Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC15.06■□□□□ 0
HMGB4Q8WW32 BCL2L11-219ENST00000619294 5132 ntTSL 5 BASIC15.06■□□□□ 0
HMGB4Q8WW32 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC15.06■□□□□ 0
HMGB4Q8WW32 SLC18A2-201ENST00000298472 3852 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
HMGB4Q8WW32 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC15.06■□□□□ 0
HMGB4Q8WW32 TMEM97-201ENST00000226230 2568 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
HMGB4Q8WW32 CELF2-206ENST00000608830 1892 ntAPPRIS ALT1 TSL 1 (best) BASIC15.06■□□□□ 0
HMGB4Q8WW32 AC067930.6-201ENST00000623257 4947 ntBASIC15.06■□□□□ 0
HMGB4Q8WW32 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC15.06■□□□□ 0
HMGB4Q8WW32 PBX3-204ENST00000373489 2775 ntAPPRIS P3 TSL 1 (best) BASIC15.06■□□□□ 0
HMGB4Q8WW32 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
HMGB4Q8WW32 NAGK-201ENST00000244204 1154 ntAPPRIS P5 TSL 1 (best) BASIC15.06■□□□□ 0
HMGB4Q8WW32 CRYBA4-201ENST00000354760 811 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
HMGB4Q8WW32 RHOG-203ENST00000396979 1289 ntAPPRIS P1 TSL 3 BASIC15.06■□□□□ 0
HMGB4Q8WW32 TPT1-AS1-203ENST00000412946 744 ntTSL 3 BASIC15.06■□□□□ 0
HMGB4Q8WW32 FTLP1-201ENST00000449155 526 ntBASIC15.06■□□□□ 0
HMGB4Q8WW32 RPS2P36-201ENST00000456516 831 ntBASIC15.06■□□□□ 0
HMGB4Q8WW32 RPL18P13-201ENST00000478088 569 ntBASIC15.06■□□□□ 0
HMGB4Q8WW32 AC125604.1-201ENST00000496255 707 ntBASIC15.06■□□□□ 0
HMGB4Q8WW32 GATD1-205ENST00000524550 995 ntTSL 1 (best) BASIC15.06■□□□□ 0
HMGB4Q8WW32 NDUFC2-204ENST00000528164 561 ntTSL 2 BASIC15.06■□□□□ 0
HMGB4Q8WW32 RHOG-204ENST00000533217 886 ntAPPRIS P1 TSL 5 BASIC15.06■□□□□ 0
HMGB4Q8WW32 AC100858.3-202ENST00000533496 553 ntTSL 4 BASIC15.06■□□□□ 0
HMGB4Q8WW32 AC138123.2-203ENST00000552451 653 ntTSL 3 BASIC15.06■□□□□ 0
HMGB4Q8WW32 AL161670.2-201ENST00000557650 1227 ntBASIC15.06■□□□□ 0
HMGB4Q8WW32 CARHSP1-203ENST00000561530 729 ntAPPRIS P1 TSL 3 BASIC15.06■□□□□ 0
HMGB4Q8WW32 DUX4L46-201ENST00000566845 751 ntBASIC15.06■□□□□ 0
HMGB4Q8WW32 AC008743.1-201ENST00000596350 813 ntTSL 4 BASIC15.06■□□□□ 0
HMGB4Q8WW32 AC138696.2-201ENST00000607376 223 ntBASIC15.06■□□□□ 0
HMGB4Q8WW32 U62317.3-201ENST00000608319 855 ntBASIC15.06■□□□□ 0
HMGB4Q8WW32 SMIM22-211ENST00000615889 1047 ntAPPRIS P4 TSL 5 BASIC15.06■□□□□ 0
HMGB4Q8WW32 MIR6727-201ENST00000620702 65 ntBASIC15.06■□□□□ 0
HMGB4Q8WW32 SLC16A3-211ENST00000581287 4830 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
HMGB4Q8WW32 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
HMGB4Q8WW32 COLEC11-201ENST00000236693 1381 ntTSL 1 (best) BASIC15.06■□□□□ 0
HMGB4Q8WW32 CUX1-211ENST00000546411 4212 ntAPPRIS ALT2 TSL 5 BASIC15.06■□□□□ 0
HMGB4Q8WW32 BRMS1-201ENST00000359957 1445 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
HMGB4Q8WW32 FBXL5-201ENST00000341285 3385 ntAPPRIS P3 TSL 1 (best) BASIC15.06■□□□□ 0
HMGB4Q8WW32 CCDC121-202ENST00000394775 1472 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
HMGB4Q8WW32 FRMPD4-201ENST00000380682 8465 ntAPPRIS P2 TSL 1 (best) BASIC15.06■□□□□ 0
HMGB4Q8WW32 ANKS6-202ENST00000375019 2586 ntTSL 5 BASIC15.06■□□□□ 0
HMGB4Q8WW32 AC010327.3-201ENST00000591665 1643 ntTSL 2 BASIC15.06■□□□□ 0
HMGB4Q8WW32 PITPNC1-203ENST00000580974 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
HMGB4Q8WW32 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC15.06■□□□□ 0
HMGB4Q8WW32 TPGS2-202ENST00000383056 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
HMGB4Q8WW32 PCCB-204ENST00000462637 1715 ntAPPRIS ALT2 TSL 3 BASIC15.06■□□□□ 0
HMGB4Q8WW32 BACE2-203ENST00000347667 8764 ntTSL 1 (best) BASIC15.06■□□□□ 0
HMGB4Q8WW32 LIMS1-202ENST00000338045 1876 ntTSL 1 (best) BASIC15.06■□□□□ 0
HMGB4Q8WW32 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC15.06■□□□□ 0
HMGB4Q8WW32 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC15.05■□□□□ 0
HMGB4Q8WW32 AP005117.1-202ENST00000581724 1908 ntBASIC15.05■□□□□ 0
HMGB4Q8WW32 FRMD5-202ENST00000417257 5011 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
HMGB4Q8WW32 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
HMGB4Q8WW32 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC15.05■□□□□ 0
HMGB4Q8WW32 CRK-201ENST00000300574 3880 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
HMGB4Q8WW32 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC15.05■□□□□ 0
HMGB4Q8WW32 PIK3R1-211ENST00000521381 7011 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
HMGB4Q8WW32 PPM1F-203ENST00000407142 5587 ntAPPRIS ALT2 TSL 5 BASIC15.05■□□□□ 0
HMGB4Q8WW32 GLS2-201ENST00000311966 2623 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
HMGB4Q8WW32 MEG9-201ENST00000429368 2638 ntTSL 2 BASIC15.05■□□□□ 0
HMGB4Q8WW32 ZCCHC18-203ENST00000537356 2907 ntAPPRIS P1 TSL 5 BASIC15.05■□□□□ 0
HMGB4Q8WW32 HDAC5-202ENST00000336057 5040 ntTSL 1 (best) BASIC15.05■□□□□ 0
HMGB4Q8WW32 AHCYL2-202ENST00000446544 5026 ntAPPRIS ALT1 TSL 1 (best) BASIC15.05■□□□□ 0
HMGB4Q8WW32 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC15.05■□□□□ 0
HMGB4Q8WW32 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC15.05■□□□□ -0
HMGB4Q8WW32 TGOLN2-203ENST00000398263 6138 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ -0
HMGB4Q8WW32 ARF5-201ENST00000000233 1103 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
HMGB4Q8WW32 HMGN3-201ENST00000275036 831 ntTSL 1 (best) BASIC15.05■□□□□ -0
HMGB4Q8WW32 RPP40-201ENST00000319533 1088 ntTSL 1 (best) BASIC15.05■□□□□ -0
HMGB4Q8WW32 HMGN3-202ENST00000344726 872 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
HMGB4Q8WW32 GAD1-203ENST00000375272 1252 ntTSL 1 (best) BASIC15.05■□□□□ -0
HMGB4Q8WW32 MIR33B-201ENST00000385104 96 ntBASIC15.05■□□□□ -0
HMGB4Q8WW32 GTF2A2-205ENST00000396064 633 ntTSL 3 BASIC15.05■□□□□ -0
HMGB4Q8WW32 OSM-202ENST00000403389 1000 ntAPPRIS ALT2 TSL 3 BASIC15.05■□□□□ -0
HMGB4Q8WW32 SUMO1-204ENST00000409181 784 ntTSL 3 BASIC15.05■□□□□ -0
HMGB4Q8WW32 SUMO1-207ENST00000409498 779 ntTSL 3 BASIC15.05■□□□□ -0
HMGB4Q8WW32 AL596276.2-201ENST00000447525 331 ntBASIC15.05■□□□□ -0
HMGB4Q8WW32 AL160290.2-202ENST00000448671 574 ntTSL 3 BASIC15.05■□□□□ -0
HMGB4Q8WW32 KLK11-204ENST00000453757 1174 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ -0
HMGB4Q8WW32 PABPC5-AS1-201ENST00000456187 426 ntTSL 5 BASIC15.05■□□□□ -0
HMGB4Q8WW32 GTF2A2-208ENST00000484743 408 ntTSL 2 BASIC15.05■□□□□ -0
HMGB4Q8WW32 PRSS30P-205ENST00000506153 699 ntTSL 1 (best) BASIC15.05■□□□□ -0
HMGB4Q8WW32 AP001547.1-201ENST00000527440 374 ntTSL 3 BASIC15.05■□□□□ -0
HMGB4Q8WW32 ORAOV1-211ENST00000542341 775 ntTSL 2 BASIC15.05■□□□□ -0
HMGB4Q8WW32 PSORS1C1-206ENST00000547221 655 ntAPPRIS ALT2 TSL 3 BASIC15.05■□□□□ -0
HMGB4Q8WW32 AC093525.1-201ENST00000569317 596 ntAPPRIS P1 TSL 3 BASIC15.05■□□□□ -0
HMGB4Q8WW32 NRN1L-202ENST00000576147 681 ntAPPRIS ALT2 TSL 2 BASIC15.05■□□□□ -0
HMGB4Q8WW32 AC005324.6-201ENST00000587972 613 ntBASIC15.05■□□□□ -0
HMGB4Q8WW32 CROCCP3-204ENST00000590118 574 ntTSL 4 BASIC15.05■□□□□ -0
HMGB4Q8WW32 CLEC11A-202ENST00000599973 1026 ntTSL 1 (best) BASIC15.05■□□□□ -0
HMGB4Q8WW32 GNAQ-201ENST00000286548 6539 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
HMGB4Q8WW32 RB1CC1-201ENST00000025008 6635 ntAPPRIS P3 TSL 1 (best) BASIC15.05■□□□□ -0
HMGB4Q8WW32 AC090515.2-201ENST00000500929 1396 ntTSL 1 (best) BASIC15.05■□□□□ -0
HMGB4Q8WW32 ACTR2-205ENST00000542850 1429 ntTSL 1 (best) BASIC15.05■□□□□ -0
HMGB4Q8WW32 PLXNB1-202ENST00000358536 7308 ntAPPRIS P2 TSL 1 (best) BASIC15.05■□□□□ -0
HMGB4Q8WW32 AC012508.2-201ENST00000567613 1472 ntBASIC15.05■□□□□ -0
HMGB4Q8WW32 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC15.05■□□□□ -0
HMGB4Q8WW32 CRELD1-203ENST00000397170 1728 ntAPPRIS P1 TSL 5 BASIC15.05■□□□□ -0
HMGB4Q8WW32 AP4M1-205ENST00000422582 1814 ntTSL 2 BASIC15.05■□□□□ -0
HMGB4Q8WW32 STK33-217ENST00000534493 1895 ntTSL 2 BASIC15.05■□□□□ -0
Retrieved 100 of 98,524 protein–RNA pairs in 41.1 ms