Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 PCDHGB1-202ENST00000611598 2592 ntAPPRIS ALT2 BASIC15.3■□□□□ 0.04
SHROOM3Q8TF72 PGPEP1-201ENST00000252813 1409 ntTSL 2 BASIC15.3■□□□□ 0.04
SHROOM3Q8TF72 ACTR2-205ENST00000542850 1429 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
SHROOM3Q8TF72 PNMA3-202ENST00000593810 1432 ntAPPRIS P1 BASIC15.3■□□□□ 0.04
SHROOM3Q8TF72 NCR1-201ENST00000291890 1155 ntAPPRIS P3 TSL 5 BASIC15.3■□□□□ 0.04
SHROOM3Q8TF72 IFNL2-201ENST00000331982 737 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
SHROOM3Q8TF72 PLAC9-201ENST00000372263 785 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
SHROOM3Q8TF72 EDN2-201ENST00000372587 1241 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
SHROOM3Q8TF72 SPEG-202ENST00000396686 1086 ntTSL 3 BASIC15.3■□□□□ 0.04
SHROOM3Q8TF72 AC078785.1-201ENST00000496389 734 ntTSL 3 BASIC15.3■□□□□ 0.04
SHROOM3Q8TF72 PLEKHB1-206ENST00000535129 1049 ntAPPRIS ALT1 TSL 2 BASIC15.3■□□□□ 0.04
SHROOM3Q8TF72 RAB40B-202ENST00000538809 704 ntTSL 2 BASIC15.3■□□□□ 0.04
SHROOM3Q8TF72 RN7SL713P-201ENST00000582127 302 ntBASIC15.3■□□□□ 0.04
SHROOM3Q8TF72 AC243960.2-201ENST00000600996 747 ntBASIC15.3■□□□□ 0.04
SHROOM3Q8TF72 AC138951.2-201ENST00000623455 1161 ntBASIC15.3■□□□□ 0.04
SHROOM3Q8TF72 KIF22-208ENST00000569382 2020 ntTSL 5 BASIC15.3■□□□□ 0.04
SHROOM3Q8TF72 AL354702.1-201ENST00000442006 1960 ntBASIC15.3■□□□□ 0.04
SHROOM3Q8TF72 TSFM-207ENST00000540550 1935 ntTSL 2 BASIC15.3■□□□□ 0.04
SHROOM3Q8TF72 UBE3A-227ENST00000638011 8742 ntAPPRIS ALT1 TSL 5 BASIC15.3■□□□□ 0.04
SHROOM3Q8TF72 PRSS8-201ENST00000317508 1872 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
SHROOM3Q8TF72 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
SHROOM3Q8TF72 RSPO1-202ENST00000401068 2320 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
SHROOM3Q8TF72 RASSF5-201ENST00000577571 3496 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
SHROOM3Q8TF72 KREMEN1-201ENST00000327813 2719 ntAPPRIS P3 TSL 2 BASIC15.3■□□□□ 0.04
SHROOM3Q8TF72 NMUR1-201ENST00000305141 3298 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
SHROOM3Q8TF72 SLC25A19-202ENST00000375261 1486 ntTSL 5 BASIC15.3■□□□□ 0.04
SHROOM3Q8TF72 FAM153A-220ENST00000513554 1437 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
SHROOM3Q8TF72 STIP1-207ENST00000538945 1900 ntTSL 2 BASIC15.29■□□□□ 0.04
SHROOM3Q8TF72 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC15.29■□□□□ 0.04
SHROOM3Q8TF72 WDR45-224ENST00000485908 1301 ntTSL 5 BASIC15.29■□□□□ 0.04
SHROOM3Q8TF72 PPM1B-204ENST00000378551 3877 ntAPPRIS ALT1 TSL 1 (best) BASIC15.29■□□□□ 0.04
SHROOM3Q8TF72 RPS15-201ENST00000233609 534 ntTSL 2 BASIC15.29■□□□□ 0.04
SHROOM3Q8TF72 BLVRA-202ENST00000402924 1161 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
SHROOM3Q8TF72 USB1-202ENST00000423271 1217 ntTSL 2 BASIC15.29■□□□□ 0.04
SHROOM3Q8TF72 CROCCP4-201ENST00000457096 498 ntBASIC15.29■□□□□ 0.04
SHROOM3Q8TF72 AC078819.1-201ENST00000547454 765 ntBASIC15.29■□□□□ 0.04
SHROOM3Q8TF72 AC012085.1-201ENST00000548270 765 ntBASIC15.29■□□□□ 0.04
SHROOM3Q8TF72 AC027237.1-201ENST00000560942 655 ntBASIC15.29■□□□□ 0.04
SHROOM3Q8TF72 RPS15-205ENST00000586686 562 ntTSL 5 BASIC15.29■□□□□ 0.04
SHROOM3Q8TF72 RPS15-208ENST00000591804 711 ntTSL 5 BASIC15.29■□□□□ 0.04
SHROOM3Q8TF72 RPS15-209ENST00000592588 510 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
SHROOM3Q8TF72 YTHDC1-202ENST00000355665 3244 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
SHROOM3Q8TF72 AMPD2-218ENST00000528454 2728 ntTSL 2 BASIC15.29■□□□□ 0.04
SHROOM3Q8TF72 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
SHROOM3Q8TF72 MGEA5-202ENST00000361464 5155 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
SHROOM3Q8TF72 CIAPIN1-213ENST00000569370 1559 ntTSL 3 BASIC15.29■□□□□ 0.04
SHROOM3Q8TF72 INHBE-201ENST00000266646 2429 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
SHROOM3Q8TF72 ALDH4A1-205ENST00000538309 1940 ntTSL 2 BASIC15.29■□□□□ 0.04
SHROOM3Q8TF72 SLC41A3-204ENST00000383598 2330 ntAPPRIS P3 TSL 2 BASIC15.29■□□□□ 0.04
SHROOM3Q8TF72 KAT5-216ENST00000534650 1875 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
SHROOM3Q8TF72 ACSF2-202ENST00000427954 2251 ntTSL 2 BASIC15.29■□□□□ 0.04
SHROOM3Q8TF72 FABP1-202ENST00000393750 1839 ntTSL 2 BASIC15.29■□□□□ 0.04
SHROOM3Q8TF72 NEK11-205ENST00000507910 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
SHROOM3Q8TF72 HCK-209ENST00000538448 2215 ntAPPRIS ALT2 TSL 2 BASIC15.29■□□□□ 0.04
SHROOM3Q8TF72 HNRNPUL1-201ENST00000263367 2952 ntTSL 2 BASIC15.29■□□□□ 0.04
SHROOM3Q8TF72 PHF3-209ENST00000509330 2969 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
SHROOM3Q8TF72 ZNF79-202ENST00000543471 2194 ntTSL 2 BASIC15.29■□□□□ 0.04
SHROOM3Q8TF72 ZNF79-203ENST00000612342 2192 ntTSL 2 BASIC15.29■□□□□ 0.04
SHROOM3Q8TF72 SCLY-202ENST00000409736 1774 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
SHROOM3Q8TF72 ITGB1BP1-204ENST00000360635 4859 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
SHROOM3Q8TF72 HCG27-201ENST00000383331 1720 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
SHROOM3Q8TF72 BOLA3-201ENST00000295326 444 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
SHROOM3Q8TF72 RPL13A-201ENST00000391857 1181 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
SHROOM3Q8TF72 THAP4-202ENST00000402136 785 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
SHROOM3Q8TF72 CYB5R3-203ENST00000402438 1050 ntTSL 5 BASIC15.29■□□□□ 0.04
SHROOM3Q8TF72 MIR663B-201ENST00000408361 115 ntBASIC15.29■□□□□ 0.04
SHROOM3Q8TF72 AC136475.5-202ENST00000524824 587 ntTSL 4 BASIC15.29■□□□□ 0.04
SHROOM3Q8TF72 IFITM1-204ENST00000528780 730 ntAPPRIS P1 TSL 3 BASIC15.29■□□□□ 0.04
SHROOM3Q8TF72 AC125603.3-201ENST00000550742 486 ntTSL 3 BASIC15.29■□□□□ 0.04
SHROOM3Q8TF72 VASH1-AS1-201ENST00000554058 871 ntTSL 3 BASIC15.29■□□□□ 0.04
SHROOM3Q8TF72 AC009133.2-201ENST00000566537 547 ntTSL 4 BASIC15.29■□□□□ 0.04
SHROOM3Q8TF72 AC007611.1-201ENST00000568150 826 ntTSL 2 BASIC15.29■□□□□ 0.04
SHROOM3Q8TF72 LINC02351-201ENST00000614728 289 ntTSL 2 BASIC15.29■□□□□ 0.04
SHROOM3Q8TF72 C9orf50-202ENST00000619117 796 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
SHROOM3Q8TF72 AC233723.1-201ENST00000635921 386 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
SHROOM3Q8TF72 TP73-208ENST00000378295 5188 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
SHROOM3Q8TF72 EDEM2-202ENST00000374492 1919 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
SHROOM3Q8TF72 PSMD13-203ENST00000431206 1591 ntTSL 2 BASIC15.29■□□□□ 0.04
SHROOM3Q8TF72 LINC02273-201ENST00000499452 1592 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
SHROOM3Q8TF72 AIFM2-202ENST00000373248 2570 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
SHROOM3Q8TF72 SCFD2-201ENST00000388940 2221 ntTSL 2 BASIC15.29■□□□□ 0.04
SHROOM3Q8TF72 KNSTRN-202ENST00000416151 1899 ntTSL 3 BASIC15.29■□□□□ 0.04
SHROOM3Q8TF72 PGA5-201ENST00000312403 1519 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
SHROOM3Q8TF72 UBE3B-212ENST00000540230 1541 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
SHROOM3Q8TF72 NFIX-208ENST00000587260 1537 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
SHROOM3Q8TF72 VWA7-201ENST00000375688 2881 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
SHROOM3Q8TF72 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC15.29■□□□□ 0.04
SHROOM3Q8TF72 CDCA7-202ENST00000347703 2500 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
SHROOM3Q8TF72 HIC2-201ENST00000407464 6798 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
SHROOM3Q8TF72 OSBPL5-210ENST00000525498 2733 ntTSL 2 BASIC15.28■□□□□ 0.04
SHROOM3Q8TF72 RABL6-211ENST00000629216 1416 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
SHROOM3Q8TF72 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
SHROOM3Q8TF72 RNPS1-216ENST00000565678 2298 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
SHROOM3Q8TF72 SLC2A10-201ENST00000359271 4389 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
SHROOM3Q8TF72 FBXO5-202ENST00000367241 2221 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
SHROOM3Q8TF72 HHEX-202ENST00000472590 1605 ntTSL 2 BASIC15.28■□□□□ 0.04
SHROOM3Q8TF72 RHD-204ENST00000417538 1333 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
SHROOM3Q8TF72 ADAM15-201ENST00000271836 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
SHROOM3Q8TF72 CXorf40A-209ENST00000441248 2411 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
SHROOM3Q8TF72 RHCE-205ENST00000349438 1235 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 46.8 ms