Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 MROH6-201ENST00000398882 3469 ntAPPRIS P2 TSL 5 BASIC14.24□□□□□ -0.13
PTCHD1Q96NR3 REXO1L2P-201ENST00000425429 2069 ntBASIC14.24□□□□□ -0.13
PTCHD1Q96NR3 XPO6-201ENST00000304658 4422 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
PTCHD1Q96NR3 PNPLA5-202ENST00000381198 2000 ntTSL 2 BASIC14.24□□□□□ -0.13
PTCHD1Q96NR3 SLC36A1-207ENST00000520701 2005 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
PTCHD1Q96NR3 SHISA9-201ENST00000423335 4043 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
PTCHD1Q96NR3 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC14.24□□□□□ -0.13
PTCHD1Q96NR3 DDX55-201ENST00000238146 2654 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
PTCHD1Q96NR3 FBLN2-203ENST00000404922 4318 ntAPPRIS P4 TSL 5 BASIC14.24□□□□□ -0.13
PTCHD1Q96NR3 CREB3L3-201ENST00000078445 2618 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
PTCHD1Q96NR3 AC004805.1-201ENST00000577662 1616 ntAPPRIS P1 TSL 2 BASIC14.24□□□□□ -0.13
PTCHD1Q96NR3 PACSIN2-201ENST00000263246 3249 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
PTCHD1Q96NR3 AC093525.2-201ENST00000564543 1944 ntAPPRIS P1 TSL 2 BASIC14.24□□□□□ -0.13
PTCHD1Q96NR3 FLT3LG-201ENST00000204637 1046 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
PTCHD1Q96NR3 POLR2I-201ENST00000221859 913 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
PTCHD1Q96NR3 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
PTCHD1Q96NR3 DYNLRB2-201ENST00000305904 497 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
PTCHD1Q96NR3 TPM3P8-201ENST00000330554 643 ntBASIC14.24□□□□□ -0.13
PTCHD1Q96NR3 AC007319.1-202ENST00000412276 829 ntTSL 5 BASIC14.24□□□□□ -0.13
PTCHD1Q96NR3 CDRT15-201ENST00000420162 766 ntAPPRIS P2 TSL 1 (best) BASIC14.24□□□□□ -0.13
PTCHD1Q96NR3 CDRT15-202ENST00000431716 655 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
PTCHD1Q96NR3 AL049698.1-202ENST00000441716 757 ntTSL 5 BASIC14.24□□□□□ -0.13
PTCHD1Q96NR3 RMDN1-212ENST00000519966 1164 ntTSL 2 BASIC14.24□□□□□ -0.13
PTCHD1Q96NR3 FLJ27354-203ENST00000526694 851 ntTSL 2 BASIC14.24□□□□□ -0.13
PTCHD1Q96NR3 ATXN2-AS-201ENST00000547021 485 ntTSL 2 BASIC14.24□□□□□ -0.13
PTCHD1Q96NR3 SNX29P1-201ENST00000548357 1007 ntBASIC14.24□□□□□ -0.13
PTCHD1Q96NR3 AL132711.1-201ENST00000557546 722 ntTSL 3 BASIC14.24□□□□□ -0.13
PTCHD1Q96NR3 AP005482.1-201ENST00000563722 1273 ntBASIC14.24□□□□□ -0.13
PTCHD1Q96NR3 SLC38A7-207ENST00000564391 731 ntTSL 2 BASIC14.24□□□□□ -0.13
PTCHD1Q96NR3 AC027601.2-201ENST00000571085 805 ntTSL 5 BASIC14.24□□□□□ -0.13
PTCHD1Q96NR3 AC012615.4-201ENST00000586694 607 ntTSL 4 BASIC14.24□□□□□ -0.13
PTCHD1Q96NR3 AL359881.2-201ENST00000602973 570 ntBASIC14.24□□□□□ -0.13
PTCHD1Q96NR3 AC133552.6-201ENST00000613406 534 ntBASIC14.24□□□□□ -0.13
PTCHD1Q96NR3 AL603764.1-201ENST00000636452 321 ntBASIC14.24□□□□□ -0.13
PTCHD1Q96NR3 EXT1-201ENST00000378204 8270 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
PTCHD1Q96NR3 ARFIP1-204ENST00000429148 1599 ntTSL 2 BASIC14.24□□□□□ -0.13
PTCHD1Q96NR3 CCDC51-204ENST00000442740 1554 ntTSL 3 BASIC14.24□□□□□ -0.13
PTCHD1Q96NR3 PSMC3-213ENST00000619920 1580 ntAPPRIS P2 TSL 1 (best) BASIC14.24□□□□□ -0.13
PTCHD1Q96NR3 MEGF11-204ENST00000422354 5914 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
PTCHD1Q96NR3 SIGLEC11-202ENST00000426971 2479 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
PTCHD1Q96NR3 RAF1-205ENST00000442415 3085 ntTSL 5 BASIC14.24□□□□□ -0.13
PTCHD1Q96NR3 SRPK1-204ENST00000373825 4592 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
PTCHD1Q96NR3 JAKMIP1-205ENST00000410077 1835 ntTSL 2 BASIC14.24□□□□□ -0.13
PTCHD1Q96NR3 ANK1-201ENST00000265709 6379 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
PTCHD1Q96NR3 RAB3IL1-201ENST00000301773 2125 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
PTCHD1Q96NR3 ZNF331-217ENST00000512387 2130 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
PTCHD1Q96NR3 ANKRD50-202ENST00000515641 4212 ntTSL 2 BASIC14.24□□□□□ -0.13
PTCHD1Q96NR3 ARHGEF7-204ENST00000375736 5032 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
PTCHD1Q96NR3 TNFSF13-202ENST00000349228 2036 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
PTCHD1Q96NR3 TAS1R1-201ENST00000333172 2892 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
PTCHD1Q96NR3 ESRRB-207ENST00000556177 1427 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
PTCHD1Q96NR3 DRC3-216ENST00000584166 1953 ntTSL 5 BASIC14.23□□□□□ -0.13
PTCHD1Q96NR3 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
PTCHD1Q96NR3 APPL1-201ENST00000288266 6058 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
PTCHD1Q96NR3 FYTTD1-201ENST00000241502 6866 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
PTCHD1Q96NR3 LILRP1-201ENST00000444199 1370 ntBASIC14.23□□□□□ -0.13
PTCHD1Q96NR3 PAK4-205ENST00000593690 3025 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
PTCHD1Q96NR3 CREB3L3-204ENST00000602147 1382 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
PTCHD1Q96NR3 ZFP41-203ENST00000520584 3284 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
PTCHD1Q96NR3 ANKRD44-203ENST00000409153 2724 ntTSL 2 BASIC14.23□□□□□ -0.13
PTCHD1Q96NR3 ZSCAN10-209ENST00000576985 2739 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
PTCHD1Q96NR3 TINF2-202ENST00000399423 2168 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
PTCHD1Q96NR3 C20orf202-201ENST00000400633 1604 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
PTCHD1Q96NR3 FKBP5-201ENST00000357266 3772 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
PTCHD1Q96NR3 SLC52A3-201ENST00000217254 2654 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
PTCHD1Q96NR3 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
PTCHD1Q96NR3 TUFT1-201ENST00000353024 2107 ntTSL 2 BASIC14.23□□□□□ -0.13
PTCHD1Q96NR3 MTRF1L-201ENST00000367230 3431 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
PTCHD1Q96NR3 NAXD-202ENST00000424185 2311 ntTSL 2 BASIC14.23□□□□□ -0.13
PTCHD1Q96NR3 RET-202ENST00000355710 5659 ntAPPRIS P3 TSL 5 BASIC14.23□□□□□ -0.13
PTCHD1Q96NR3 SPAG9-222ENST00000618113 8246 ntAPPRIS ALT1 TSL 5 BASIC14.23□□□□□ -0.13
PTCHD1Q96NR3 POLDIP3-202ENST00000339677 783 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
PTCHD1Q96NR3 CKLF-203ENST00000351137 508 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
PTCHD1Q96NR3 NAA10-201ENST00000370009 837 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
PTCHD1Q96NR3 NAA10-203ENST00000370015 1002 ntTSL 5 BASIC14.23□□□□□ -0.13
PTCHD1Q96NR3 TSPAN32-204ENST00000381121 999 ntAPPRIS ALT2 TSL 5 BASIC14.23□□□□□ -0.13
PTCHD1Q96NR3 SELENOM-201ENST00000400299 694 ntAPPRIS P2 TSL 1 (best) BASIC14.23□□□□□ -0.13
PTCHD1Q96NR3 LINC01939-201ENST00000445279 694 ntTSL 5 BASIC14.23□□□□□ -0.13
PTCHD1Q96NR3 AC103563.7-201ENST00000448734 478 ntTSL 3 BASIC14.23□□□□□ -0.13
PTCHD1Q96NR3 AL157834.2-201ENST00000451737 663 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
PTCHD1Q96NR3 HOXC-AS3-201ENST00000509870 544 ntTSL 4 BASIC14.23□□□□□ -0.13
PTCHD1Q96NR3 CEP57L1-208ENST00000519095 908 ntTSL 3 BASIC14.23□□□□□ -0.13
PTCHD1Q96NR3 AC100818.1-201ENST00000524167 563 ntTSL 4 BASIC14.23□□□□□ -0.13
PTCHD1Q96NR3 IL32-218ENST00000530890 774 ntAPPRIS ALT2 TSL 2 BASIC14.23□□□□□ -0.13
PTCHD1Q96NR3 CACNA2D4-208ENST00000538027 952 ntTSL 5 BASIC14.23□□□□□ -0.13
PTCHD1Q96NR3 KRT90P-201ENST00000549264 1064 ntBASIC14.23□□□□□ -0.13
PTCHD1Q96NR3 GCHFR-204ENST00000559445 626 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
PTCHD1Q96NR3 CMTM3-212ENST00000566121 572 ntTSL 3 BASIC14.23□□□□□ -0.13
PTCHD1Q96NR3 DUX4L47-201ENST00000566374 394 ntBASIC14.23□□□□□ -0.13
PTCHD1Q96NR3 RN7SL48P-201ENST00000579283 293 ntBASIC14.23□□□□□ -0.13
PTCHD1Q96NR3 ETV2-208ENST00000621247 941 ntTSL 5 BASIC14.23□□□□□ -0.13
PTCHD1Q96NR3 CHRDL1-205ENST00000482160 1537 ntTSL 2 BASIC14.23□□□□□ -0.13
PTCHD1Q96NR3 HSD17B6-205ENST00000554643 1751 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
PTCHD1Q96NR3 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
PTCHD1Q96NR3 SLC25A34-201ENST00000294454 2986 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
PTCHD1Q96NR3 PDZD3-212ENST00000531114 2996 ntTSL 2 BASIC14.23□□□□□ -0.13
PTCHD1Q96NR3 MAP4K1-210ENST00000591517 2700 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
PTCHD1Q96NR3 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC14.23□□□□□ -0.13
PTCHD1Q96NR3 PNPLA3-203ENST00000423180 2222 ntTSL 2 BASIC14.23□□□□□ -0.13
PTCHD1Q96NR3 RAI2-204ENST00000451717 2224 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 49.1 ms