Protein–RNA interactions for Protein: Q6P9A3

ZNF549, Zinc finger protein 549, humanhuman

Predictions only

Length 640 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF549Q6P9A3 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC14.97□□□□□ -0.01
ZNF549Q6P9A3 SV2A-201ENST00000369145 2903 ntTSL 2 BASIC14.97□□□□□ -0.01
ZNF549Q6P9A3 CCDC140-201ENST00000295226 1699 ntAPPRIS P2 TSL 1 (best) BASIC14.97□□□□□ -0.01
ZNF549Q6P9A3 ITSN1-212ENST00000399367 5722 ntAPPRIS ALT1 TSL 1 (best) BASIC14.97□□□□□ -0.01
ZNF549Q6P9A3 CA12-202ENST00000344366 2744 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
ZNF549Q6P9A3 ARHGEF16-203ENST00000378378 3061 ntAPPRIS P1 TSL 2 BASIC14.97□□□□□ -0.01
ZNF549Q6P9A3 PATZ1-202ENST00000266269 3781 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
ZNF549Q6P9A3 ASPH-202ENST00000379449 1603 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
ZNF549Q6P9A3 FP565260.6-204ENST00000620528 1640 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
ZNF549Q6P9A3 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
ZNF549Q6P9A3 EEF1B2-201ENST00000236957 844 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
ZNF549Q6P9A3 NDUFA2-201ENST00000252102 804 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
ZNF549Q6P9A3 NSL1-201ENST00000366976 722 ntTSL 2 BASIC14.97□□□□□ -0.01
ZNF549Q6P9A3 C1orf43-205ENST00000368519 1163 ntTSL 2 BASIC14.97□□□□□ -0.01
ZNF549Q6P9A3 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
ZNF549Q6P9A3 MAGEA12-203ENST00000393900 1299 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
ZNF549Q6P9A3 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
ZNF549Q6P9A3 CR589904.1-201ENST00000437830 732 ntTSL 5 BASIC14.97□□□□□ -0.01
ZNF549Q6P9A3 AC190387.1-201ENST00000551683 408 ntBASIC14.97□□□□□ -0.01
ZNF549Q6P9A3 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC14.97□□□□□ -0.01
ZNF549Q6P9A3 PAM16-204ENST00000571941 674 ntTSL 3 BASIC14.97□□□□□ -0.01
ZNF549Q6P9A3 AC010327.1-201ENST00000587871 975 ntAPPRIS P1 TSL 5 BASIC14.97□□□□□ -0.01
ZNF549Q6P9A3 AC015819.2-201ENST00000618730 555 ntTSL 3 BASIC14.97□□□□□ -0.01
ZNF549Q6P9A3 EIF6-209ENST00000621148 1054 ntAPPRIS P1 TSL 3 BASIC14.97□□□□□ -0.01
ZNF549Q6P9A3 SLC38A10-202ENST00000374759 4300 ntAPPRIS ALT2 TSL 5 BASIC14.97□□□□□ -0.01
ZNF549Q6P9A3 SALL3-205ENST00000575389 3996 ntTSL 5 BASIC14.97□□□□□ -0.01
ZNF549Q6P9A3 AC022400.6-201ENST00000603027 5818 ntAPPRIS P5 TSL 2 BASIC14.97□□□□□ -0.01
ZNF549Q6P9A3 GSG1L-203ENST00000447459 4916 ntAPPRIS P3 TSL 2 BASIC14.97□□□□□ -0.01
ZNF549Q6P9A3 MROH1-207ENST00000528919 5234 ntAPPRIS P3 TSL 1 (best) BASIC14.97□□□□□ -0.01
ZNF549Q6P9A3 CYP51A1-201ENST00000003100 3210 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
ZNF549Q6P9A3 ST3GAL3-208ENST00000361392 2243 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
ZNF549Q6P9A3 MSI2-202ENST00000322684 1860 ntAPPRIS ALT2 TSL 2 BASIC14.97□□□□□ -0.01
ZNF549Q6P9A3 CBX3-202ENST00000396386 1857 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
ZNF549Q6P9A3 CCT4-201ENST00000394440 2520 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
ZNF549Q6P9A3 DTX3-202ENST00000548198 3199 ntAPPRIS P3 TSL 2 BASIC14.97□□□□□ -0.01
ZNF549Q6P9A3 COG3-201ENST00000349995 4498 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
ZNF549Q6P9A3 FGD5-206ENST00000543601 5768 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
ZNF549Q6P9A3 SLC35G3-201ENST00000297307 2004 ntAPPRIS P1 BASIC14.97□□□□□ -0.01
ZNF549Q6P9A3 CDK16-211ENST00000518022 2022 ntAPPRIS P1 TSL 2 BASIC14.97□□□□□ -0.01
ZNF549Q6P9A3 CCNY-201ENST00000265375 4768 ntAPPRIS ALT1 TSL 1 (best) BASIC14.97□□□□□ -0.01
ZNF549Q6P9A3 PUDP-202ENST00000412827 1376 ntTSL 2 BASIC14.97□□□□□ -0.01
ZNF549Q6P9A3 MFRP-201ENST00000360167 1663 ntTSL 2 BASIC14.97□□□□□ -0.01
ZNF549Q6P9A3 LINC00094-204ENST00000599836 1689 ntAPPRIS P5 BASIC14.97□□□□□ -0.01
ZNF549Q6P9A3 HNRNPR-212ENST00000606561 1837 ntTSL 2 BASIC14.96□□□□□ -0.01
ZNF549Q6P9A3 CHEK2-204ENST00000382580 1971 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.01
ZNF549Q6P9A3 RABL2A-206ENST00000409842 1979 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
ZNF549Q6P9A3 API5-203ENST00000455725 2257 ntTSL 2 BASIC14.96□□□□□ -0.01
ZNF549Q6P9A3 HOXB4-201ENST00000332503 3757 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
ZNF549Q6P9A3 ABHD16A-202ENST00000440843 1906 ntTSL 2 BASIC14.96□□□□□ -0.01
ZNF549Q6P9A3 AGTPBP1-208ENST00000628899 4222 ntTSL 2 BASIC14.96□□□□□ -0.01
ZNF549Q6P9A3 OPA1-203ENST00000361715 6384 ntTSL 5 BASIC14.96□□□□□ -0.01
ZNF549Q6P9A3 PIANP-202ENST00000534837 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.01
ZNF549Q6P9A3 LINC00924-202ENST00000556053 2682 ntTSL 2 BASIC14.96□□□□□ -0.01
ZNF549Q6P9A3 NMUR1-201ENST00000305141 3298 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
ZNF549Q6P9A3 XAF1-201ENST00000346752 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.01
ZNF549Q6P9A3 NEK2-201ENST00000366998 1865 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
ZNF549Q6P9A3 LCE3E-201ENST00000368789 611 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
ZNF549Q6P9A3 PGGT1B-202ENST00000379615 903 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
ZNF549Q6P9A3 FAM159B-201ENST00000389074 847 ntAPPRIS P1 TSL 2 BASIC14.96□□□□□ -0.01
ZNF549Q6P9A3 RAC2-203ENST00000405484 842 ntAPPRIS ALT1 TSL 3 BASIC14.96□□□□□ -0.01
ZNF549Q6P9A3 PIN1P1-201ENST00000412108 996 ntBASIC14.96□□□□□ -0.01
ZNF549Q6P9A3 CR769775.1-201ENST00000443347 931 ntTSL 3 BASIC14.96□□□□□ -0.01
ZNF549Q6P9A3 TRIM50-202ENST00000453152 1599 ntAPPRIS P1 TSL 2 BASIC14.96□□□□□ -0.01
ZNF549Q6P9A3 AC022616.1-201ENST00000518688 554 ntBASIC14.96□□□□□ -0.01
ZNF549Q6P9A3 AC006064.3-201ENST00000537921 477 ntTSL 4 BASIC14.96□□□□□ -0.01
ZNF549Q6P9A3 LAT-209ENST00000564277 921 ntAPPRIS ALT2 TSL 5 BASIC14.96□□□□□ -0.01
ZNF549Q6P9A3 TUBB6-203ENST00000586653 788 ntTSL 2 BASIC14.96□□□□□ -0.01
ZNF549Q6P9A3 AC008770.3-202ENST00000591944 567 ntTSL 4 BASIC14.96□□□□□ -0.01
ZNF549Q6P9A3 YTHDF3-AS1-201ENST00000603538 718 ntBASIC14.96□□□□□ -0.01
ZNF549Q6P9A3 KRTAP10-7-201ENST00000609664 1578 ntAPPRIS P1 BASIC14.96□□□□□ -0.01
ZNF549Q6P9A3 APOBEC3H-206ENST00000613677 730 ntAPPRIS ALT2 TSL 5 BASIC14.96□□□□□ -0.01
ZNF549Q6P9A3 USP10-201ENST00000219473 3009 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
ZNF549Q6P9A3 PAX6-202ENST00000379107 2579 ntAPPRIS P4 TSL 5 BASIC14.96□□□□□ -0.01
ZNF549Q6P9A3 UBE4B-201ENST00000253251 4772 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
ZNF549Q6P9A3 TNFAIP8L3-201ENST00000327536 2262 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
ZNF549Q6P9A3 LINC00839-202ENST00000429940 2253 ntTSL 2 BASIC14.96□□□□□ -0.01
ZNF549Q6P9A3 VCAN-211ENST00000513984 1825 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
ZNF549Q6P9A3 PFKFB4-201ENST00000232375 3586 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
ZNF549Q6P9A3 KIF1C-201ENST00000320785 7919 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
ZNF549Q6P9A3 AC004943.2-201ENST00000563328 4842 ntTSL 3 BASIC14.96□□□□□ -0.02
ZNF549Q6P9A3 GLG1-203ENST00000447066 3626 ntAPPRIS ALT2 TSL 2 BASIC14.96□□□□□ -0.02
ZNF549Q6P9A3 AC023632.2-201ENST00000523011 1789 ntTSL 2 BASIC14.96□□□□□ -0.02
ZNF549Q6P9A3 PMM2-201ENST00000268261 2313 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
ZNF549Q6P9A3 VEZF1-202ENST00000581208 2321 ntAPPRIS P3 TSL 1 (best) BASIC14.95□□□□□ -0.02
ZNF549Q6P9A3 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
ZNF549Q6P9A3 MAU2-201ENST00000262815 4994 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
ZNF549Q6P9A3 TTLL13P-202ENST00000438251 2738 ntAPPRIS P5 TSL 5 BASIC14.95□□□□□ -0.02
ZNF549Q6P9A3 AC006504.5-203ENST00000590628 1335 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
ZNF549Q6P9A3 DIP2A-201ENST00000400274 7023 ntAPPRIS ALT2 TSL 5 BASIC14.95□□□□□ -0.02
ZNF549Q6P9A3 HTR3A-205ENST00000504030 2432 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
ZNF549Q6P9A3 SELPLG-201ENST00000228463 1704 ntAPPRIS ALT2 TSL 2 BASIC14.95□□□□□ -0.02
ZNF549Q6P9A3 HMBOX1-210ENST00000523613 1730 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
ZNF549Q6P9A3 BCL10-201ENST00000370580 2819 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
ZNF549Q6P9A3 BCAR3-210ENST00000539242 2114 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
ZNF549Q6P9A3 FAM103A1-201ENST00000304191 1568 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
ZNF549Q6P9A3 CIAPIN1-213ENST00000569370 1559 ntTSL 3 BASIC14.95□□□□□ -0.02
ZNF549Q6P9A3 MAGED4B-202ENST00000360134 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
ZNF549Q6P9A3 MAGI1-201ENST00000330909 7415 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
ZNF549Q6P9A3 KHK-201ENST00000260598 2397 ntAPPRIS P5 TSL 2 BASIC14.95□□□□□ -0.02
ZNF549Q6P9A3 KIAA1468-202ENST00000398130 6178 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 46.2 ms