Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 AC004461.2-201ENST00000629517 803 ntBASIC11.56□□□□□ -0.56
HLA-DMBP28068 CD93-201ENST00000246006 6708 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
HLA-DMBP28068 AC126335.2-201ENST00000623362 4637 ntBASIC11.56□□□□□ -0.56
HLA-DMBP28068 CICP4-201ENST00000447359 2812 ntBASIC11.56□□□□□ -0.56
HLA-DMBP28068 CDCA7-202ENST00000347703 2500 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
HLA-DMBP28068 SCFD2-201ENST00000388940 2221 ntTSL 2 BASIC11.56□□□□□ -0.56
HLA-DMBP28068 PDGFRL-201ENST00000251630 1901 ntAPPRIS P1 TSL 5 BASIC11.56□□□□□ -0.56
HLA-DMBP28068 UPB1-202ENST00000382760 1928 ntTSL 5 BASIC11.56□□□□□ -0.56
HLA-DMBP28068 FAM219A-209ENST00000445726 3644 ntAPPRIS ALT1 TSL 2 BASIC11.56□□□□□ -0.56
HLA-DMBP28068 NKIRAS1-203ENST00000415901 1644 ntAPPRIS ALT1 TSL 5 BASIC11.56□□□□□ -0.56
HLA-DMBP28068 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC11.56□□□□□ -0.56
HLA-DMBP28068 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC11.56□□□□□ -0.56
HLA-DMBP28068 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC11.56□□□□□ -0.56
HLA-DMBP28068 PLA2G4B-202ENST00000458483 2734 ntAPPRIS P1 TSL 2 BASIC11.56□□□□□ -0.56
HLA-DMBP28068 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
HLA-DMBP28068 BIRC5-203ENST00000374948 2446 ntTSL 1 (best) BASIC11.56□□□□□ -0.56
HLA-DMBP28068 VSIG10L-201ENST00000335624 3397 ntAPPRIS P1 TSL 5 BASIC11.56□□□□□ -0.56
HLA-DMBP28068 SFXN3-202ENST00000393459 3098 ntAPPRIS P1 TSL 5 BASIC11.56□□□□□ -0.56
HLA-DMBP28068 EXTL1-201ENST00000374280 4015 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
HLA-DMBP28068 CNNM2-203ENST00000433628 3857 ntAPPRIS ALT1 TSL 2 BASIC11.56□□□□□ -0.56
HLA-DMBP28068 ZNF655-212ENST00000424881 4666 ntAPPRIS ALT2 TSL 2 BASIC11.56□□□□□ -0.56
HLA-DMBP28068 NLRX1-204ENST00000409991 3716 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
HLA-DMBP28068 TRIM65-201ENST00000269383 3439 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
HLA-DMBP28068 SETD6-203ENST00000394266 3423 ntTSL 5 BASIC11.56□□□□□ -0.56
HLA-DMBP28068 MLLT11-201ENST00000368921 4075 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
HLA-DMBP28068 FOXD4L5-201ENST00000377420 3109 ntAPPRIS P1 BASIC11.55□□□□□ -0.56
HLA-DMBP28068 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
HLA-DMBP28068 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC11.55□□□□□ -0.56
HLA-DMBP28068 TSC2-203ENST00000382538 5264 ntAPPRIS ALT2 TSL 2 BASIC11.55□□□□□ -0.56
HLA-DMBP28068 KIF1BP-214ENST00000638119 2537 ntTSL 5 BASIC11.55□□□□□ -0.56
HLA-DMBP28068 OSBPL3-201ENST00000313367 6760 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
HLA-DMBP28068 AC148477.2-201ENST00000537762 3039 ntTSL 3 BASIC11.55□□□□□ -0.56
HLA-DMBP28068 ADAR-202ENST00000368474 6625 ntAPPRIS P3 TSL 1 (best) BASIC11.55□□□□□ -0.56
HLA-DMBP28068 HNF4G-201ENST00000354370 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC11.55□□□□□ -0.56
HLA-DMBP28068 GHRLOS-201ENST00000439539 1708 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
HLA-DMBP28068 LRRFIP1-204ENST00000392000 3365 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
HLA-DMBP28068 PIGT-202ENST00000279036 2245 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
HLA-DMBP28068 AL365205.1-204ENST00000359201 2098 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
HLA-DMBP28068 RGS9-202ENST00000443584 2078 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
HLA-DMBP28068 ALDOA-203ENST00000395248 2447 ntTSL 5 BASIC11.55□□□□□ -0.56
HLA-DMBP28068 CCNF-202ENST00000397066 4283 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
HLA-DMBP28068 NDC1-201ENST00000371429 5134 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
HLA-DMBP28068 FANCG-201ENST00000378643 2631 ntAPPRIS P2 TSL 1 (best) BASIC11.55□□□□□ -0.56
HLA-DMBP28068 RAPGEF1-202ENST00000372190 6045 ntAPPRIS P4 TSL 1 (best) BASIC11.55□□□□□ -0.56
HLA-DMBP28068 RBX1-201ENST00000216225 1188 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
HLA-DMBP28068 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
HLA-DMBP28068 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
HLA-DMBP28068 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
HLA-DMBP28068 AL589987.1-201ENST00000453380 819 ntBASIC11.55□□□□□ -0.56
HLA-DMBP28068 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC11.55□□□□□ -0.56
HLA-DMBP28068 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC11.55□□□□□ -0.56
HLA-DMBP28068 AC004890.2-204ENST00000481968 304 ntBASIC11.55□□□□□ -0.56
HLA-DMBP28068 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC11.55□□□□□ -0.56
HLA-DMBP28068 PNOC-204ENST00000522209 1007 ntTSL 2 BASIC11.55□□□□□ -0.56
HLA-DMBP28068 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
HLA-DMBP28068 IL32-211ENST00000525643 1272 ntAPPRIS P4 TSL 1 (best) BASIC11.55□□□□□ -0.56
HLA-DMBP28068 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC11.55□□□□□ -0.56
HLA-DMBP28068 IL32-213ENST00000528163 950 ntAPPRIS P4 TSL 2 BASIC11.55□□□□□ -0.56
HLA-DMBP28068 POLD4-211ENST00000539074 714 ntTSL 3 BASIC11.55□□□□□ -0.56
HLA-DMBP28068 IL32-231ENST00000551513 791 ntAPPRIS ALT2 TSL 3 BASIC11.55□□□□□ -0.56
HLA-DMBP28068 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
HLA-DMBP28068 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC11.55□□□□□ -0.56
HLA-DMBP28068 LINC02560-201ENST00000596379 459 ntBASIC11.55□□□□□ -0.56
HLA-DMBP28068 DKFZP434A062-201ENST00000573103 5021 ntBASIC11.55□□□□□ -0.56
HLA-DMBP28068 FP565260.6-204ENST00000620528 1640 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
HLA-DMBP28068 SLC4A7-212ENST00000446700 4000 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
HLA-DMBP28068 SOAT1-203ENST00000539888 6794 ntTSL 2 BASIC11.55□□□□□ -0.56
HLA-DMBP28068 SYNPO2L-202ENST00000394810 4921 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
HLA-DMBP28068 TLL1-206ENST00000513213 1829 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
HLA-DMBP28068 TRMT1-201ENST00000221504 2179 ntAPPRIS ALT2 TSL 1 (best) BASIC11.55□□□□□ -0.56
HLA-DMBP28068 RSPH9-201ENST00000372163 2534 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
HLA-DMBP28068 TMPRSS2-202ENST00000398585 3240 ntTSL 2 BASIC11.55□□□□□ -0.56
HLA-DMBP28068 TRPM1-203ENST00000542188 6004 ntAPPRIS ALT2 TSL 1 (best) BASIC11.55□□□□□ -0.56
HLA-DMBP28068 FHDC1-202ENST00000511601 6583 ntAPPRIS P1 TSL 5 BASIC11.55□□□□□ -0.56
HLA-DMBP28068 MKS1-202ENST00000393119 2397 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
HLA-DMBP28068 MAGEA2-209ENST00000623806 2025 ntAPPRIS P1 TSL 2 BASIC11.55□□□□□ -0.56
HLA-DMBP28068 CHRDL1-204ENST00000444321 1658 ntAPPRIS ALT1 TSL 1 (best) BASIC11.55□□□□□ -0.56
HLA-DMBP28068 AC087499.5-201ENST00000452760 1342 ntBASIC11.55□□□□□ -0.56
HLA-DMBP28068 RAD51C-215ENST00000583539 1319 ntAPPRIS ALT2 TSL 2 BASIC11.55□□□□□ -0.56
HLA-DMBP28068 AMACR-203ENST00000382072 2919 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
HLA-DMBP28068 ST7L-202ENST00000358039 4528 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
HLA-DMBP28068 COQ7-209ENST00000569127 2575 ntTSL 2 BASIC11.55□□□□□ -0.56
HLA-DMBP28068 ACSL1-201ENST00000281455 3832 ntAPPRIS P3 TSL 1 (best) BASIC11.55□□□□□ -0.56
HLA-DMBP28068 CYP26A1-202ENST00000371531 2245 ntTSL 2 BASIC11.55□□□□□ -0.56
HLA-DMBP28068 TNIP1-214ENST00000522226 2238 ntAPPRIS P3 TSL 2 BASIC11.55□□□□□ -0.56
HLA-DMBP28068 SPECC1-202ENST00000395522 2982 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
HLA-DMBP28068 WNT7B-201ENST00000339464 3919 ntAPPRIS P2 TSL 1 (best) BASIC11.54□□□□□ -0.56
HLA-DMBP28068 CLCNKA-201ENST00000331433 2475 ntAPPRIS P3 TSL 1 (best) BASIC11.54□□□□□ -0.56
HLA-DMBP28068 NDOR1-202ENST00000371521 2497 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
HLA-DMBP28068 PITX2-205ENST00000394598 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC11.54□□□□□ -0.56
HLA-DMBP28068 IL17RA-204ENST00000612619 8506 ntAPPRIS ALT2 TSL 5 BASIC11.54□□□□□ -0.56
HLA-DMBP28068 AC067750.1-201ENST00000608826 6545 ntBASIC11.54□□□□□ -0.56
HLA-DMBP28068 MLXIPL-203ENST00000354613 3215 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
HLA-DMBP28068 PDP1-203ENST00000517764 2140 ntAPPRIS P3 TSL 2 BASIC11.54□□□□□ -0.56
HLA-DMBP28068 ATP6V1C2-201ENST00000272238 1565 ntTSL 5 BASIC11.54□□□□□ -0.56
HLA-DMBP28068 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
HLA-DMBP28068 BCAT2-201ENST00000316273 1552 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
HLA-DMBP28068 NDUFC2-201ENST00000281031 2518 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
HLA-DMBP28068 PXYLP1-201ENST00000286353 3281 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
HLA-DMBP28068 GRIK5-201ENST00000262895 3493 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Retrieved 100 of 98,524 protein–RNA pairs in 34.6 ms