC13.82□□□□□ -0.2
CLN6Q9NWW5 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC13.82□□□□□ -0.2
CLN6Q9NWW5 RBM39-205ENST00000397370 612 ntTSL 2 BASIC13.82□□□□□ -0.2
CLN6Q9NWW5 SPDYE17-201ENST00000412399 783 ntBASIC13.82□□□□□ -0.2
CLN6Q9NWW5 MNX1-AS2-201ENST00000429228 374 ntTSL 3 BASIC13.82□□□□□ -0.2
CLN6Q9NWW5 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC13.82□□□□□ -0.2
CLN6Q9NWW5 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC13.82□□□□□ -0.2
CLN6Q9NWW5 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CLN6Q9NWW5 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC13.82□□□□□ -0.2
CLN6Q9NWW5 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC13.82□□□□□ -0.2
CLN6Q9NWW5 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC13.82□□□□□ -0.2
CLN6Q9NWW5 AC105021.1-202ENST00000570572 669 ntBASIC13.82□□□□□ -0.2
CLN6Q9NWW5 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC13.82□□□□□ -0.2
CLN6Q9NWW5 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC13.82□□□□□ -0.2
CLN6Q9NWW5 INTS1-201ENST00000404767 6959 ntAPPRIS P1 TSL 5 BASIC13.82□□□□□ -0.2
CLN6Q9NWW5 FEM1A-201ENST00000269856 9593 ntAPPRIS P1 BASIC13.82□□□□□ -0.2
CLN6Q9NWW5 PPIP5K1-209ENST00000420765 5718 ntAPPRIS ALT2 TSL 5 BASIC13.82□□□□□ -0.2
CLN6Q9NWW5 SRPX-206ENST00000544439 1842 ntAPPRIS ALT2 TSL 2 BASIC13.82□□□□□ -0.2
CLN6Q9NWW5 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
CLN6Q9NWW5 PRKD1-209ENST00000616995 3498 ntAPPRIS ALT2 TSL 5 BASIC13.82□□□□□ -0.2
CLN6Q9NWW5 MSI2-202ENST00000322684 1860 ntAPPRIS ALT2 TSL 2 BASIC13.82□□□□□ -0.2
CLN6Q9NWW5 CASC2-202ENST00000426021 3232 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
CLN6Q9NWW5 COL4A1-201ENST00000375820 6532 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CLN6Q9NWW5 GCLC-201ENST00000229416 3813 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CLN6Q9NWW5 KCNC2-202ENST00000350228 3344 ntAPPRIS ALT2 TSL 2 BASIC13.82□□□□□ -0.2
CLN6Q9NWW5 OAS3-201ENST00000228928 6719 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CLN6Q9NWW5 GRM5-AS1-201ENST00000526448 4821 ntTSL 5 BASIC13.81□□□□□ -0.2
CLN6Q9NWW5 TRIO-202ENST00000344204 11100 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CLN6Q9NWW5 IFNAR2-202ENST00000342136 2899 ntAPPRIS P4 TSL 1 (best) BASIC13.81□□□□□ -0.2
CLN6Q9NWW5 SLC37A4-216ENST00000538950 2032 ntTSL 5 BASIC13.81□□□□□ -0.2
CLN6Q9NWW5 PIK3R5-219ENST00000616147 4377 ntTSL 5 BASIC13.81□□□□□ -0.2
CLN6Q9NWW5 ITGB8-201ENST00000222573 8751 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CLN6Q9NWW5 PBXIP1-202ENST00000368463 3212 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
CLN6Q9NWW5 SMTN-223ENST00000619644 3227 ntTSL 2 BASIC13.81□□□□□ -0.2
CLN6Q9NWW5 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
CLN6Q9NWW5 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CLN6Q9NWW5 RIC1-204ENST00000418622 6658 ntTSL 5 BASIC13.81□□□□□ -0.2
CLN6Q9NWW5 A1BG-AS1-204ENST00000595302 2130 ntTSL 2 BASIC13.81□□□□□ -0.2
CLN6Q9NWW5 MAGEA9-201ENST00000243314 1814 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CLN6Q9NWW5 PIK3R3-203ENST00000420542 5174 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CLN6Q9NWW5 SLC22A6-204ENST00000458333 1521 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
CLN6Q9NWW5 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC13.81□□□□□ -0.2
CLN6Q9NWW5 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC13.81□□□□□ -0.2
CLN6Q9NWW5 TMEM2-202ENST00000377044 6523 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
CLN6Q9NWW5 AC107918.4-201ENST00000641966 3141 ntBASIC13.81□□□□□ -0.2
CLN6Q9NWW5 PRNP-203ENST00000430350 2539 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CLN6Q9NWW5 PIGT-202ENST00000279036 2245 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CLN6Q9NWW5 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
CLN6Q9NWW5 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC13.81□□□□□ -0.2
CLN6Q9NWW5 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC13.81□□□□□ -0.2
CLN6Q9NWW5 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
CLN6Q9NWW5 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC13.81□□□□□ -0.2
CLN6Q9NWW5 PTK7-212ENST00000476760 902 ntTSL 2 BASIC13.81□□□□□ -0.2
CLN6Q9NWW5 AC067930.5-201ENST00000531730 1173 ntTSL 2 BASIC13.81□□□□□ -0.2
CLN6Q9NWW5 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC13.81□□□□□ -0.2
CLN6Q9NWW5 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC13.81□□□□□ -0.2
CLN6Q9NWW5 AC040169.1-201ENST00000565382 521 ntBASIC13.81□□□□□ -0.2
CLN6Q9NWW5 AC009065.5-201ENST00000565937 596 ntTSL 3 BASIC13.81□□□□□ -0.2
CLN6Q9NWW5 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
CLN6Q9NWW5 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC13.81□□□□□ -0.2
CLN6Q9NWW5 AC120114.3-201ENST00000611923 658 ntBASIC13.81□□□□□ -0.2
CLN6Q9NWW5 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC13.81□□□□□ -0.2
CLN6Q9NWW5 C20orf181-201ENST00000623918 480 ntBASIC13.81□□□□□ -0.2
CLN6Q9NWW5 AL731571.1-201ENST00000617058 5428 ntBASIC13.81□□□□□ -0.2
CLN6Q9NWW5 NDNF-201ENST00000379692 2885 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CLN6Q9NWW5 CCDC186-202ENST00000369286 1928 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
CLN6Q9NWW5 MED22-209ENST00000610888 3867 ntAPPRIS ALT1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CLN6Q9NWW5 CSF1-201ENST00000329608 4210 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CLN6Q9NWW5 MAD1L1-204ENST00000406869 2991 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CLN6Q9NWW5 PEX5-207ENST00000455147 2689 ntAPPRIS P1 TSL 2 BASIC13.81□□□□□ -0.2
CLN6Q9NWW5 GPR37-201ENST00000303921 3021 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CLN6Q9NWW5 ASAH1-258ENST00000637790 3042 ntAPPRIS P2 TSL 1 (best) BASIC13.81□□□□□ -0.2
CLN6Q9NWW5 RPUSD2-201ENST00000315616 2358 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
CLN6Q9NWW5 MEGF8-201ENST00000251268 9549 ntAPPRIS ALT2 TSL 5 BASIC13.81□□□□□ -0.2
CLN6Q9NWW5 GUF1-201ENST00000281543 4449 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CLN6Q9NWW5 RUSC1-204ENST00000368352 3403 ntAPPRIS ALT2 TSL 2 BASIC13.81□□□□□ -0.2
CLN6Q9NWW5 CABLES2-201ENST00000279101 3785 ntAPPRIS P2 TSL 5 BASIC13.81□□□□□ -0.2
CLN6Q9NWW5 AC018665.1-201ENST00000622927 1362 ntBASIC13.81□□□□□ -0.2
CLN6Q9NWW5 NRXN1-207ENST00000404971 7578 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
CLN6Q9NWW5 EPAS1-201ENST00000263734 5166 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CLN6Q9NWW5 HBP1-201ENST00000222574 2829 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CLN6Q9NWW5 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CLN6Q9NWW5 CYP1B1-AS1-201ENST00000413828 1781 ntTSL 5 BASIC13.81□□□□□ -0.2
CLN6Q9NWW5 MSRB3-202ENST00000355192 4289 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
CLN6Q9NWW5 KRT8P22-201ENST00000562317 1415 ntBASIC13.81□□□□□ -0.2
CLN6Q9NWW5 FAAP100-201ENST00000327787 3627 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CLN6Q9NWW5 AGPAT3-218ENST00000546158 2199 ntAPPRIS P1 TSL 5 BASIC13.81□□□□□ -0.2
CLN6Q9NWW5 PDXK-210ENST00000468090 7297 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
CLN6Q9NWW5 ITGB2-203ENST00000355153 2913 ntAPPRIS P1 TSL 2 BASIC13.8□□□□□ -0.2
CLN6Q9NWW5 DUSP18-204ENST00000403268 2920 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
CLN6Q9NWW5 KCNH6-202ENST00000456941 2928 ntTSL 5 BASIC13.8□□□□□ -0.2
CLN6Q9NWW5 CREB3L4-202ENST00000368600 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
CLN6Q9NWW5 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
CLN6Q9NWW5 P2RX5-207ENST00000551178 1863 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
CLN6Q9NWW5 NCOR2-202ENST00000404121 7175 ntTSL 5 BASIC13.8□□□□□ -0.2
CLN6Q9NWW5 RAD17-207ENST00000361732 3002 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
CLN6Q9NWW5 TRIM65-201ENST00000269383 3439 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
CLN6Q9NWW5 MAP2K1-201ENST00000307102 3410 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 33.6 ms