Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 TMEM38A-201ENST00000187762 2649 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CCDC144BQ3MJ40 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
CCDC144BQ3MJ40 RAB41-201ENST00000276066 1071 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
CCDC144BQ3MJ40 SH3BGR-201ENST00000333634 1251 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
CCDC144BQ3MJ40 MUC1-202ENST00000338684 1107 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CCDC144BQ3MJ40 RAB41-202ENST00000374473 1074 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
CCDC144BQ3MJ40 HIST1H2AH-201ENST00000377459 387 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
CCDC144BQ3MJ40 Z98752.1-201ENST00000442482 518 ntTSL 3 BASIC17.5■□□□□ 0.39
CCDC144BQ3MJ40 KRT8P13-201ENST00000463294 1010 ntBASIC17.5■□□□□ 0.39
CCDC144BQ3MJ40 MUC1-218ENST00000471283 635 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CCDC144BQ3MJ40 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC17.5■□□□□ 0.39
CCDC144BQ3MJ40 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC17.5■□□□□ 0.39
CCDC144BQ3MJ40 C1RL-212ENST00000545337 813 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CCDC144BQ3MJ40 AC009133.1-202ENST00000563806 494 ntTSL 3 BASIC17.5■□□□□ 0.39
CCDC144BQ3MJ40 HIRIP3-204ENST00000564026 988 ntTSL 2 BASIC17.5■□□□□ 0.39
CCDC144BQ3MJ40 HNRNPA1P48-202ENST00000565308 961 ntBASIC17.5■□□□□ 0.39
CCDC144BQ3MJ40 TSR1-204ENST00000576112 1290 ntTSL 5 BASIC17.5■□□□□ 0.39
CCDC144BQ3MJ40 UBL5-208ENST00000593087 320 ntTSL 3 BASIC17.5■□□□□ 0.39
CCDC144BQ3MJ40 BX539320.1-201ENST00000623759 877 ntBASIC17.5■□□□□ 0.39
CCDC144BQ3MJ40 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC17.5■□□□□ 0.39
CCDC144BQ3MJ40 MAGEA8-205ENST00000542674 2084 ntAPPRIS P1 TSL 3 BASIC17.5■□□□□ 0.39
CCDC144BQ3MJ40 WDR25-204ENST00000554175 2055 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CCDC144BQ3MJ40 TIGD4-201ENST00000304337 2472 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CCDC144BQ3MJ40 CICP14-201ENST00000629111 2732 ntBASIC17.5■□□□□ 0.39
CCDC144BQ3MJ40 HTR3A-202ENST00000355556 2331 ntTSL 2 BASIC17.5■□□□□ 0.39
CCDC144BQ3MJ40 MBD1-211ENST00000585595 2179 ntAPPRIS ALT2 TSL 2 BASIC17.5■□□□□ 0.39
CCDC144BQ3MJ40 ARHGAP9-213ENST00000550288 2818 ntTSL 2 BASIC17.5■□□□□ 0.39
CCDC144BQ3MJ40 PLEKHA4-201ENST00000263265 3088 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CCDC144BQ3MJ40 C3orf62-201ENST00000343010 4235 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
CCDC144BQ3MJ40 EIF4G1-202ENST00000346169 5516 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
CCDC144BQ3MJ40 APCDD1L-201ENST00000371149 3426 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
CCDC144BQ3MJ40 MAN1B1-202ENST00000371589 2769 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CCDC144BQ3MJ40 MANSC1-202ENST00000535902 5831 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CCDC144BQ3MJ40 PRSS30P-203ENST00000476276 2855 ntTSL 2 BASIC17.5■□□□□ 0.39
CCDC144BQ3MJ40 TNFSF13-201ENST00000338784 1971 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
CCDC144BQ3MJ40 NFE2L1-214ENST00000582155 1998 ntTSL 2 BASIC17.49■□□□□ 0.39
CCDC144BQ3MJ40 PSD-209ENST00000611678 3382 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
CCDC144BQ3MJ40 AHCYP2-201ENST00000430630 1300 ntBASIC17.49■□□□□ 0.39
CCDC144BQ3MJ40 KRT8P35-201ENST00000483942 1338 ntBASIC17.49■□□□□ 0.39
CCDC144BQ3MJ40 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
CCDC144BQ3MJ40 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
CCDC144BQ3MJ40 YPEL1-201ENST00000339468 4329 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CCDC144BQ3MJ40 ABR-228ENST00000574437 3196 ntTSL 5 BASIC17.49■□□□□ 0.39
CCDC144BQ3MJ40 NOP14-203ENST00000416614 3538 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
CCDC144BQ3MJ40 WASHC2C-202ENST00000359860 4471 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
CCDC144BQ3MJ40 APBB1-221ENST00000609360 2642 ntAPPRIS ALT1 TSL 5 BASIC17.49■□□□□ 0.39
CCDC144BQ3MJ40 RTKN-202ENST00000272430 2142 ntAPPRIS ALT1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CCDC144BQ3MJ40 RBPMS-201ENST00000287771 2974 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
CCDC144BQ3MJ40 C1orf123-201ENST00000294360 1085 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CCDC144BQ3MJ40 C3orf22-201ENST00000318225 1000 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CCDC144BQ3MJ40 PRDX5-203ENST00000352435 596 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
CCDC144BQ3MJ40 RAB4B-201ENST00000357052 1133 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CCDC144BQ3MJ40 TNFAIP8L2-201ENST00000368910 1178 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CCDC144BQ3MJ40 C17orf51-202ENST00000412778 877 ntAPPRIS ALT2 TSL 3 BASIC17.49■□□□□ 0.39
CCDC144BQ3MJ40 Z93015.1-201ENST00000451718 390 ntBASIC17.49■□□□□ 0.39
CCDC144BQ3MJ40 AL355102.5-201ENST00000554769 572 ntTSL 4 BASIC17.49■□□□□ 0.39
CCDC144BQ3MJ40 AC139099.3-201ENST00000572850 472 ntTSL 5 BASIC17.49■□□□□ 0.39
CCDC144BQ3MJ40 TBC1D16-205ENST00000572862 1141 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
CCDC144BQ3MJ40 AL121944.1-201ENST00000605945 686 ntTSL 2 BASIC17.49■□□□□ 0.39
CCDC144BQ3MJ40 AL160412.1-202ENST00000616819 663 ntTSL 4 BASIC17.49■□□□□ 0.39
CCDC144BQ3MJ40 CRHBP-201ENST00000274368 1980 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CCDC144BQ3MJ40 TEAD4-203ENST00000397122 1396 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
CCDC144BQ3MJ40 LHX6-207ENST00000541397 2942 ntTSL 2 BASIC17.49■□□□□ 0.39
CCDC144BQ3MJ40 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC17.49■□□□□ 0.39
CCDC144BQ3MJ40 ZNF84-201ENST00000327668 7162 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
CCDC144BQ3MJ40 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CCDC144BQ3MJ40 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CCDC144BQ3MJ40 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
CCDC144BQ3MJ40 SULT2B1-202ENST00000323090 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
CCDC144BQ3MJ40 SNAP47-203ENST00000366760 1446 ntAPPRIS ALT2 TSL 2 BASIC17.48■□□□□ 0.39
CCDC144BQ3MJ40 ANXA8L1-208ENST00000622769 1861 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
CCDC144BQ3MJ40 CKMT2-201ENST00000254035 1512 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CCDC144BQ3MJ40 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
CCDC144BQ3MJ40 ADAM33-206ENST00000617732 1971 ntTSL 5 BASIC17.48■□□□□ 0.39
CCDC144BQ3MJ40 SOGA3-201ENST00000465909 3756 ntTSL 5 BASIC17.48■□□□□ 0.39
CCDC144BQ3MJ40 NORAD-201ENST00000565493 5339 ntBASIC17.48■□□□□ 0.39
CCDC144BQ3MJ40 KCNS1-201ENST00000306117 4538 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CCDC144BQ3MJ40 SUPT20H-201ENST00000350612 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
CCDC144BQ3MJ40 PLA2G4B-202ENST00000458483 2734 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
CCDC144BQ3MJ40 AGER-203ENST00000375065 665 ntTSL 2 BASIC17.48■□□□□ 0.39
CCDC144BQ3MJ40 H2AFV-206ENST00000437072 589 ntTSL 4 BASIC17.48■□□□□ 0.39
CCDC144BQ3MJ40 AL590640.2-201ENST00000457038 527 ntBASIC17.48■□□□□ 0.39
CCDC144BQ3MJ40 CENPM-208ENST00000472374 541 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
CCDC144BQ3MJ40 HYAL3-206ENST00000513170 636 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
CCDC144BQ3MJ40 AC084859.1-201ENST00000533002 670 ntTSL 4 BASIC17.48■□□□□ 0.39
CCDC144BQ3MJ40 IL32-222ENST00000533097 814 ntAPPRIS P4 TSL 2 BASIC17.48■□□□□ 0.39
CCDC144BQ3MJ40 MIR4741-201ENST00000579822 90 ntBASIC17.48■□□□□ 0.39
CCDC144BQ3MJ40 AC011510.1-201ENST00000598541 286 ntTSL 3 BASIC17.48■□□□□ 0.39
CCDC144BQ3MJ40 AL022328.3-201ENST00000607943 679 ntBASIC17.48■□□□□ 0.39
CCDC144BQ3MJ40 PRKN-211ENST00000615065 261 ntTSL 5 BASIC17.48■□□□□ 0.39
CCDC144BQ3MJ40 IL32-201ENST00000008180 1056 ntAPPRIS ALT2 TSL 2 BASIC17.48■□□□□ 0.39
CCDC144BQ3MJ40 SEPT9-228ENST00000590294 2816 ntAPPRIS ALT2 TSL 5 BASIC17.48■□□□□ 0.39
CCDC144BQ3MJ40 CYP2U1-201ENST00000332884 4944 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CCDC144BQ3MJ40 AC009053.1-204ENST00000429810 2355 ntTSL 2 BASIC17.48■□□□□ 0.39
CCDC144BQ3MJ40 TOR4A-201ENST00000357503 4148 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
CCDC144BQ3MJ40 UHRF1-204ENST00000616255 2661 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CCDC144BQ3MJ40 SGCZ-201ENST00000382080 2234 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
CCDC144BQ3MJ40 SLC26A11-202ENST00000411502 2872 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
CCDC144BQ3MJ40 CANX-201ENST00000247461 4260 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CCDC144BQ3MJ40 MSI1-201ENST00000257552 2975 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 47.3 ms