Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 AC078785.1-203ENST00000467342 573 ntTSL 4 BASIC14.36□□□□□ -0.11
SDC1P18827 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC14.36□□□□□ -0.11
SDC1P18827 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
SDC1P18827 AC104596.2-201ENST00000512793 793 ntBASIC14.36□□□□□ -0.11
SDC1P18827 CCKBR-204ENST00000531712 463 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
SDC1P18827 LINC01089-209ENST00000542933 1220 ntTSL 3 BASIC14.36□□□□□ -0.11
SDC1P18827 AP001033.1-201ENST00000584509 466 ntTSL 3 BASIC14.36□□□□□ -0.11
SDC1P18827 AURKB-214ENST00000585124 1227 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
SDC1P18827 AC093726.1-201ENST00000608064 963 ntBASIC14.36□□□□□ -0.11
SDC1P18827 BARD1-209ENST00000613192 703 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
SDC1P18827 SMIM22-211ENST00000615889 1047 ntAPPRIS P4 TSL 5 BASIC14.36□□□□□ -0.11
SDC1P18827 TAMM41-212ENST00000630288 607 ntTSL 2 BASIC14.36□□□□□ -0.11
SDC1P18827 APBB1-219ENST00000608704 2095 ntTSL 5 BASIC14.36□□□□□ -0.11
SDC1P18827 FBLN2-203ENST00000404922 4318 ntAPPRIS P4 TSL 5 BASIC14.36□□□□□ -0.11
SDC1P18827 XRCC3-211ENST00000555055 2584 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
SDC1P18827 ASPH-202ENST00000379449 1603 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
SDC1P18827 C21orf58-202ENST00000397679 2900 ntAPPRIS ALT2 TSL 2 BASIC14.36□□□□□ -0.11
SDC1P18827 FAM122A-201ENST00000394264 4575 ntAPPRIS P1 BASIC14.36□□□□□ -0.11
SDC1P18827 A1BG-AS1-204ENST00000595302 2130 ntTSL 2 BASIC14.36□□□□□ -0.11
SDC1P18827 PEX26-205ENST00000610387 3924 ntTSL 5 BASIC14.36□□□□□ -0.11
SDC1P18827 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC14.36□□□□□ -0.11
SDC1P18827 FERMT3-201ENST00000279227 2489 ntAPPRIS P4 TSL 1 (best) BASIC14.36□□□□□ -0.11
SDC1P18827 FERMT3-202ENST00000345728 2481 ntAPPRIS ALT1 TSL 1 (best) BASIC14.36□□□□□ -0.11
SDC1P18827 SLC7A8-212ENST00000529705 1819 ntTSL 2 BASIC14.36□□□□□ -0.11
SDC1P18827 PNPLA3-201ENST00000216180 2805 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
SDC1P18827 POU6F1-208ENST00000550824 2664 ntTSL 5 BASIC14.36□□□□□ -0.11
SDC1P18827 IRAK4-212ENST00000551736 1684 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
SDC1P18827 PLAT-205ENST00000519510 2030 ntTSL 5 BASIC14.36□□□□□ -0.11
SDC1P18827 ITSN1-204ENST00000381285 6107 ntTSL 5 BASIC14.35□□□□□ -0.11
SDC1P18827 ZFR2-201ENST00000262961 4756 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
SDC1P18827 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
SDC1P18827 GALNTL6-205ENST00000511251 2905 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
SDC1P18827 HSPH1-201ENST00000320027 5191 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
SDC1P18827 OSBPL5-203ENST00000389989 3619 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
SDC1P18827 AC006504.5-208ENST00000588784 2401 ntBASIC14.35□□□□□ -0.11
SDC1P18827 PHLDA1-203ENST00000619060 5913 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
SDC1P18827 MYLK2-202ENST00000375994 2956 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
SDC1P18827 RPARP-AS1-202ENST00000492465 1556 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
SDC1P18827 ERLIN2-205ENST00000518586 2623 ntTSL 2 BASIC14.35□□□□□ -0.11
SDC1P18827 AC004706.4-201ENST00000634965 3537 ntAPPRIS P1 BASIC14.35□□□□□ -0.11
SDC1P18827 TMCO3-207ENST00000474393 2843 ntTSL 2 BASIC14.35□□□□□ -0.11
SDC1P18827 CDKN1A-208ENST00000615513 2102 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
SDC1P18827 MAMLD1-203ENST00000370401 4854 ntAPPRIS P3 TSL 5 BASIC14.35□□□□□ -0.11
SDC1P18827 CDKL3-206ENST00000521118 2160 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
SDC1P18827 CASC2-203ENST00000435944 3270 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
SDC1P18827 CMA1-201ENST00000206446 633 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
SDC1P18827 SLC18B1-202ENST00000367918 472 ntTSL 5 BASIC14.35□□□□□ -0.11
SDC1P18827 C1orf43-205ENST00000368519 1163 ntTSL 2 BASIC14.35□□□□□ -0.11
SDC1P18827 TAGLN-202ENST00000392951 928 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
SDC1P18827 C2orf15-202ENST00000409684 1058 ntAPPRIS P1 TSL 3 BASIC14.35□□□□□ -0.11
SDC1P18827 SPTLC1P1-201ENST00000447199 261 ntBASIC14.35□□□□□ -0.11
SDC1P18827 AC026434.2-201ENST00000506094 1078 ntBASIC14.35□□□□□ -0.11
SDC1P18827 NME2-207ENST00000514264 850 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
SDC1P18827 AC022616.1-201ENST00000518688 554 ntBASIC14.35□□□□□ -0.11
SDC1P18827 HDAC2-AS2-213ENST00000520891 603 ntTSL 4 BASIC14.35□□□□□ -0.11
SDC1P18827 AC084125.2-203ENST00000532766 821 ntTSL 3 BASIC14.35□□□□□ -0.11
SDC1P18827 AC091544.3-201ENST00000556424 531 ntTSL 2 BASIC14.35□□□□□ -0.11
SDC1P18827 AL359711.2-201ENST00000563105 872 ntBASIC14.35□□□□□ -0.11
SDC1P18827 IFT20-206ENST00000578122 834 ntTSL 2 BASIC14.35□□□□□ -0.11
SDC1P18827 IFT20-208ENST00000578985 831 ntTSL 3 BASIC14.35□□□□□ -0.11
SDC1P18827 AC124287.1-201ENST00000582249 838 ntTSL 3 BASIC14.35□□□□□ -0.11
SDC1P18827 SCP2-217ENST00000640998 1101 ntTSL 5 BASIC14.35□□□□□ -0.11
SDC1P18827 MFNG-202ENST00000416983 2034 ntTSL 2 BASIC14.35□□□□□ -0.11
SDC1P18827 NR4A1-213ENST00000550082 2029 ntTSL 5 BASIC14.35□□□□□ -0.11
SDC1P18827 AGER-206ENST00000375070 1463 ntTSL 5 BASIC14.35□□□□□ -0.11
SDC1P18827 AGER-208ENST00000438221 1493 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
SDC1P18827 TMCC2-202ENST00000330675 2780 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
SDC1P18827 CHFR-204ENST00000443047 2990 ntTSL 2 BASIC14.35□□□□□ -0.11
SDC1P18827 INHBE-201ENST00000266646 2429 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
SDC1P18827 CLCN1-201ENST00000343257 3172 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
SDC1P18827 AGGF1P1-201ENST00000509500 2073 ntBASIC14.35□□□□□ -0.11
SDC1P18827 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC14.35□□□□□ -0.11
SDC1P18827 GSG1L-203ENST00000447459 4916 ntAPPRIS P3 TSL 2 BASIC14.35□□□□□ -0.11
SDC1P18827 AC104452.1-203ENST00000636166 2266 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
SDC1P18827 ATL3-203ENST00000538786 1920 ntAPPRIS ALT2 TSL 2 BASIC14.35□□□□□ -0.11
SDC1P18827 ARMCX6-208ENST00000539247 1928 ntAPPRIS P1 TSL 4 BASIC14.35□□□□□ -0.11
SDC1P18827 NDUFC2-201ENST00000281031 2518 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
SDC1P18827 AC090099.1-203ENST00000527059 2945 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
SDC1P18827 ALDOA-209ENST00000563060 1550 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
SDC1P18827 MAN1B1-202ENST00000371589 2769 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
SDC1P18827 SLC35C1-201ENST00000314134 4171 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
SDC1P18827 LARGE1-201ENST00000354992 4409 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
SDC1P18827 KIAA0930-203ENST00000391627 2623 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
SDC1P18827 SHTN1-204ENST00000392903 2400 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
SDC1P18827 MLLT3-210ENST00000630269 2040 ntAPPRIS ALT1 TSL 2 BASIC14.34□□□□□ -0.11
SDC1P18827 NBEAL2-205ENST00000450053 8827 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
SDC1P18827 NDNF-201ENST00000379692 2885 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
SDC1P18827 AUTS2-218ENST00000615871 4511 ntTSL 5 BASIC14.34□□□□□ -0.11
SDC1P18827 IMPA1-201ENST00000256108 2690 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
SDC1P18827 TMEM237-202ENST00000409444 5592 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
SDC1P18827 LTBP3-221ENST00000532932 3327 ntTSL 2 BASIC14.34□□□□□ -0.11
SDC1P18827 LHX6-207ENST00000541397 2942 ntTSL 2 BASIC14.34□□□□□ -0.11
SDC1P18827 CCDC140-201ENST00000295226 1699 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
SDC1P18827 RNASEH2B-202ENST00000422660 4830 ntTSL 5 BASIC14.34□□□□□ -0.11
SDC1P18827 FAM120A-202ENST00000375389 3585 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
SDC1P18827 LINC00475-202ENST00000416438 2506 ntTSL 2 BASIC14.34□□□□□ -0.11
SDC1P18827 TSFM-201ENST00000323833 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
SDC1P18827 UBE2G2-201ENST00000330942 721 ntTSL 3 BASIC14.34□□□□□ -0.11
SDC1P18827 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
SDC1P18827 PKIG-202ENST00000372886 1180 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 41.8 ms