Protein–RNA interactions for Protein: P25942

CD40, Tumor necrosis factor receptor superfamily member 5, humanhuman

Predictions only

Length 277 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CD40P25942 LETMD1-206ENST00000547008 1665 ntTSL 2 BASIC12.97□□□□□ -0.33
CD40P25942 TUB-AS1-201ENST00000506601 2021 ntTSL 2 BASIC12.97□□□□□ -0.33
CD40P25942 ACOX3-202ENST00000413009 2374 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
CD40P25942 CLRN1-203ENST00000328863 738 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
CD40P25942 TREML1-201ENST00000373127 1194 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
CD40P25942 NQO2-202ENST00000380430 1098 ntAPPRIS P1 TSL 5 BASIC12.97□□□□□ -0.33
CD40P25942 RN7SKP175-201ENST00000408472 289 ntBASIC12.97□□□□□ -0.33
CD40P25942 LIMS4-201ENST00000413601 1215 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
CD40P25942 NREP-204ENST00000419114 704 ntAPPRIS P1 TSL 2 BASIC12.97□□□□□ -0.33
CD40P25942 HSPB1P2-201ENST00000448722 546 ntBASIC12.97□□□□□ -0.33
CD40P25942 HIST2H2BB-201ENST00000449108 381 ntBASIC12.97□□□□□ -0.33
CD40P25942 MAATS1-203ENST00000463700 939 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
CD40P25942 APOA2-204ENST00000464492 530 ntTSL 3 BASIC12.97□□□□□ -0.33
CD40P25942 AC138123.2-203ENST00000552451 653 ntTSL 3 BASIC12.97□□□□□ -0.33
CD40P25942 NIP7-208ENST00000569637 1099 ntTSL 2 BASIC12.97□□□□□ -0.33
CD40P25942 AC110285.3-201ENST00000574472 665 ntTSL 3 BASIC12.97□□□□□ -0.33
CD40P25942 AC011495.3-201ENST00000596472 427 ntTSL 2 BASIC12.97□□□□□ -0.33
CD40P25942 AC138696.2-201ENST00000607376 223 ntBASIC12.97□□□□□ -0.33
CD40P25942 MIR6787-201ENST00000616675 61 ntBASIC12.97□□□□□ -0.33
CD40P25942 CICP6-201ENST00000457191 2729 ntBASIC12.97□□□□□ -0.33
CD40P25942 B3GAT1-201ENST00000312527 3652 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
CD40P25942 BRF1-203ENST00000379937 3314 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
CD40P25942 SEC63-201ENST00000369002 6411 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
CD40P25942 INTS14-204ENST00000442903 1863 ntTSL 2 BASIC12.97□□□□□ -0.33
CD40P25942 NKPD1-201ENST00000317951 4233 ntAPPRIS P1 TSL 2 BASIC12.97□□□□□ -0.33
CD40P25942 MBD1-205ENST00000353909 2820 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
CD40P25942 FAM109A-203ENST00000547838 2846 ntAPPRIS P3 TSL 4 BASIC12.97□□□□□ -0.33
CD40P25942 HDHD3-201ENST00000238379 1834 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
CD40P25942 MARCH4-201ENST00000273067 4447 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
CD40P25942 MEF2C-AS1-210ENST00000514011 1754 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
CD40P25942 EPB41L3-202ENST00000342933 4270 ntAPPRIS ALT2 TSL 5 BASIC12.96□□□□□ -0.33
CD40P25942 LINC00900-201ENST00000499809 3322 ntTSL 2 BASIC12.96□□□□□ -0.33
CD40P25942 CBX3-203ENST00000409747 1717 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
CD40P25942 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC12.96□□□□□ -0.33
CD40P25942 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
CD40P25942 SEMA4F-210ENST00000611975 6007 ntTSL 5 BASIC12.96□□□□□ -0.33
CD40P25942 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC12.96□□□□□ -0.33
CD40P25942 HSFX2-201ENST00000598963 1365 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
CD40P25942 NF2-205ENST00000361452 5884 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
CD40P25942 NUP98-201ENST00000324932 6973 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
CD40P25942 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
CD40P25942 ZNF32-AS3-201ENST00000458063 1932 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
CD40P25942 SPIN2A-201ENST00000374906 1319 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
CD40P25942 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC12.96□□□□□ -0.33
CD40P25942 GUCD1-206ENST00000435822 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC12.96□□□□□ -0.33
CD40P25942 DAAM2-211ENST00000633794 3871 ntTSL 5 BASIC12.96□□□□□ -0.33
CD40P25942 FZD5-201ENST00000295417 6708 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
CD40P25942 PI4KAP1-201ENST00000610959 2425 ntTSL 2 BASIC12.96□□□□□ -0.33
CD40P25942 CELP-203ENST00000624767 2414 ntTSL 5 BASIC12.96□□□□□ -0.33
CD40P25942 C11orf52-201ENST00000278601 1141 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
CD40P25942 C1orf123-201ENST00000294360 1085 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
CD40P25942 CTHRC1-201ENST00000330295 1271 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
CD40P25942 MBD1-203ENST00000339998 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.33
CD40P25942 MIR663B-201ENST00000408361 115 ntBASIC12.96□□□□□ -0.33
CD40P25942 LINC01762-204ENST00000434879 436 ntTSL 2 BASIC12.96□□□□□ -0.33
CD40P25942 Z98752.1-201ENST00000442482 518 ntTSL 3 BASIC12.96□□□□□ -0.33
CD40P25942 AC099548.2-209ENST00000480264 625 ntBASIC12.96□□□□□ -0.33
CD40P25942 GDNF-AS1-201ENST00000503382 604 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
CD40P25942 CDC23-208ENST00000505120 455 ntTSL 3 BASIC12.96□□□□□ -0.33
CD40P25942 AP002748.3-205ENST00000525142 567 ntTSL 3 BASIC12.96□□□□□ -0.33
CD40P25942 AP002748.3-203ENST00000533502 581 ntTSL 3 BASIC12.96□□□□□ -0.33
CD40P25942 RNF41-210ENST00000552244 716 ntTSL 3 BASIC12.96□□□□□ -0.33
CD40P25942 RPL28-208ENST00000559463 852 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
CD40P25942 AP005329.1-201ENST00000578800 1035 ntTSL 2 BASIC12.96□□□□□ -0.33
CD40P25942 AP000229.1-202ENST00000609365 559 ntTSL 4 BASIC12.96□□□□□ -0.33
CD40P25942 AC244093.1-201ENST00000610837 814 ntBASIC12.96□□□□□ -0.33
CD40P25942 AP001002.3-201ENST00000623482 206 ntBASIC12.96□□□□□ -0.33
CD40P25942 AL008638.5-201ENST00000623814 1298 ntBASIC12.96□□□□□ -0.33
CD40P25942 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC12.96□□□□□ -0.33
CD40P25942 CEP70-213ENST00000489254 1811 ntAPPRIS ALT2 TSL 2 BASIC12.96□□□□□ -0.33
CD40P25942 RASGEF1A-204ENST00000395810 3235 ntAPPRIS P3 TSL 1 (best) BASIC12.96□□□□□ -0.33
CD40P25942 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
CD40P25942 MEGF10-206ENST00000508365 2365 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
CD40P25942 TMEM40-204ENST00000435218 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.33
CD40P25942 AC011840.2-201ENST00000563063 1520 ntBASIC12.96□□□□□ -0.33
CD40P25942 KAT5-202ENST00000352980 2059 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
CD40P25942 DENND1B-211ENST00000620048 8378 ntAPPRIS ALT2 TSL 5 BASIC12.96□□□□□ -0.33
CD40P25942 GATA4-201ENST00000335135 3414 ntAPPRIS P3 TSL 5 BASIC12.96□□□□□ -0.33
CD40P25942 ITGB4-206ENST00000579662 5554 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.34
CD40P25942 FGD5-206ENST00000543601 5768 ntTSL 1 (best) BASIC12.96□□□□□ -0.34
CD40P25942 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC12.96□□□□□ -0.34
CD40P25942 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
CD40P25942 HMBOX1-210ENST00000523613 1730 ntTSL 1 (best) BASIC12.96□□□□□ -0.34
CD40P25942 AC245123.1-202ENST00000612422 1719 ntTSL 5 BASIC12.96□□□□□ -0.34
CD40P25942 ADHFE1-203ENST00000396623 1990 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
CD40P25942 SYT13-201ENST00000020926 5144 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
CD40P25942 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC12.96□□□□□ -0.34
CD40P25942 NRBP1-201ENST00000233557 2887 ntAPPRIS P1 TSL 2 BASIC12.95□□□□□ -0.34
CD40P25942 PLD3-204ENST00000409281 2115 ntAPPRIS P1 TSL 2 BASIC12.95□□□□□ -0.34
CD40P25942 ANKMY2-201ENST00000306999 2555 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
CD40P25942 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
CD40P25942 DCUN1D4-203ENST00000451288 4269 ntTSL 2 BASIC12.95□□□□□ -0.34
CD40P25942 KLHL33-203ENST00000637228 5404 ntTSL 5 BASIC12.95□□□□□ -0.34
CD40P25942 GRN-222ENST00000639447 1314 ntTSL 2 BASIC12.95□□□□□ -0.34
CD40P25942 IER5-201ENST00000367577 4188 ntAPPRIS P1 BASIC12.95□□□□□ -0.34
CD40P25942 PYROXD2-201ENST00000370575 2028 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
CD40P25942 PITPNB-202ENST00000335272 2926 ntAPPRIS P3 TSL 1 (best) BASIC12.95□□□□□ -0.34
CD40P25942 SLC4A3-202ENST00000317151 4069 ntAPPRIS P1 TSL 5 BASIC12.95□□□□□ -0.34
CD40P25942 RABL2A-206ENST00000409842 1979 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
CD40P25942 USP47-207ENST00000527733 4525 ntAPPRIS P3 TSL 1 (best) BASIC12.95□□□□□ -0.34
Retrieved 100 of 98,524 protein–RNA pairs in 63.9 ms