Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 SNX14-203ENST00000369627 3111 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
SDCBPO00560 PHF3-209ENST00000509330 2969 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
SDCBPO00560 AC131212.3-201ENST00000624087 4219 ntBASIC12.9□□□□□ -0.34
SDCBPO00560 NUP54-217ENST00000514987 1563 ntTSL 2 BASIC12.9□□□□□ -0.34
SDCBPO00560 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
SDCBPO00560 AP4M1-205ENST00000422582 1814 ntTSL 2 BASIC12.9□□□□□ -0.34
SDCBPO00560 SRSF5-203ENST00000553521 2815 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
SDCBPO00560 CORO7-222ENST00000574025 2826 ntTSL 2 BASIC12.9□□□□□ -0.34
SDCBPO00560 UBE2D1-201ENST00000373910 2659 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
SDCBPO00560 MFRP-201ENST00000360167 1663 ntTSL 2 BASIC12.9□□□□□ -0.34
SDCBPO00560 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
SDCBPO00560 CCDC117-202ENST00000421503 3766 ntTSL 2 BASIC12.9□□□□□ -0.34
SDCBPO00560 ADGRB2-205ENST00000398547 4857 ntAPPRIS ALT2 TSL 5 BASIC12.9□□□□□ -0.34
SDCBPO00560 FAM98B-202ENST00000397609 4388 ntAPPRIS P2 TSL 5 BASIC12.9□□□□□ -0.34
SDCBPO00560 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
SDCBPO00560 ZNF618-201ENST00000288466 9109 ntAPPRIS P3 TSL 2 BASIC12.9□□□□□ -0.34
SDCBPO00560 MAGED4B-207ENST00000485287 2618 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
SDCBPO00560 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
SDCBPO00560 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
SDCBPO00560 UMODL1-AS1-201ENST00000329015 2141 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
SDCBPO00560 HNRNPH1-201ENST00000329433 2114 ntTSL 2 BASIC12.9□□□□□ -0.34
SDCBPO00560 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
SDCBPO00560 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC12.9□□□□□ -0.34
SDCBPO00560 CENPM-205ENST00000404067 905 ntTSL 3 BASIC12.9□□□□□ -0.34
SDCBPO00560 CENPM-206ENST00000407253 818 ntTSL 2 BASIC12.9□□□□□ -0.34
SDCBPO00560 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC12.9□□□□□ -0.34
SDCBPO00560 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC12.9□□□□□ -0.34
SDCBPO00560 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC12.9□□□□□ -0.34
SDCBPO00560 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC12.9□□□□□ -0.34
SDCBPO00560 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC12.9□□□□□ -0.34
SDCBPO00560 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
SDCBPO00560 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC12.9□□□□□ -0.34
SDCBPO00560 AC140878.1-201ENST00000565277 250 ntBASIC12.9□□□□□ -0.34
SDCBPO00560 CYP1A1-207ENST00000567032 2107 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
SDCBPO00560 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC12.9□□□□□ -0.34
SDCBPO00560 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC12.9□□□□□ -0.34
SDCBPO00560 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC12.9□□□□□ -0.34
SDCBPO00560 AC025048.3-201ENST00000590609 569 ntBASIC12.9□□□□□ -0.34
SDCBPO00560 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
SDCBPO00560 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC12.9□□□□□ -0.34
SDCBPO00560 HPSE2-205ENST00000614306 447 ntTSL 5 BASIC12.9□□□□□ -0.34
SDCBPO00560 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC12.9□□□□□ -0.34
SDCBPO00560 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC12.9□□□□□ -0.34
SDCBPO00560 AC005702.4-201ENST00000618393 416 ntBASIC12.9□□□□□ -0.34
SDCBPO00560 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC12.9□□□□□ -0.34
SDCBPO00560 AC093028.1-201ENST00000622998 982 ntBASIC12.9□□□□□ -0.34
SDCBPO00560 ELF4-201ENST00000308167 4165 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
SDCBPO00560 RCAN2-203ENST00000371374 3327 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
SDCBPO00560 GTPBP1-201ENST00000216044 5126 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
SDCBPO00560 IKBKB-217ENST00000520810 3086 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
SDCBPO00560 Z97205.2-201ENST00000564697 1639 ntBASIC12.9□□□□□ -0.34
SDCBPO00560 XRCC3-211ENST00000555055 2584 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
SDCBPO00560 LRRC17-202ENST00000339431 1963 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
SDCBPO00560 TBXAS1-208ENST00000448866 1963 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
SDCBPO00560 FRMD8-202ENST00000355991 3514 ntTSL 2 BASIC12.9□□□□□ -0.34
SDCBPO00560 IL17RD-208ENST00000640796 2345 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
SDCBPO00560 SLC2A11-223ENST00000611880 3264 ntTSL 2 BASIC12.9□□□□□ -0.34
SDCBPO00560 RGMB-201ENST00000308234 4580 ntAPPRIS P2 TSL 1 (best) BASIC12.9□□□□□ -0.34
SDCBPO00560 ELN-208ENST00000380575 3043 ntAPPRIS ALT2 TSL 1 (best) BASIC12.9□□□□□ -0.34
SDCBPO00560 TPRX1-202ENST00000535759 2059 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
SDCBPO00560 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
SDCBPO00560 SLAIN1-216ENST00000488699 1461 ntTSL 2 BASIC12.9□□□□□ -0.34
SDCBPO00560 ARFGAP1-202ENST00000370275 3467 ntAPPRIS ALT2 TSL 1 (best) BASIC12.9□□□□□ -0.34
SDCBPO00560 ARHGAP45-202ENST00000539243 4184 ntAPPRIS ALT2 TSL 2 BASIC12.9□□□□□ -0.34
SDCBPO00560 PRSS30P-201ENST00000390681 2881 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
SDCBPO00560 BCAT2-201ENST00000316273 1552 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.35
SDCBPO00560 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC12.9□□□□□ -0.35
SDCBPO00560 PDZD7-206ENST00000619208 4135 ntAPPRIS P1 TSL 5 BASIC12.9□□□□□ -0.35
SDCBPO00560 TATDN3-202ENST00000366974 2389 ntAPPRIS P3 TSL 1 (best) BASIC12.89□□□□□ -0.35
SDCBPO00560 INHBA-205ENST00000638023 2002 ntAPPRIS P1 TSL 5 BASIC12.89□□□□□ -0.35
SDCBPO00560 CEP131-202ENST00000374782 3505 ntAPPRIS P3 TSL 5 BASIC12.89□□□□□ -0.35
SDCBPO00560 AKNA-204ENST00000374075 5038 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
SDCBPO00560 LDLRAD4-205ENST00000585931 2118 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
SDCBPO00560 LBH-201ENST00000395323 2933 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
SDCBPO00560 PRRT2-202ENST00000358758 2567 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
SDCBPO00560 RTP1-201ENST00000312295 2217 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
SDCBPO00560 PRDM16-206ENST00000511072 4282 ntAPPRIS ALT2 TSL 5 BASIC12.89□□□□□ -0.35
SDCBPO00560 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC12.89□□□□□ -0.35
SDCBPO00560 TMEM209-202ENST00000462753 2322 ntAPPRIS ALT1 TSL 5 BASIC12.89□□□□□ -0.35
SDCBPO00560 IL17RD-203ENST00000463523 2348 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
SDCBPO00560 OSBPL5-202ENST00000348039 2798 ntTSL 2 BASIC12.89□□□□□ -0.35
SDCBPO00560 VPS26B-201ENST00000281187 3691 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
SDCBPO00560 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
SDCBPO00560 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
SDCBPO00560 FAM153B-220ENST00000515817 1966 ntAPPRIS P2 TSL 5 BASIC12.89□□□□□ -0.35
SDCBPO00560 TFR2-201ENST00000223051 2888 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
SDCBPO00560 CILP2-202ENST00000586018 4234 ntAPPRIS ALT1 TSL 2 BASIC12.89□□□□□ -0.35
SDCBPO00560 ZNF717-204ENST00000478296 3875 ntAPPRIS P1 TSL 5 BASIC12.89□□□□□ -0.35
SDCBPO00560 TICRR-202ENST00000560985 6656 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
SDCBPO00560 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC12.89□□□□□ -0.35
SDCBPO00560 TMEM184B-202ENST00000361906 3611 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
SDCBPO00560 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
SDCBPO00560 FGF7P3-202ENST00000640245 1707 ntTSL 4 BASIC12.89□□□□□ -0.35
SDCBPO00560 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
SDCBPO00560 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
SDCBPO00560 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
SDCBPO00560 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
SDCBPO00560 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC12.89□□□□□ -0.35
SDCBPO00560 WRB-204ENST00000398753 699 ntTSL 3 BASIC12.89□□□□□ -0.35
SDCBPO00560 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC12.89□□□□□ -0.35
Retrieved 100 of 98,524 protein–RNA pairs in 40.8 ms