Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 ZNF30-202ENST00000439785 2651 ntAPPRIS P4 TSL 5 BASIC16.19■□□□□ 0.18
VCPP55072 SLC22A6-204ENST00000458333 1521 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
VCPP55072 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
VCPP55072 ABCB8-221ENST00000498578 2350 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
VCPP55072 STAT5A-211ENST00000590949 3318 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
VCPP55072 ZNF586-201ENST00000391702 2265 ntTSL 2 BASIC16.19■□□□□ 0.18
VCPP55072 USH1C-207ENST00000527720 2278 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
VCPP55072 CRHR2-208ENST00000506074 3109 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
VCPP55072 KCNG4-202ENST00000568181 2199 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
VCPP55072 RER1-203ENST00000378513 3000 ntTSL 3 BASIC16.19■□□□□ 0.18
VCPP55072 CRHBP-201ENST00000274368 1980 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
VCPP55072 CNGB1-201ENST00000251102 5641 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
VCPP55072 USE1-206ENST00000595101 1776 ntTSL 2 BASIC16.18■□□□□ 0.18
VCPP55072 BPTF-202ENST00000321892 11292 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
VCPP55072 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
VCPP55072 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
VCPP55072 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
VCPP55072 MIIP-201ENST00000235332 1573 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
VCPP55072 NDRG2-202ENST00000298687 2122 ntAPPRIS P4 TSL 1 (best) BASIC16.18■□□□□ 0.18
VCPP55072 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC16.18■□□□□ 0.18
VCPP55072 NTMT1-204ENST00000372486 1487 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
VCPP55072 WASHC2C-208ENST00000537517 4417 ntAPPRIS ALT2 TSL 2 BASIC16.18■□□□□ 0.18
VCPP55072 KCNG3-202ENST00000394973 3656 ntAPPRIS ALT1 TSL 1 (best) BASIC16.18■□□□□ 0.18
VCPP55072 CAPN2-201ENST00000295006 3573 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
VCPP55072 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
VCPP55072 ACTL7B-201ENST00000374667 2379 ntAPPRIS P1 BASIC16.18■□□□□ 0.18
VCPP55072 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
VCPP55072 NAT8-201ENST00000272425 947 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
VCPP55072 CABP1-203ENST00000351200 770 ntAPPRIS ALT1 TSL 1 (best) BASIC16.18■□□□□ 0.18
VCPP55072 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
VCPP55072 BEX2-201ENST00000372674 668 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
VCPP55072 AC004898.1-201ENST00000451057 766 ntBASIC16.18■□□□□ 0.18
VCPP55072 AC093433.1-201ENST00000458048 571 ntBASIC16.18■□□□□ 0.18
VCPP55072 VDAC1P7-201ENST00000462417 847 ntBASIC16.18■□□□□ 0.18
VCPP55072 TSACC-208ENST00000481479 741 ntTSL 2 BASIC16.18■□□□□ 0.18
VCPP55072 VASH1-AS1-201ENST00000554058 871 ntTSL 3 BASIC16.18■□□□□ 0.18
VCPP55072 CMC2-214ENST00000565925 640 ntTSL 5 BASIC16.18■□□□□ 0.18
VCPP55072 MIR4741-201ENST00000579822 90 ntBASIC16.18■□□□□ 0.18
VCPP55072 GNRHR2-203ENST00000581100 1187 ntBASIC16.18■□□□□ 0.18
VCPP55072 FBXL12-212ENST00000592067 879 ntTSL 2 BASIC16.18■□□□□ 0.18
VCPP55072 AC138627.1-207ENST00000641560 1006 ntBASIC16.18■□□□□ 0.18
VCPP55072 AC013726.1-201ENST00000563747 2285 ntBASIC16.18■□□□□ 0.18
VCPP55072 ASIC4-202ENST00000358078 2741 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
VCPP55072 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC16.18■□□□□ 0.18
VCPP55072 SHROOM1-201ENST00000319854 3190 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
VCPP55072 CALD1-222ENST00000495522 2199 ntTSL 5 BASIC16.18■□□□□ 0.18
VCPP55072 KAT5-202ENST00000352980 2059 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
VCPP55072 ZBTB32-202ENST00000392197 2068 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
VCPP55072 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC16.18■□□□□ 0.18
VCPP55072 ARHGAP39-201ENST00000276826 4697 ntAPPRIS ALT2 TSL 2 BASIC16.18■□□□□ 0.18
VCPP55072 TMEM117-201ENST00000266534 2758 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
VCPP55072 ALG9-201ENST00000398006 2345 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
VCPP55072 GSN-203ENST00000373808 2664 ntTSL 2 BASIC16.18■□□□□ 0.18
VCPP55072 CDH20-203ENST00000538374 2683 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
VCPP55072 DCUN1D4-203ENST00000451288 4269 ntTSL 2 BASIC16.18■□□□□ 0.18
VCPP55072 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
VCPP55072 SATB2-205ENST00000443023 6194 ntTSL 5 BASIC16.18■□□□□ 0.18
VCPP55072 RAPSN-201ENST00000298854 1671 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
VCPP55072 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
VCPP55072 ANOS1-201ENST00000262648 6314 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
VCPP55072 GTF2A1L-203ENST00000430487 1575 ntTSL 2 BASIC16.17■□□□□ 0.18
VCPP55072 AC084364.1-201ENST00000551967 1556 ntBASIC16.17■□□□□ 0.18
VCPP55072 GGT6-201ENST00000301395 2534 ntTSL 2 BASIC16.17■□□□□ 0.18
VCPP55072 PAK4-205ENST00000593690 3025 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
VCPP55072 MED15-202ENST00000292733 3252 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
VCPP55072 ZNF815P-201ENST00000421890 1352 ntTSL 2 BASIC16.17■□□□□ 0.18
VCPP55072 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
VCPP55072 CLDN22-201ENST00000323319 2581 ntAPPRIS P1 BASIC16.17■□□□□ 0.18
VCPP55072 NBEA-203ENST00000379939 10738 ntAPPRIS ALT1 TSL 5 BASIC16.17■□□□□ 0.18
VCPP55072 PIK3R1-211ENST00000521381 7011 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
VCPP55072 AC106881.1-201ENST00000605849 3329 ntBASIC16.17■□□□□ 0.18
VCPP55072 LRRC6-213ENST00000620350 1878 ntAPPRIS P2 TSL 1 (best) BASIC16.17■□□□□ 0.18
VCPP55072 PCDHB8-201ENST00000239444 2740 ntAPPRIS P1 BASIC16.17■□□□□ 0.18
VCPP55072 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
VCPP55072 C8orf74-201ENST00000304519 1036 ntAPPRIS P2 TSL 1 (best) BASIC16.17■□□□□ 0.18
VCPP55072 VSIG2-201ENST00000326621 1148 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
VCPP55072 SCGN-201ENST00000334979 704 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
VCPP55072 PHF8-203ENST00000338946 4651 ntAPPRIS ALT2 TSL 2 BASIC16.17■□□□□ 0.18
VCPP55072 RHCE-202ENST00000340849 1087 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
VCPP55072 PIP5K1A-202ENST00000368888 2134 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
VCPP55072 TREM2-203ENST00000373122 1012 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
VCPP55072 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC16.17■□□□□ 0.18
VCPP55072 RPL17P11-201ENST00000417593 544 ntBASIC16.17■□□□□ 0.18
VCPP55072 LINC01694-201ENST00000424569 821 ntTSL 5 BASIC16.17■□□□□ 0.18
VCPP55072 AL157902.1-202ENST00000425010 763 ntTSL 3 BASIC16.17■□□□□ 0.18
VCPP55072 DLGAP4-AS1-202ENST00000433238 593 ntTSL 3 BASIC16.17■□□□□ 0.18
VCPP55072 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
VCPP55072 PTPA-217ENST00000434095 870 ntTSL 2 BASIC16.17■□□□□ 0.18
VCPP55072 LINC02028-203ENST00000443776 453 ntTSL 3 BASIC16.17■□□□□ 0.18
VCPP55072 KRT18P43-201ENST00000469825 1281 ntBASIC16.17■□□□□ 0.18
VCPP55072 CCDC153-204ENST00000503566 1295 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
VCPP55072 AC006487.1-201ENST00000514506 1221 ntTSL 2 BASIC16.17■□□□□ 0.18
VCPP55072 NAALADL1-208ENST00000528884 973 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
VCPP55072 SSTR5-AS1-201ENST00000565992 575 ntTSL 4 BASIC16.17■□□□□ 0.18
VCPP55072 AC105105.3-201ENST00000585470 646 ntTSL 5 BASIC16.17■□□□□ 0.18
VCPP55072 PCDHGC3-204ENST00000617222 731 ntTSL 3 BASIC16.17■□□□□ 0.18
VCPP55072 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC16.17■□□□□ 0.18
VCPP55072 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
VCPP55072 EIF4G1-209ENST00000414031 5569 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
VCPP55072 RCSD1-206ENST00000537350 3044 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 62.8 ms