Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 SHC1-205ENST00000368453 3062 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.05
VPS4AQ9UN37 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
VPS4AQ9UN37 CECR7-202ENST00000441006 2726 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
VPS4AQ9UN37 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
VPS4AQ9UN37 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
VPS4AQ9UN37 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC14.71□□□□□ -0.05
VPS4AQ9UN37 BRWD1P1-201ENST00000401091 371 ntBASIC14.71□□□□□ -0.05
VPS4AQ9UN37 BMP7-AS1-201ENST00000445956 436 ntTSL 2 BASIC14.71□□□□□ -0.05
VPS4AQ9UN37 BNIP3P42-201ENST00000454982 569 ntBASIC14.71□□□□□ -0.05
VPS4AQ9UN37 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC14.71□□□□□ -0.05
VPS4AQ9UN37 AC119751.2-201ENST00000504529 210 ntBASIC14.71□□□□□ -0.05
VPS4AQ9UN37 AC233702.7-201ENST00000536958 924 ntTSL 5 BASIC14.71□□□□□ -0.05
VPS4AQ9UN37 XRCC3-210ENST00000554974 575 ntTSL 4 BASIC14.71□□□□□ -0.05
VPS4AQ9UN37 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC14.71□□□□□ -0.05
VPS4AQ9UN37 AC009065.5-201ENST00000565937 596 ntTSL 3 BASIC14.71□□□□□ -0.05
VPS4AQ9UN37 AC009133.2-201ENST00000566537 547 ntTSL 4 BASIC14.71□□□□□ -0.05
VPS4AQ9UN37 AC009134.1-201ENST00000571939 443 ntTSL 3 BASIC14.71□□□□□ -0.05
VPS4AQ9UN37 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
VPS4AQ9UN37 BNIP3P29-201ENST00000598302 571 ntBASIC14.71□□□□□ -0.05
VPS4AQ9UN37 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC14.71□□□□□ -0.05
VPS4AQ9UN37 5S_rRNA.22-201ENST00000614916 106 ntBASIC14.71□□□□□ -0.05
VPS4AQ9UN37 AC011447.5-201ENST00000616168 564 ntBASIC14.71□□□□□ -0.05
VPS4AQ9UN37 MIR6069-201ENST00000620069 79 ntBASIC14.71□□□□□ -0.05
VPS4AQ9UN37 GPR182-203ENST00000622922 591 ntBASIC14.71□□□□□ -0.05
VPS4AQ9UN37 SFTA2-203ENST00000634371 815 ntTSL 5 BASIC14.71□□□□□ -0.05
VPS4AQ9UN37 AL033527.5-201ENST00000641382 801 ntBASIC14.71□□□□□ -0.05
VPS4AQ9UN37 SERP1-201ENST00000239944 3171 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
VPS4AQ9UN37 PEX26-205ENST00000610387 3924 ntTSL 5 BASIC14.71□□□□□ -0.05
VPS4AQ9UN37 RPH3AL-201ENST00000323434 2809 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
VPS4AQ9UN37 AC026688.2-201ENST00000518984 1734 ntTSL 3 BASIC14.71□□□□□ -0.05
VPS4AQ9UN37 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
VPS4AQ9UN37 FRMD5-201ENST00000402883 4091 ntTSL 5 BASIC14.71□□□□□ -0.05
VPS4AQ9UN37 LINC01184-204ENST00000501702 2977 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
VPS4AQ9UN37 RPGRIP1-210ENST00000556336 2955 ntTSL 5 BASIC14.71□□□□□ -0.05
VPS4AQ9UN37 CFAP53-201ENST00000398545 1851 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
VPS4AQ9UN37 CTTN-202ENST00000346329 3272 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.05
VPS4AQ9UN37 PIGT-246ENST00000639499 2021 ntTSL 5 BASIC14.71□□□□□ -0.05
VPS4AQ9UN37 CIAPIN1-201ENST00000394391 2182 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
VPS4AQ9UN37 ZNF74-209ENST00000611540 3714 ntAPPRIS P2 TSL 2 BASIC14.71□□□□□ -0.05
VPS4AQ9UN37 DDX56-201ENST00000258772 2336 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
VPS4AQ9UN37 AJ011931.1-201ENST00000618749 2492 ntBASIC14.71□□□□□ -0.05
VPS4AQ9UN37 AC104836.1-202ENST00000636805 6041 ntAPPRIS P1 TSL 5 BASIC14.71□□□□□ -0.06
VPS4AQ9UN37 AP002990.1-202ENST00000496634 5064 ntAPPRIS P1 TSL 2 BASIC14.71□□□□□ -0.06
VPS4AQ9UN37 KCNT1-207ENST00000487664 3845 ntAPPRIS ALT2 TSL 5 BASIC14.71□□□□□ -0.06
VPS4AQ9UN37 KCNJ5-203ENST00000533599 1350 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
VPS4AQ9UN37 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC14.71□□□□□ -0.06
VPS4AQ9UN37 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC14.71□□□□□ -0.06
VPS4AQ9UN37 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC14.71□□□□□ -0.06
VPS4AQ9UN37 MAGEA12-201ENST00000357916 1664 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
VPS4AQ9UN37 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC14.71□□□□□ -0.06
VPS4AQ9UN37 DDIAS-203ENST00000525361 1830 ntAPPRIS ALT2 TSL 2 BASIC14.71□□□□□ -0.06
VPS4AQ9UN37 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC14.71□□□□□ -0.06
VPS4AQ9UN37 ZNF165-201ENST00000377325 2107 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
VPS4AQ9UN37 SEPT9-244ENST00000592420 2588 ntTSL 2 BASIC14.71□□□□□ -0.06
VPS4AQ9UN37 CA12-202ENST00000344366 2744 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.06
VPS4AQ9UN37 GCK-204ENST00000403799 2729 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
VPS4AQ9UN37 PWWP2A-201ENST00000307063 3346 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
VPS4AQ9UN37 UCKL1-AS1-201ENST00000623569 3602 ntBASIC14.71□□□□□ -0.06
VPS4AQ9UN37 PSD2-201ENST00000274710 4513 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
VPS4AQ9UN37 ASTN2-206ENST00000361477 4001 ntTSL 5 BASIC14.7□□□□□ -0.06
VPS4AQ9UN37 PTPN5-204ENST00000396170 3871 ntTSL 2 BASIC14.7□□□□□ -0.06
VPS4AQ9UN37 SLC13A5-203ENST00000433363 3435 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
VPS4AQ9UN37 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC14.7□□□□□ -0.06
VPS4AQ9UN37 LHFPL4-201ENST00000287585 4880 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
VPS4AQ9UN37 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
VPS4AQ9UN37 FAM214B-202ENST00000378557 3070 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
VPS4AQ9UN37 GATA3-202ENST00000379328 3078 ntAPPRIS ALT1 TSL 1 (best) BASIC14.7□□□□□ -0.06
VPS4AQ9UN37 GALNTL6-205ENST00000511251 2905 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
VPS4AQ9UN37 PCDHB14-201ENST00000239449 4828 ntAPPRIS P1 BASIC14.7□□□□□ -0.06
VPS4AQ9UN37 MGRN1-202ENST00000399577 6425 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.06
VPS4AQ9UN37 ST6GAL2-204ENST00000409382 7275 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
VPS4AQ9UN37 MAPKBP1-215ENST00000514566 5394 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
VPS4AQ9UN37 MROH1-209ENST00000534366 5092 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.06
VPS4AQ9UN37 SYNGAP1-203ENST00000428982 4339 ntTSL 5 BASIC14.7□□□□□ -0.06
VPS4AQ9UN37 GPKOW-201ENST00000156109 1742 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
VPS4AQ9UN37 CNTNAP3P2-201ENST00000617175 3861 ntBASIC14.7□□□□□ -0.06
VPS4AQ9UN37 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC14.7□□□□□ -0.06
VPS4AQ9UN37 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
VPS4AQ9UN37 TMPRSS6-202ENST00000381792 3260 ntAPPRIS ALT2 TSL 5 BASIC14.7□□□□□ -0.06
VPS4AQ9UN37 RUNX1T1-251ENST00000615601 7372 ntAPPRIS ALT1 TSL 5 BASIC14.7□□□□□ -0.06
VPS4AQ9UN37 CSF2-201ENST00000296871 787 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
VPS4AQ9UN37 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.06
VPS4AQ9UN37 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
VPS4AQ9UN37 GBGT1-202ENST00000372038 847 ntTSL 3 BASIC14.7□□□□□ -0.06
VPS4AQ9UN37 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
VPS4AQ9UN37 AC092933.1-201ENST00000393644 945 ntBASIC14.7□□□□□ -0.06
VPS4AQ9UN37 RHCE-206ENST00000413854 1198 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
VPS4AQ9UN37 AC105940.2-201ENST00000421055 380 ntTSL 3 BASIC14.7□□□□□ -0.06
VPS4AQ9UN37 USP40-206ENST00000443711 628 ntTSL 2 BASIC14.7□□□□□ -0.06
VPS4AQ9UN37 AC017116.1-201ENST00000445938 708 ntTSL 3 BASIC14.7□□□□□ -0.06
VPS4AQ9UN37 SLED1-202ENST00000512051 380 ntBASIC14.7□□□□□ -0.06
VPS4AQ9UN37 AC104596.2-201ENST00000512793 793 ntBASIC14.7□□□□□ -0.06
VPS4AQ9UN37 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC14.7□□□□□ -0.06
VPS4AQ9UN37 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC14.7□□□□□ -0.06
VPS4AQ9UN37 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
VPS4AQ9UN37 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC14.7□□□□□ -0.06
VPS4AQ9UN37 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC14.7□□□□□ -0.06
VPS4AQ9UN37 AC023310.3-201ENST00000557027 670 ntBASIC14.7□□□□□ -0.06
VPS4AQ9UN37 AC100756.1-201ENST00000562736 682 ntBASIC14.7□□□□□ -0.06
VPS4AQ9UN37 AC138749.3-201ENST00000567691 622 ntBASIC14.7□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 52 ms