Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 AC020763.4-201ENST00000623414 4170 ntBASIC15.15■□□□□ 0.02
VCANP13611 AC231533.1-201ENST00000416061 925 ntTSL 3 BASIC15.15■□□□□ 0.02
VCANP13611 LINC01563-201ENST00000456235 750 ntTSL 2 BASIC15.15■□□□□ 0.02
VCANP13611 TAC3-209ENST00000458521 816 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
VCANP13611 AC097103.2-201ENST00000504670 602 ntTSL 2 BASIC15.15■□□□□ 0.02
VCANP13611 AC011383.1-201ENST00000517474 617 ntTSL 3 BASIC15.15■□□□□ 0.02
VCANP13611 AP000920.1-201ENST00000531824 344 ntBASIC15.15■□□□□ 0.02
VCANP13611 PIGH-209ENST00000559581 1049 ntTSL 4 BASIC15.15■□□□□ 0.02
VCANP13611 TMEM202-AS1-201ENST00000562573 723 ntTSL 3 BASIC15.15■□□□□ 0.02
VCANP13611 TAC3-211ENST00000615887 1120 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
VCANP13611 MAD2L1BP-202ENST00000451025 1517 ntTSL 2 BASIC15.14■□□□□ 0.02
VCANP13611 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
VCANP13611 KCNK4-TEX40-201ENST00000539086 2733 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
VCANP13611 ZNF846-201ENST00000397902 2016 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
VCANP13611 API5-202ENST00000420461 2009 ntTSL 2 BASIC15.14■□□□□ 0.01
VCANP13611 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC15.14■□□□□ 0.01
VCANP13611 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC15.14■□□□□ 0.01
VCANP13611 SEC13-209ENST00000397117 1603 ntTSL 5 BASIC15.14■□□□□ 0.01
VCANP13611 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC15.14■□□□□ 0.01
VCANP13611 MEG9-201ENST00000429368 2638 ntTSL 2 BASIC15.14■□□□□ 0.01
VCANP13611 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC15.14■□□□□ 0.01
VCANP13611 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
VCANP13611 REXO1L4P-201ENST00000605109 1937 ntBASIC15.14■□□□□ 0.01
VCANP13611 FCRL6-202ENST00000339348 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
VCANP13611 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC15.14■□□□□ 0.01
VCANP13611 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC15.14■□□□□ 0.01
VCANP13611 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC15.14■□□□□ 0.01
VCANP13611 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
VCANP13611 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC15.14■□□□□ 0.01
VCANP13611 SAPCD1-208ENST00000415669 916 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
VCANP13611 BX276092.5-201ENST00000439926 886 ntTSL 5 BASIC15.14■□□□□ 0.01
VCANP13611 AC074389.3-201ENST00000450458 454 ntTSL 3 BASIC15.14■□□□□ 0.01
VCANP13611 AC008026.2-201ENST00000495438 348 ntBASIC15.14■□□□□ 0.01
VCANP13611 CDC23-208ENST00000505120 455 ntTSL 3 BASIC15.14■□□□□ 0.01
VCANP13611 AC112220.4-201ENST00000604982 1263 ntBASIC15.14■□□□□ 0.01
VCANP13611 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC15.14■□□□□ 0.01
VCANP13611 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
VCANP13611 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
VCANP13611 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC15.14■□□□□ 0.01
VCANP13611 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
VCANP13611 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
VCANP13611 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
VCANP13611 CICP13-201ENST00000422015 2789 ntBASIC15.14■□□□□ 0.01
VCANP13611 CCL24-201ENST00000222902 582 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
VCANP13611 FAM86FP-201ENST00000338711 969 ntBASIC15.14■□□□□ 0.01
VCANP13611 GULP1-204ENST00000409637 1242 ntTSL 2 BASIC15.14■□□□□ 0.01
VCANP13611 WDYHV1-206ENST00000523356 869 ntTSL 3 BASIC15.14■□□□□ 0.01
VCANP13611 BMF-206ENST00000558774 671 ntTSL 3 BASIC15.14■□□□□ 0.01
VCANP13611 AL022334.2-201ENST00000610000 484 ntBASIC15.14■□□□□ 0.01
VCANP13611 PNPT1-207ENST00000625249 216 ntTSL 5 BASIC15.14■□□□□ 0.01
VCANP13611 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
VCANP13611 ETNPPL-206ENST00000510706 1692 ntTSL 2 BASIC15.14■□□□□ 0.01
VCANP13611 FXYD3-208ENST00000604404 1322 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
VCANP13611 HLA-DMB-258ENST00000418107 1397 ntAPPRIS P1 BASIC15.14■□□□□ 0.01
VCANP13611 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
VCANP13611 BICDL1-201ENST00000397558 3055 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
VCANP13611 MUTYH-206ENST00000372115 1888 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
VCANP13611 RPL13-204ENST00000452368 1455 ntTSL 2 BASIC15.14■□□□□ 0.01
VCANP13611 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC15.14■□□□□ 0.01
VCANP13611 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
VCANP13611 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC15.13■□□□□ 0.01
VCANP13611 NR3C1-209ENST00000503201 2594 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
VCANP13611 CRISPLD2-203ENST00000564567 1651 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
VCANP13611 ARMC8-220ENST00000489213 1714 ntTSL 5 BASIC15.13■□□□□ 0.01
VCANP13611 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC15.13■□□□□ 0.01
VCANP13611 ASGR2-203ENST00000446679 879 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
VCANP13611 AC018638.5-201ENST00000450885 754 ntBASIC15.13■□□□□ 0.01
VCANP13611 MIR2278-201ENST00000516344 96 ntBASIC15.13■□□□□ 0.01
VCANP13611 ACTBP9-201ENST00000587663 1099 ntBASIC15.13■□□□□ 0.01
VCANP13611 ELMOD1-201ENST00000265840 2852 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
VCANP13611 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC15.13■□□□□ 0.01
VCANP13611 TRMT11-202ENST00000368332 1889 ntAPPRIS ALT1 TSL 2 BASIC15.13■□□□□ 0.01
VCANP13611 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
VCANP13611 WDR81-206ENST00000446363 2968 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
VCANP13611 MRI1-202ENST00000319545 3027 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
VCANP13611 FAM180B-201ENST00000538490 1388 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
VCANP13611 FDFT1-214ENST00000528812 2013 ntTSL 2 BASIC15.13■□□□□ 0.01
VCANP13611 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
VCANP13611 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC15.13■□□□□ 0.01
VCANP13611 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC15.13■□□□□ 0.01
VCANP13611 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC15.13■□□□□ 0.01
VCANP13611 BTBD10-208ENST00000528120 1662 ntTSL 2 BASIC15.13■□□□□ 0.01
VCANP13611 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
VCANP13611 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
VCANP13611 AC006529.1-201ENST00000459978 637 ntBASIC15.13■□□□□ 0.01
VCANP13611 AC008443.1-202ENST00000506340 687 ntTSL 2 BASIC15.13■□□□□ 0.01
VCANP13611 AC010127.1-202ENST00000597623 713 ntTSL 2 BASIC15.13■□□□□ 0.01
VCANP13611 AC139713.2-207ENST00000641556 1292 ntBASIC15.13■□□□□ 0.01
VCANP13611 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC15.13■□□□□ 0.01
VCANP13611 CLP1-202ENST00000525602 1392 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
VCANP13611 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
VCANP13611 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
VCANP13611 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
VCANP13611 STX1A-201ENST00000222812 2095 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
VCANP13611 STX1A-204ENST00000395156 2050 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
VCANP13611 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC15.13■□□□□ 0.01
VCANP13611 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
VCANP13611 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC15.13■□□□□ 0.01
VCANP13611 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
VCANP13611 HYKK-201ENST00000388988 1235 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 39.7 ms