Protein–RNA interactions for Protein: Q9NVE4

CCDC87, Coiled-coil domain-containing protein 87, humanhuman

Predictions only

Length 849 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC87Q9NVE4 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCDC87Q9NVE4 TMBIM7P-202ENST00000641474 1516 ntBASIC18.8■□□□□ 0.6
CCDC87Q9NVE4 FYN-205ENST00000368682 3234 ntAPPRIS ALT1 TSL 5 BASIC18.8■□□□□ 0.6
CCDC87Q9NVE4 MAEA-207ENST00000505177 1340 ntTSL 5 BASIC18.8■□□□□ 0.6
CCDC87Q9NVE4 PCED1B-201ENST00000432328 1862 ntAPPRIS P1 TSL 3 BASIC18.8■□□□□ 0.6
CCDC87Q9NVE4 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC18.8■□□□□ 0.6
CCDC87Q9NVE4 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC18.8■□□□□ 0.6
CCDC87Q9NVE4 AC026691.1-201ENST00000602502 2017 ntBASIC18.8■□□□□ 0.6
CCDC87Q9NVE4 MAGEA2-209ENST00000623806 2025 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
CCDC87Q9NVE4 FMR1NB-201ENST00000370467 1021 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCDC87Q9NVE4 PRTFDC1-202ENST00000376376 741 ntTSL 2 BASIC18.8■□□□□ 0.6
CCDC87Q9NVE4 AL512430.1-201ENST00000392575 860 ntBASIC18.8■□□□□ 0.6
CCDC87Q9NVE4 AL592076.1-201ENST00000424448 303 ntBASIC18.8■□□□□ 0.6
CCDC87Q9NVE4 LINC00278-201ENST00000425031 528 ntTSL 2 BASIC18.8■□□□□ 0.6
CCDC87Q9NVE4 FKBP11-202ENST00000444214 630 ntTSL 2 BASIC18.8■□□□□ 0.6
CCDC87Q9NVE4 IGHV3-37-201ENST00000518544 340 ntBASIC18.8■□□□□ 0.6
CCDC87Q9NVE4 LINC01584-201ENST00000562495 676 ntTSL 5 BASIC18.8■□□□□ 0.6
CCDC87Q9NVE4 AC010754.1-201ENST00000582300 1061 ntTSL 3 BASIC18.8■□□□□ 0.6
CCDC87Q9NVE4 MIR3188-201ENST00000583494 85 ntBASIC18.8■□□□□ 0.6
CCDC87Q9NVE4 AC005632.3-201ENST00000605544 308 ntBASIC18.8■□□□□ 0.6
CCDC87Q9NVE4 CYP1B1-AS1-221ENST00000627172 995 ntTSL 5 BASIC18.8■□□□□ 0.6
CCDC87Q9NVE4 AC004706.3-207ENST00000634823 977 ntTSL 5 BASIC18.8■□□□□ 0.6
CCDC87Q9NVE4 AC079325.2-202ENST00000641031 462 ntAPPRIS ALT2 BASIC18.8■□□□□ 0.6
CCDC87Q9NVE4 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCDC87Q9NVE4 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCDC87Q9NVE4 SNRPN-203ENST00000400097 1605 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCDC87Q9NVE4 AC023024.2-201ENST00000623561 1993 ntBASIC18.8■□□□□ 0.6
CCDC87Q9NVE4 LRP10-203ENST00000546834 1780 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
CCDC87Q9NVE4 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCDC87Q9NVE4 UBXN11-202ENST00000357089 1555 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
CCDC87Q9NVE4 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC18.8■□□□□ 0.6
CCDC87Q9NVE4 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CCDC87Q9NVE4 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC87Q9NVE4 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC18.79■□□□□ 0.6
CCDC87Q9NVE4 PTPRN2-205ENST00000409483 4711 ntAPPRIS ALT2 TSL 2 BASIC18.79■□□□□ 0.6
CCDC87Q9NVE4 AC112693.3-201ENST00000624819 1983 ntBASIC18.79■□□□□ 0.6
CCDC87Q9NVE4 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC18.79■□□□□ 0.6
CCDC87Q9NVE4 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC87Q9NVE4 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC87Q9NVE4 TM9SF1-202ENST00000396854 2055 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC87Q9NVE4 LAIR2-201ENST00000301202 699 ntAPPRIS P4 TSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC87Q9NVE4 RASSF3-202ENST00000336061 1030 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC87Q9NVE4 MBP-201ENST00000354542 575 ntTSL 2 BASIC18.79■□□□□ 0.6
CCDC87Q9NVE4 PPIE-202ENST00000356511 1079 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC87Q9NVE4 CHCHD2-201ENST00000395422 901 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC87Q9NVE4 ORMDL1-204ENST00000409519 1223 ntTSL 3 BASIC18.79■□□□□ 0.6
CCDC87Q9NVE4 AL589843.1-201ENST00000423924 425 ntTSL 2 BASIC18.79■□□□□ 0.6
CCDC87Q9NVE4 AC116609.2-201ENST00000431542 256 ntTSL 5 BASIC18.79■□□□□ 0.6
CCDC87Q9NVE4 AP000358.1-201ENST00000456260 156 ntBASIC18.79■□□□□ 0.6
CCDC87Q9NVE4 NDUFS6P1-201ENST00000485187 316 ntBASIC18.79■□□□□ 0.6
CCDC87Q9NVE4 AC092535.3-201ENST00000504969 468 ntTSL 3 BASIC18.79■□□□□ 0.6
CCDC87Q9NVE4 TMEM220-AS1-207ENST00000584714 541 ntTSL 4 BASIC18.79■□□□□ 0.6
CCDC87Q9NVE4 PIN1-207ENST00000588695 648 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
CCDC87Q9NVE4 ZNF772-207ENST00000601768 482 ntTSL 3 BASIC18.79■□□□□ 0.6
CCDC87Q9NVE4 LAPTM5-201ENST00000294507 2223 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC87Q9NVE4 RAI2-204ENST00000451717 2224 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC87Q9NVE4 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC87Q9NVE4 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC87Q9NVE4 MROH4P-201ENST00000431302 1578 ntBASIC18.79■□□□□ 0.6
CCDC87Q9NVE4 PSMC3-213ENST00000619920 1580 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC87Q9NVE4 FAS-202ENST00000352159 1722 ntTSL 5 BASIC18.79■□□□□ 0.6
CCDC87Q9NVE4 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC18.79■□□□□ 0.6
CCDC87Q9NVE4 CMPK1-203ENST00000371873 2930 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC87Q9NVE4 NR3C1-209ENST00000503201 2594 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC87Q9NVE4 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC87Q9NVE4 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC18.79■□□□□ 0.6
CCDC87Q9NVE4 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC18.79■□□□□ 0.6
CCDC87Q9NVE4 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC87Q9NVE4 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC18.78■□□□□ 0.6
CCDC87Q9NVE4 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC87Q9NVE4 GPR176-205ENST00000561100 2816 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC87Q9NVE4 FBXO5-202ENST00000367241 2221 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC87Q9NVE4 ZNF32-AS3-201ENST00000458063 1932 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC87Q9NVE4 AC104758.3-201ENST00000563349 1453 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC87Q9NVE4 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
CCDC87Q9NVE4 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC87Q9NVE4 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC87Q9NVE4 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC87Q9NVE4 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC87Q9NVE4 ENO3-202ENST00000518175 1448 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC87Q9NVE4 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC87Q9NVE4 ASNA1-201ENST00000357332 1280 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC87Q9NVE4 AL583805.1-201ENST00000391389 531 ntBASIC18.78■□□□□ 0.6
CCDC87Q9NVE4 SETD7-203ENST00000406354 1127 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC87Q9NVE4 HNRNPA1P27-201ENST00000412087 955 ntBASIC18.78■□□□□ 0.6
CCDC87Q9NVE4 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC18.78■□□□□ 0.6
CCDC87Q9NVE4 PTPA-215ENST00000432124 567 ntTSL 4 BASIC18.78■□□□□ 0.6
CCDC87Q9NVE4 NAGK-204ENST00000443872 878 ntTSL 3 BASIC18.78■□□□□ 0.6
CCDC87Q9NVE4 SNHG14-209ENST00000456576 544 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC87Q9NVE4 AC130709.1-201ENST00000484779 1212 ntBASIC18.78■□□□□ 0.6
CCDC87Q9NVE4 AL157792.1-201ENST00000488281 530 ntBASIC18.78■□□□□ 0.6
CCDC87Q9NVE4 LINC02417-201ENST00000542449 515 ntTSL 2 BASIC18.78■□□□□ 0.6
CCDC87Q9NVE4 AC010531.4-203ENST00000561709 660 ntTSL 3 BASIC18.78■□□□□ 0.6
CCDC87Q9NVE4 JMJD8-203ENST00000562824 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC87Q9NVE4 UPF3AP2-202ENST00000578315 730 ntTSL 5 BASIC18.78■□□□□ 0.6
CCDC87Q9NVE4 PRMT5-AS1-206ENST00000599580 847 ntTSL 5 BASIC18.78■□□□□ 0.6
CCDC87Q9NVE4 C3orf33-205ENST00000534941 1804 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC87Q9NVE4 C18orf15-201ENST00000623680 2534 ntBASIC18.78■□□□□ 0.6
CCDC87Q9NVE4 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC87Q9NVE4 PDK2-201ENST00000007708 2384 ntTSL 2 BASIC18.78■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 35.7 ms