Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 AC008750.3-201ENST00000601148 437 ntTSL 5 BASIC17.63■□□□□ 0.41
NUP88Q99567 FDPS-221ENST00000612683 1198 ntAPPRIS ALT1 TSL 5 BASIC17.63■□□□□ 0.41
NUP88Q99567 SEC63-201ENST00000369002 6411 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
NUP88Q99567 KHDRBS1-202ENST00000327300 2757 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
NUP88Q99567 RGS6-218ENST00000556437 1689 ntAPPRIS ALT1 TSL 1 (best) BASIC17.63■□□□□ 0.41
NUP88Q99567 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC17.63■□□□□ 0.41
NUP88Q99567 NR2E3-203ENST00000621098 2064 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
NUP88Q99567 CLUHP2-201ENST00000426660 1303 ntBASIC17.63■□□□□ 0.41
NUP88Q99567 MARVELD1-201ENST00000285605 3221 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
NUP88Q99567 COPS7B-224ENST00000620578 2500 ntTSL 2 BASIC17.63■□□□□ 0.41
NUP88Q99567 C18orf15-201ENST00000623680 2534 ntBASIC17.63■□□□□ 0.41
NUP88Q99567 AC006486.2-201ENST00000624246 2199 ntBASIC17.63■□□□□ 0.41
NUP88Q99567 NR3C1-209ENST00000503201 2594 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
NUP88Q99567 IBA57-201ENST00000366711 7817 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
NUP88Q99567 CENPT-202ENST00000440851 2200 ntAPPRIS P2 TSL 5 BASIC17.63■□□□□ 0.41
NUP88Q99567 DGKI-201ENST00000288490 3895 ntAPPRIS P3 TSL 5 BASIC17.63■□□□□ 0.41
NUP88Q99567 UHRF2-201ENST00000276893 3452 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
NUP88Q99567 AC007728.2-201ENST00000563315 2296 ntTSL 5 BASIC17.63■□□□□ 0.41
NUP88Q99567 CAPN2-201ENST00000295006 3573 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
NUP88Q99567 KRT8P4-201ENST00000509735 1454 ntBASIC17.63■□□□□ 0.41
NUP88Q99567 INPP5D-201ENST00000359570 5274 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
NUP88Q99567 NPY5R-203ENST00000515560 3183 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
NUP88Q99567 AC018735.1-201ENST00000437208 1502 ntBASIC17.62■□□□□ 0.41
NUP88Q99567 AC015818.8-201ENST00000587907 1519 ntBASIC17.62■□□□□ 0.41
NUP88Q99567 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC17.62■□□□□ 0.41
NUP88Q99567 CCAR2-201ENST00000308511 4853 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
NUP88Q99567 MINK1-201ENST00000347992 4863 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
NUP88Q99567 AC010931.2-202ENST00000514871 2566 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
NUP88Q99567 COL11A2-201ENST00000341947 6425 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
NUP88Q99567 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
NUP88Q99567 AC087164.1-202ENST00000583062 2158 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
NUP88Q99567 LMF2-201ENST00000216080 2658 ntTSL 2 BASIC17.62■□□□□ 0.41
NUP88Q99567 SYN1-201ENST00000295987 3299 ntAPPRIS P3 TSL 2 BASIC17.62■□□□□ 0.41
NUP88Q99567 NOSIP-201ENST00000339093 1000 ntAPPRIS ALT1 TSL 5 BASIC17.62■□□□□ 0.41
NUP88Q99567 EMC3-AS1-202ENST00000366264 559 ntTSL 4 BASIC17.62■□□□□ 0.41
NUP88Q99567 TREM2-203ENST00000373122 1012 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
NUP88Q99567 LINC01694-201ENST00000424569 821 ntTSL 5 BASIC17.62■□□□□ 0.41
NUP88Q99567 AC006033.1-201ENST00000440505 426 ntBASIC17.62■□□□□ 0.41
NUP88Q99567 CHMP2B-205ENST00000494980 1175 ntTSL 3 BASIC17.62■□□□□ 0.41
NUP88Q99567 RPL27A-202ENST00000524496 558 ntTSL 3 BASIC17.62■□□□□ 0.41
NUP88Q99567 ACYP1-206ENST00000555694 565 ntAPPRIS P1 TSL 3 BASIC17.62■□□□□ 0.41
NUP88Q99567 AC104982.3-201ENST00000581995 514 ntBASIC17.62■□□□□ 0.41
NUP88Q99567 SNX12-206ENST00000622259 661 ntTSL 5 BASIC17.62■□□□□ 0.41
NUP88Q99567 M6PR-202ENST00000536844 2305 ntTSL 3 BASIC17.62■□□□□ 0.41
NUP88Q99567 AP4M1-205ENST00000422582 1814 ntTSL 2 BASIC17.62■□□□□ 0.41
NUP88Q99567 FAM160B1-203ENST00000369250 2870 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
NUP88Q99567 NFE2L2-201ENST00000397062 2853 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
NUP88Q99567 LRP8-202ENST00000347547 2382 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
NUP88Q99567 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC17.62■□□□□ 0.41
NUP88Q99567 NCAPH2-201ENST00000299821 1996 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
NUP88Q99567 AC112693.3-201ENST00000624819 1983 ntBASIC17.62■□□□□ 0.41
NUP88Q99567 GLB1L2-201ENST00000339772 3152 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
NUP88Q99567 REPIN1-209ENST00000479668 3182 ntTSL 2 BASIC17.62■□□□□ 0.41
NUP88Q99567 DPP9-210ENST00000597849 2025 ntTSL 5 BASIC17.62■□□□□ 0.41
NUP88Q99567 UBXN2B-201ENST00000399598 5068 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
NUP88Q99567 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
NUP88Q99567 AL109954.1-202ENST00000564051 2148 ntBASIC17.62■□□□□ 0.41
NUP88Q99567 AL133338.1-201ENST00000565695 1517 ntBASIC17.62■□□□□ 0.41
NUP88Q99567 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
NUP88Q99567 HNRNPK-204ENST00000376263 2942 ntAPPRIS P4 TSL 1 (best) BASIC17.61■□□□□ 0.41
NUP88Q99567 ANKRD30BP2-201ENST00000435744 1610 ntBASIC17.61■□□□□ 0.41
NUP88Q99567 POP4-201ENST00000221770 2321 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
NUP88Q99567 THEMIS2-203ENST00000373925 1650 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
NUP88Q99567 RAI14-202ENST00000428746 5064 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
NUP88Q99567 LRRC57-202ENST00000397130 2384 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
NUP88Q99567 RALGAPA1-203ENST00000389698 7864 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
NUP88Q99567 POFUT2-214ENST00000615172 2472 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
NUP88Q99567 MEF2C-AS1-210ENST00000514011 1754 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
NUP88Q99567 HEMK1-201ENST00000232854 6087 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
NUP88Q99567 CNN1-210ENST00000592923 1848 ntTSL 2 BASIC17.61■□□□□ 0.41
NUP88Q99567 LTBP2-201ENST00000261978 8567 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
NUP88Q99567 SLC4A2-202ENST00000413384 4142 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
NUP88Q99567 AC138904.3-201ENST00000635780 2681 ntTSL 5 BASIC17.61■□□□□ 0.41
NUP88Q99567 PITPNM2-202ENST00000320201 6736 ntAPPRIS P3 TSL 5 BASIC17.61■□□□□ 0.41
NUP88Q99567 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC17.61■□□□□ 0.41
NUP88Q99567 RPA3-201ENST00000223129 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
NUP88Q99567 RABGAP1L-201ENST00000251507 2899 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
NUP88Q99567 APBB1-219ENST00000608704 2095 ntTSL 5 BASIC17.61■□□□□ 0.41
NUP88Q99567 EIF3G-201ENST00000253108 1103 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
NUP88Q99567 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
NUP88Q99567 RPS3-201ENST00000278572 907 ntTSL 3 BASIC17.61■□□□□ 0.41
NUP88Q99567 CRABP1-201ENST00000299529 772 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
NUP88Q99567 UCP2-201ENST00000310473 2113 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
NUP88Q99567 AL022323.1-201ENST00000366110 957 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
NUP88Q99567 RHOG-203ENST00000396979 1289 ntAPPRIS P1 TSL 3 BASIC17.61■□□□□ 0.41
NUP88Q99567 AC010745.3-201ENST00000439745 415 ntTSL 3 BASIC17.61■□□□□ 0.41
NUP88Q99567 AC092944.1-202ENST00000487238 483 ntTSL 4 BASIC17.61■□□□□ 0.41
NUP88Q99567 PRPS2-205ENST00000489404 763 ntTSL 2 BASIC17.61■□□□□ 0.41
NUP88Q99567 KCNK16-205ENST00000507712 889 ntTSL 3 BASIC17.61■□□□□ 0.41
NUP88Q99567 RHOG-204ENST00000533217 886 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
NUP88Q99567 ZNF720-210ENST00000534369 791 ntTSL 3 BASIC17.61■□□□□ 0.41
NUP88Q99567 ANAPC15-208ENST00000538393 867 ntAPPRIS P3 TSL 2 BASIC17.61■□□□□ 0.41
NUP88Q99567 AC106820.3-201ENST00000561653 397 ntBASIC17.61■□□□□ 0.41
NUP88Q99567 AC129510.1-201ENST00000579979 555 ntTSL 3 BASIC17.61■□□□□ 0.41
NUP88Q99567 RN7SL713P-201ENST00000582127 302 ntBASIC17.61■□□□□ 0.41
NUP88Q99567 OCEL1-213ENST00000601529 942 ntTSL 3 BASIC17.61■□□□□ 0.41
NUP88Q99567 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC17.61■□□□□ 0.41
NUP88Q99567 SEMA3B-212ENST00000616701 2958 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
NUP88Q99567 MLF1-216ENST00000618075 2116 ntTSL 5 BASIC17.61■□□□□ 0.41
NUP88Q99567 AL008638.5-201ENST00000623814 1298 ntBASIC17.61■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 66.2 ms