Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 AC025181.2-201ENST00000606994 802 ntBASIC14.67□□□□□ -0.06
CLIP3Q96DZ5 AC011447.5-201ENST00000616168 564 ntBASIC14.67□□□□□ -0.06
CLIP3Q96DZ5 SYNE2-228ENST00000639659 1290 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
CLIP3Q96DZ5 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
CLIP3Q96DZ5 TAB2-208ENST00000636456 3092 ntTSL 5 BASIC14.67□□□□□ -0.06
CLIP3Q96DZ5 ELP1-201ENST00000374647 5905 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CLIP3Q96DZ5 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CLIP3Q96DZ5 FBLN7-203ENST00000409450 1394 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
CLIP3Q96DZ5 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
CLIP3Q96DZ5 P2RY4-201ENST00000374519 1595 ntAPPRIS P1 BASIC14.67□□□□□ -0.06
CLIP3Q96DZ5 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC14.67□□□□□ -0.06
CLIP3Q96DZ5 PHLDB2-203ENST00000412622 5996 ntTSL 5 BASIC14.67□□□□□ -0.06
CLIP3Q96DZ5 OSBPL5-210ENST00000525498 2733 ntTSL 2 BASIC14.67□□□□□ -0.06
CLIP3Q96DZ5 ABCC9-203ENST00000326684 1693 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
CLIP3Q96DZ5 SOCS5-202ENST00000394861 4058 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CLIP3Q96DZ5 DCUN1D4-203ENST00000451288 4269 ntTSL 2 BASIC14.67□□□□□ -0.06
CLIP3Q96DZ5 COL5A1-208ENST00000618395 8437 ntAPPRIS ALT2 TSL 5 BASIC14.67□□□□□ -0.06
CLIP3Q96DZ5 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
CLIP3Q96DZ5 HSD17B4-222ENST00000515320 2494 ntTSL 2 BASIC14.67□□□□□ -0.06
CLIP3Q96DZ5 ARHGAP9-201ENST00000393791 2597 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
CLIP3Q96DZ5 CAMKK2-209ENST00000446440 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
CLIP3Q96DZ5 REEP3-201ENST00000373758 5205 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CLIP3Q96DZ5 ZNF202-206ENST00000529691 3384 ntAPPRIS P1 TSL 2 BASIC14.67□□□□□ -0.06
CLIP3Q96DZ5 AATBC-201ENST00000400385 4598 ntTSL 2 BASIC14.66□□□□□ -0.06
CLIP3Q96DZ5 UBE4B-201ENST00000253251 4772 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CLIP3Q96DZ5 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC14.66□□□□□ -0.06
CLIP3Q96DZ5 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC14.66□□□□□ -0.06
CLIP3Q96DZ5 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
CLIP3Q96DZ5 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CLIP3Q96DZ5 PRF1-202ENST00000441259 2533 ntAPPRIS P1 TSL 5 BASIC14.66□□□□□ -0.06
CLIP3Q96DZ5 RBPMS-202ENST00000320203 3110 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
CLIP3Q96DZ5 DEF8-210ENST00000563594 4450 ntAPPRIS P4 TSL 1 (best) BASIC14.66□□□□□ -0.06
CLIP3Q96DZ5 LANCL2-201ENST00000254770 4353 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CLIP3Q96DZ5 FAM110C-201ENST00000327669 3760 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CLIP3Q96DZ5 WDR24-201ENST00000248142 2763 ntTSL 5 BASIC14.66□□□□□ -0.06
CLIP3Q96DZ5 PTPN9-206ENST00000618819 7813 ntAPPRIS P2 TSL 1 (best) BASIC14.66□□□□□ -0.06
CLIP3Q96DZ5 SPDYE16-203ENST00000633306 2591 ntAPPRIS ALT2 TSL 5 BASIC14.66□□□□□ -0.06
CLIP3Q96DZ5 AUTS2-218ENST00000615871 4511 ntTSL 5 BASIC14.66□□□□□ -0.06
CLIP3Q96DZ5 ATRN-202ENST00000446916 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
CLIP3Q96DZ5 RAB41-201ENST00000276066 1071 ntAPPRIS P2 TSL 1 (best) BASIC14.66□□□□□ -0.06
CLIP3Q96DZ5 RAB41-202ENST00000374473 1074 ntAPPRIS ALT2 TSL 5 BASIC14.66□□□□□ -0.06
CLIP3Q96DZ5 MPV17-203ENST00000380044 1005 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CLIP3Q96DZ5 ZG16B-201ENST00000382280 831 ntAPPRIS P2 TSL 1 (best) BASIC14.66□□□□□ -0.06
CLIP3Q96DZ5 AC092933.1-201ENST00000393644 945 ntBASIC14.66□□□□□ -0.06
CLIP3Q96DZ5 HSPC324-201ENST00000411904 557 ntTSL 2 BASIC14.66□□□□□ -0.06
CLIP3Q96DZ5 RPL7P3-201ENST00000441388 714 ntBASIC14.66□□□□□ -0.06
CLIP3Q96DZ5 CEP57L1-208ENST00000519095 908 ntTSL 3 BASIC14.66□□□□□ -0.06
CLIP3Q96DZ5 MFF-223ENST00000524634 647 ntTSL 2 BASIC14.66□□□□□ -0.06
CLIP3Q96DZ5 AC116456.1-201ENST00000526646 815 ntTSL 3 BASIC14.66□□□□□ -0.06
CLIP3Q96DZ5 AL118558.1-202ENST00000557242 451 ntTSL 3 BASIC14.66□□□□□ -0.06
CLIP3Q96DZ5 AP001005.4-201ENST00000572530 387 ntTSL 3 BASIC14.66□□□□□ -0.06
CLIP3Q96DZ5 ZNF790-AS1-204ENST00000589556 650 ntTSL 2 BASIC14.66□□□□□ -0.06
CLIP3Q96DZ5 AP005019.2-201ENST00000615104 511 ntBASIC14.66□□□□□ -0.06
CLIP3Q96DZ5 MIR6799-201ENST00000620297 69 ntBASIC14.66□□□□□ -0.06
CLIP3Q96DZ5 TRIM13-202ENST00000378182 7249 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
CLIP3Q96DZ5 IFNAR1-201ENST00000270139 6139 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CLIP3Q96DZ5 SFRP1-202ENST00000379845 3873 ntTSL 2 BASIC14.66□□□□□ -0.06
CLIP3Q96DZ5 SP8-203ENST00000617581 3496 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
CLIP3Q96DZ5 APPL1-201ENST00000288266 6058 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CLIP3Q96DZ5 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CLIP3Q96DZ5 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
CLIP3Q96DZ5 FKBP5-203ENST00000539068 3827 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CLIP3Q96DZ5 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC14.66□□□□□ -0.06
CLIP3Q96DZ5 RPS6KL1-210ENST00000555647 3309 ntAPPRIS P1 TSL 5 BASIC14.66□□□□□ -0.06
CLIP3Q96DZ5 ENO3-206ENST00000519584 1322 ntTSL 2 BASIC14.66□□□□□ -0.06
CLIP3Q96DZ5 LARGE1-201ENST00000354992 4409 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
CLIP3Q96DZ5 RGS3-208ENST00000394646 2716 ntTSL 2 BASIC14.65□□□□□ -0.06
CLIP3Q96DZ5 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
CLIP3Q96DZ5 AMOTL2-201ENST00000249883 4488 ntAPPRIS P3 TSL 1 (best) BASIC14.65□□□□□ -0.06
CLIP3Q96DZ5 SYBU-204ENST00000408908 2983 ntAPPRIS ALT2 TSL 5 BASIC14.65□□□□□ -0.06
CLIP3Q96DZ5 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
CLIP3Q96DZ5 SMAD2-202ENST00000356825 10445 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
CLIP3Q96DZ5 LINC01565-201ENST00000356020 2697 ntTSL 2 BASIC14.65□□□□□ -0.06
CLIP3Q96DZ5 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC14.65□□□□□ -0.06
CLIP3Q96DZ5 HOXB4-201ENST00000332503 3757 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
CLIP3Q96DZ5 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC14.65□□□□□ -0.06
CLIP3Q96DZ5 AEN-201ENST00000332810 3117 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
CLIP3Q96DZ5 AP3M2-201ENST00000174653 3661 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.06
CLIP3Q96DZ5 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
CLIP3Q96DZ5 RASSF5-201ENST00000577571 3496 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
CLIP3Q96DZ5 PRKN-201ENST00000338468 1276 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
CLIP3Q96DZ5 GZMB-202ENST00000382540 816 ntTSL 5 BASIC14.65□□□□□ -0.06
CLIP3Q96DZ5 IGLV2-23-201ENST00000390306 502 ntAPPRIS P1 BASIC14.65□□□□□ -0.06
CLIP3Q96DZ5 IGHV3-35-201ENST00000390617 366 ntAPPRIS P1 BASIC14.65□□□□□ -0.06
CLIP3Q96DZ5 IFITM3-201ENST00000399808 808 ntAPPRIS P2 TSL 1 (best) BASIC14.65□□□□□ -0.06
CLIP3Q96DZ5 BLVRA-202ENST00000402924 1161 ntAPPRIS P1 TSL 2 BASIC14.65□□□□□ -0.06
CLIP3Q96DZ5 LIMS3-201ENST00000437679 1220 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
CLIP3Q96DZ5 KCNQ1-AS1-201ENST00000440887 1084 ntTSL 5 BASIC14.65□□□□□ -0.06
CLIP3Q96DZ5 POLR2B-205ENST00000441246 3839 ntTSL 2 BASIC14.65□□□□□ -0.06
CLIP3Q96DZ5 MDH2-205ENST00000461263 648 ntTSL 2 BASIC14.65□□□□□ -0.06
CLIP3Q96DZ5 PFN2-205ENST00000461868 613 ntTSL 2 BASIC14.65□□□□□ -0.06
CLIP3Q96DZ5 HOXC-AS3-201ENST00000509870 544 ntTSL 4 BASIC14.65□□□□□ -0.06
CLIP3Q96DZ5 STMN4-207ENST00000523048 1224 ntTSL 2 BASIC14.65□□□□□ -0.06
CLIP3Q96DZ5 ATF7-204ENST00000548118 774 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
CLIP3Q96DZ5 AL163974.1-201ENST00000554540 466 ntTSL 5 BASIC14.65□□□□□ -0.06
CLIP3Q96DZ5 AC010641.1-201ENST00000591757 529 ntTSL 3 BASIC14.65□□□□□ -0.06
CLIP3Q96DZ5 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
CLIP3Q96DZ5 KANK2-207ENST00000589894 2703 ntAPPRIS ALT2 TSL 5 BASIC14.65□□□□□ -0.06
CLIP3Q96DZ5 CICP23-201ENST00000605013 2741 ntBASIC14.65□□□□□ -0.06
CLIP3Q96DZ5 MFF-204ENST00000353339 2186 ntTSL 5 BASIC14.65□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 64.1 ms