Protein–RNA interactions for Protein: Q8N3C7

CLIP4, CAP-Gly domain-containing linker protein 4, humanhuman

Predictions only

Length 705 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP4Q8N3C7 KRT18P43-201ENST00000469825 1281 ntBASIC14.25□□□□□ -0.13
CLIP4Q8N3C7 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC14.25□□□□□ -0.13
CLIP4Q8N3C7 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
CLIP4Q8N3C7 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
CLIP4Q8N3C7 AC067863.1-201ENST00000494933 530 ntBASIC14.25□□□□□ -0.13
CLIP4Q8N3C7 AC087612.1-201ENST00000560238 658 ntTSL 5 BASIC14.25□□□□□ -0.13
CLIP4Q8N3C7 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC14.25□□□□□ -0.13
CLIP4Q8N3C7 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC14.25□□□□□ -0.13
CLIP4Q8N3C7 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC14.25□□□□□ -0.13
CLIP4Q8N3C7 HPSE2-205ENST00000614306 447 ntTSL 5 BASIC14.25□□□□□ -0.13
CLIP4Q8N3C7 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC14.25□□□□□ -0.13
CLIP4Q8N3C7 INF2-209ENST00000617571 2956 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
CLIP4Q8N3C7 PRICKLE1-201ENST00000345127 5902 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CLIP4Q8N3C7 DNMT3B-204ENST00000353855 4237 ntTSL 5 BASIC14.25□□□□□ -0.13
CLIP4Q8N3C7 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CLIP4Q8N3C7 GLIS2-202ENST00000433375 3705 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CLIP4Q8N3C7 NADSYN1-216ENST00000530055 2416 ntTSL 2 BASIC14.25□□□□□ -0.13
CLIP4Q8N3C7 FAM98A-201ENST00000238823 2816 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CLIP4Q8N3C7 KLHDC7A-201ENST00000400664 5145 ntAPPRIS P1 BASIC14.25□□□□□ -0.13
CLIP4Q8N3C7 PDE8A-203ENST00000394553 3912 ntAPPRIS P4 TSL 1 (best) BASIC14.25□□□□□ -0.13
CLIP4Q8N3C7 FOXF1-201ENST00000262426 3516 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CLIP4Q8N3C7 GNAO1-214ENST00000638705 3529 ntAPPRIS P5 TSL 1 (best) BASIC14.25□□□□□ -0.13
CLIP4Q8N3C7 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC14.25□□□□□ -0.13
CLIP4Q8N3C7 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CLIP4Q8N3C7 MOG-215ENST00000376888 1529 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
CLIP4Q8N3C7 PLIN4-202ENST00000633942 6484 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
CLIP4Q8N3C7 RIMS1-214ENST00000518273 4116 ntTSL 5 BASIC14.25□□□□□ -0.13
CLIP4Q8N3C7 ATP2A3-202ENST00000352011 3274 ntTSL 5 BASIC14.25□□□□□ -0.13
CLIP4Q8N3C7 RNF216-202ENST00000389902 3293 ntAPPRIS P4 TSL 1 (best) BASIC14.25□□□□□ -0.13
CLIP4Q8N3C7 SLC34A2-203ENST00000504570 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
CLIP4Q8N3C7 OXA1L-203ENST00000412791 1440 ntTSL 5 BASIC14.24□□□□□ -0.13
CLIP4Q8N3C7 CD2BP2-203ENST00000569466 1417 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CLIP4Q8N3C7 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
CLIP4Q8N3C7 MBD1-217ENST00000588937 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
CLIP4Q8N3C7 FDFT1-223ENST00000615631 2462 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
CLIP4Q8N3C7 KIF7-201ENST00000394412 4551 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
CLIP4Q8N3C7 MEF2D-201ENST00000348159 5965 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
CLIP4Q8N3C7 FAM86B1-216ENST00000533852 2043 ntAPPRIS ALT2 TSL 5 BASIC14.24□□□□□ -0.13
CLIP4Q8N3C7 BIRC2-214ENST00000621637 3331 ntTSL 5 BASIC14.24□□□□□ -0.13
CLIP4Q8N3C7 RAD51C-215ENST00000583539 1319 ntAPPRIS ALT2 TSL 2 BASIC14.24□□□□□ -0.13
CLIP4Q8N3C7 TNFSF13-201ENST00000338784 1971 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
CLIP4Q8N3C7 RCAN3-207ENST00000538532 2640 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CLIP4Q8N3C7 MINDY1-207ENST00000622754 2637 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CLIP4Q8N3C7 CCDC116-201ENST00000292779 2260 ntAPPRIS P2 TSL 1 (best) BASIC14.24□□□□□ -0.13
CLIP4Q8N3C7 NME7-201ENST00000367811 1642 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
CLIP4Q8N3C7 ASAP1-202ENST00000518721 5507 ntAPPRIS P3 TSL 5 BASIC14.24□□□□□ -0.13
CLIP4Q8N3C7 NDRG4-217ENST00000562999 2931 ntTSL 5 BASIC14.24□□□□□ -0.13
CLIP4Q8N3C7 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC14.24□□□□□ -0.13
CLIP4Q8N3C7 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CLIP4Q8N3C7 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC14.24□□□□□ -0.13
CLIP4Q8N3C7 FCRLB-204ENST00000367946 1152 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
CLIP4Q8N3C7 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC14.24□□□□□ -0.13
CLIP4Q8N3C7 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC14.24□□□□□ -0.13
CLIP4Q8N3C7 MIR943-201ENST00000401286 94 ntBASIC14.24□□□□□ -0.13
CLIP4Q8N3C7 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC14.24□□□□□ -0.13
CLIP4Q8N3C7 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC14.24□□□□□ -0.13
CLIP4Q8N3C7 URGCP-206ENST00000446958 365 ntTSL 2 BASIC14.24□□□□□ -0.13
CLIP4Q8N3C7 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC14.24□□□□□ -0.13
CLIP4Q8N3C7 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CLIP4Q8N3C7 RAB35-202ENST00000534951 939 ntTSL 2 BASIC14.24□□□□□ -0.13
CLIP4Q8N3C7 DUX4L27-201ENST00000554796 1261 ntBASIC14.24□□□□□ -0.13
CLIP4Q8N3C7 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC14.24□□□□□ -0.13
CLIP4Q8N3C7 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC14.24□□□□□ -0.13
CLIP4Q8N3C7 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
CLIP4Q8N3C7 AL158211.3-201ENST00000607385 239 ntBASIC14.24□□□□□ -0.13
CLIP4Q8N3C7 PCDHGC3-204ENST00000617222 731 ntTSL 3 BASIC14.24□□□□□ -0.13
CLIP4Q8N3C7 AC004461.2-201ENST00000629517 803 ntBASIC14.24□□□□□ -0.13
CLIP4Q8N3C7 PSMC3-213ENST00000619920 1580 ntAPPRIS P2 TSL 1 (best) BASIC14.24□□□□□ -0.13
CLIP4Q8N3C7 SETD6-203ENST00000394266 3423 ntTSL 5 BASIC14.24□□□□□ -0.13
CLIP4Q8N3C7 LRRFIP1-203ENST00000308482 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
CLIP4Q8N3C7 TSEN2-201ENST00000284995 2381 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CLIP4Q8N3C7 SPOCK3-210ENST00000506886 2947 ntAPPRIS ALT2 TSL 5 BASIC14.24□□□□□ -0.13
CLIP4Q8N3C7 SPOCK3-218ENST00000511531 2908 ntAPPRIS ALT2 TSL 5 BASIC14.24□□□□□ -0.13
CLIP4Q8N3C7 MAPT-206ENST00000415613 2331 ntAPPRIS ALT2 TSL 5 BASIC14.24□□□□□ -0.13
CLIP4Q8N3C7 PNPLA5-202ENST00000381198 2000 ntTSL 2 BASIC14.24□□□□□ -0.13
CLIP4Q8N3C7 SLC37A4-216ENST00000538950 2032 ntTSL 5 BASIC14.24□□□□□ -0.13
CLIP4Q8N3C7 KIAA0319-204ENST00000537886 6622 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
CLIP4Q8N3C7 SYCP2L-201ENST00000283141 3130 ntAPPRIS P2 TSL 1 (best) BASIC14.24□□□□□ -0.13
CLIP4Q8N3C7 ITGB2-208ENST00000397857 2813 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
CLIP4Q8N3C7 ADAM33-206ENST00000617732 1971 ntTSL 5 BASIC14.23□□□□□ -0.13
CLIP4Q8N3C7 ADAMTS14-201ENST00000373207 5260 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
CLIP4Q8N3C7 CNTFR-204ENST00000610543 1926 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
CLIP4Q8N3C7 WNT2B-202ENST00000369684 3818 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CLIP4Q8N3C7 DBN1-203ENST00000393565 2701 ntAPPRIS ALT2 TSL 5 BASIC14.23□□□□□ -0.13
CLIP4Q8N3C7 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC14.23□□□□□ -0.13
CLIP4Q8N3C7 KRT18P28-201ENST00000453838 1332 ntBASIC14.23□□□□□ -0.13
CLIP4Q8N3C7 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC14.23□□□□□ -0.13
CLIP4Q8N3C7 FOXP3-203ENST00000376207 2382 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CLIP4Q8N3C7 AC027612.1-201ENST00000445234 2395 ntBASIC14.23□□□□□ -0.13
CLIP4Q8N3C7 PTBP1-221ENST00000635647 3691 ntTSL 5 BASIC14.23□□□□□ -0.13
CLIP4Q8N3C7 NOP9-201ENST00000267425 6033 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CLIP4Q8N3C7 MAGEA9-201ENST00000243314 1814 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CLIP4Q8N3C7 GPRASP1-205ENST00000537097 5980 ntAPPRIS P1 TSL 2 BASIC14.23□□□□□ -0.13
CLIP4Q8N3C7 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CLIP4Q8N3C7 WDR25-204ENST00000554175 2055 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
CLIP4Q8N3C7 AC004890.2-205ENST00000416232 2804 ntTSL 2 BASIC14.23□□□□□ -0.13
CLIP4Q8N3C7 FAM219A-201ENST00000297620 3588 ntAPPRIS P3 TSL 2 BASIC14.23□□□□□ -0.13
CLIP4Q8N3C7 TRIM71-201ENST00000383763 8685 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CLIP4Q8N3C7 TFF2-201ENST00000291526 737 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CLIP4Q8N3C7 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 39.3 ms