Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.65
SYNE1Q8NF91 PLA2G5-201ENST00000375108 1161 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.65
SYNE1Q8NF91 LITAF-218ENST00000576036 603 ntAPPRIS P1 TSL 4 BASIC4.71□□□□□ -1.65
SYNE1Q8NF91 LINC00479-204ENST00000589300 718 ntTSL 1 (best) BASIC4.71□□□□□ -1.65
SYNE1Q8NF91 COL6A2-201ENST00000300527 3461 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.65
SYNE1Q8NF91 FAM163A-201ENST00000341785 2909 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.65
SYNE1Q8NF91 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.65
SYNE1Q8NF91 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.65
SYNE1Q8NF91 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.65
SYNE1Q8NF91 SNCAIP-222ENST00000542191 2729 ntTSL 5 BASIC4.71□□□□□ -1.65
SYNE1Q8NF91 ALDH3A2-226ENST00000631291 3822 ntTSL 5 BASIC4.71□□□□□ -1.65
SYNE1Q8NF91 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC4.71□□□□□ -1.65
SYNE1Q8NF91 MSTO1-201ENST00000245564 2431 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.65
SYNE1Q8NF91 CNN2P8-201ENST00000421872 913 ntBASIC4.71□□□□□ -1.65
SYNE1Q8NF91 GOLGA2P4-201ENST00000441462 777 ntBASIC4.71□□□□□ -1.65
SYNE1Q8NF91 HIST2H2BC-201ENST00000498492 580 ntBASIC4.71□□□□□ -1.65
SYNE1Q8NF91 AP002490.2-201ENST00000524791 560 ntBASIC4.71□□□□□ -1.65
SYNE1Q8NF91 ZNF7-206ENST00000528130 1134 ntTSL 5 BASIC4.71□□□□□ -1.65
SYNE1Q8NF91 AC084859.1-201ENST00000533002 670 ntTSL 4 BASIC4.71□□□□□ -1.65
SYNE1Q8NF91 MIR4741-201ENST00000579822 90 ntBASIC4.71□□□□□ -1.65
SYNE1Q8NF91 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC4.71□□□□□ -1.65
SYNE1Q8NF91 TAB1-201ENST00000216160 3237 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.65
SYNE1Q8NF91 USP19-206ENST00000417901 4706 ntAPPRIS ALT2 TSL 1 (best) BASIC4.71□□□□□ -1.65
SYNE1Q8NF91 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC4.71□□□□□ -1.65
SYNE1Q8NF91 TRIM4-201ENST00000349062 3374 ntAPPRIS ALT2 TSL 1 (best) BASIC4.71□□□□□ -1.65
SYNE1Q8NF91 PRPSAP1-206ENST00000446526 3660 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.65
SYNE1Q8NF91 NEIL2-201ENST00000284503 2671 ntAPPRIS P1 TSL 2 BASIC4.71□□□□□ -1.65
SYNE1Q8NF91 DMTF1-202ENST00000394703 4038 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
SYNE1Q8NF91 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
SYNE1Q8NF91 VWA8-201ENST00000281496 3475 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
SYNE1Q8NF91 DUSP28-202ENST00000405954 3461 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
SYNE1Q8NF91 VSIG2-201ENST00000326621 1148 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
SYNE1Q8NF91 DBNDD2-201ENST00000357275 1036 ntAPPRIS P1 TSL 5 BASIC4.71□□□□□ -1.66
SYNE1Q8NF91 TMBIM4-202ENST00000358230 2952 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
SYNE1Q8NF91 PEMT-203ENST00000395782 895 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
SYNE1Q8NF91 HIST2H2BB-201ENST00000449108 381 ntBASIC4.71□□□□□ -1.66
SYNE1Q8NF91 AC124283.3-201ENST00000570869 594 ntBASIC4.71□□□□□ -1.66
SYNE1Q8NF91 RN7SL219P-201ENST00000582872 296 ntBASIC4.71□□□□□ -1.66
SYNE1Q8NF91 GPX4-206ENST00000588919 803 ntTSL 2 BASIC4.71□□□□□ -1.66
SYNE1Q8NF91 PCDHGC3-204ENST00000617222 731 ntTSL 3 BASIC4.71□□□□□ -1.66
SYNE1Q8NF91 RBM8A-206ENST00000632555 751 ntAPPRIS P1 TSL 3 BASIC4.71□□□□□ -1.66
SYNE1Q8NF91 AC006453.4-201ENST00000636949 1252 ntBASIC4.71□□□□□ -1.66
SYNE1Q8NF91 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC4.71□□□□□ -1.66
SYNE1Q8NF91 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
SYNE1Q8NF91 PODN-201ENST00000312553 3010 ntAPPRIS P3 TSL 1 (best) BASIC4.71□□□□□ -1.66
SYNE1Q8NF91 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC4.71□□□□□ -1.66
SYNE1Q8NF91 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
SYNE1Q8NF91 HMBS-216ENST00000543090 1347 ntTSL 5 BASIC4.71□□□□□ -1.66
SYNE1Q8NF91 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC4.71□□□□□ -1.66
SYNE1Q8NF91 BCAR1-205ENST00000420641 2725 ntAPPRIS ALT2 TSL 2 BASIC4.71□□□□□ -1.66
SYNE1Q8NF91 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC4.71□□□□□ -1.66
SYNE1Q8NF91 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC4.71□□□□□ -1.66
SYNE1Q8NF91 HBP1-201ENST00000222574 2829 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
SYNE1Q8NF91 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
SYNE1Q8NF91 EHMT2-201ENST00000375528 4047 ntAPPRIS ALT2 TSL 2 BASIC4.71□□□□□ -1.66
SYNE1Q8NF91 CUL4A-204ENST00000451881 3724 ntTSL 5 BASIC4.71□□□□□ -1.66
SYNE1Q8NF91 SCNN1D-205ENST00000379116 3044 ntAPPRIS P2 TSL 5 BASIC4.71□□□□□ -1.66
SYNE1Q8NF91 MFN2-201ENST00000235329 4539 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
SYNE1Q8NF91 AC068587.6-202ENST00000641839 5619 ntBASIC4.71□□□□□ -1.66
SYNE1Q8NF91 LMO4-201ENST00000370542 1260 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
SYNE1Q8NF91 AGER-203ENST00000375065 665 ntTSL 2 BASIC4.71□□□□□ -1.66
SYNE1Q8NF91 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC4.71□□□□□ -1.66
SYNE1Q8NF91 SEPT7P9-202ENST00000489259 743 ntTSL 3 BASIC4.71□□□□□ -1.66
SYNE1Q8NF91 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC4.71□□□□□ -1.66
SYNE1Q8NF91 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC4.71□□□□□ -1.66
SYNE1Q8NF91 KDM2B-215ENST00000542973 3170 ntTSL 2 BASIC4.71□□□□□ -1.66
SYNE1Q8NF91 MIR497HG-202ENST00000572453 3838 ntBASIC4.71□□□□□ -1.66
SYNE1Q8NF91 ZSCAN32-215ENST00000618425 2788 ntTSL 2 BASIC4.71□□□□□ -1.66
SYNE1Q8NF91 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
SYNE1Q8NF91 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
SYNE1Q8NF91 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
SYNE1Q8NF91 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC4.71□□□□□ -1.66
SYNE1Q8NF91 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC4.71□□□□□ -1.66
SYNE1Q8NF91 RNF182-206ENST00000537388 3274 ntAPPRIS P1 TSL 2 BASIC4.71□□□□□ -1.66
SYNE1Q8NF91 C8orf74-201ENST00000304519 1036 ntAPPRIS P2 TSL 1 (best) BASIC4.71□□□□□ -1.66
SYNE1Q8NF91 PRDX5-203ENST00000352435 596 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
SYNE1Q8NF91 AC004987.2-201ENST00000395959 1148 ntBASIC4.71□□□□□ -1.66
SYNE1Q8NF91 C1QBPP1-201ENST00000400117 770 ntBASIC4.71□□□□□ -1.66
SYNE1Q8NF91 AC018467.1-201ENST00000421581 717 ntTSL 5 BASIC4.71□□□□□ -1.66
SYNE1Q8NF91 AC026954.1-201ENST00000429771 1293 ntBASIC4.71□□□□□ -1.66
SYNE1Q8NF91 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC4.71□□□□□ -1.66
SYNE1Q8NF91 ARL16-210ENST00000574938 751 ntTSL 2 BASIC4.71□□□□□ -1.66
SYNE1Q8NF91 AC107373.2-201ENST00000607735 490 ntBASIC4.71□□□□□ -1.66
SYNE1Q8NF91 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
SYNE1Q8NF91 RGR-201ENST00000358110 1349 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
SYNE1Q8NF91 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC4.71□□□□□ -1.66
SYNE1Q8NF91 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC4.71□□□□□ -1.66
SYNE1Q8NF91 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC4.71□□□□□ -1.66
SYNE1Q8NF91 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC4.71□□□□□ -1.66
SYNE1Q8NF91 DUOX1-202ENST00000389037 5483 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
SYNE1Q8NF91 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
SYNE1Q8NF91 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC4.71□□□□□ -1.66
SYNE1Q8NF91 HOXA3-202ENST00000396352 3263 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
SYNE1Q8NF91 TMOD1-201ENST00000259365 3343 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
SYNE1Q8NF91 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
SYNE1Q8NF91 KATNA1-201ENST00000335643 1564 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
SYNE1Q8NF91 LRRFIP1P1-201ENST00000498774 2246 ntBASIC4.71□□□□□ -1.66
SYNE1Q8NF91 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC4.71□□□□□ -1.66
SYNE1Q8NF91 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC4.71□□□□□ -1.66
SYNE1Q8NF91 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC4.71□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 33.9 ms