Protein–RNA interactions for Protein: Q8IX30

SCUBE3, Signal peptide, CUB and EGF-like domain-containing protein 3, humanhuman

Predictions only

Length 993 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCUBE3Q8IX30 SLC24A3-201ENST00000328041 3929 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
SCUBE3Q8IX30 SEPT8-212ENST00000458488 1726 ntTSL 5 BASIC15.88■□□□□ 0.13
SCUBE3Q8IX30 E2F6-211ENST00000542100 3450 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
SCUBE3Q8IX30 STRA6-207ENST00000535552 2631 ntTSL 2 BASIC15.88■□□□□ 0.13
SCUBE3Q8IX30 DDHD2-201ENST00000397166 4921 ntAPPRIS P1 TSL 2 BASIC15.88■□□□□ 0.13
SCUBE3Q8IX30 SIN3B-202ENST00000379803 5129 ntAPPRIS P3 TSL 1 (best) BASIC15.88■□□□□ 0.13
SCUBE3Q8IX30 NDRG2-226ENST00000554104 2146 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
SCUBE3Q8IX30 IFT52-201ENST00000373030 1757 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
SCUBE3Q8IX30 SLC6A11-201ENST00000254488 4296 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
SCUBE3Q8IX30 ATP6AP2-211ENST00000636196 1403 ntAPPRIS ALT2 TSL 5 BASIC15.88■□□□□ 0.13
SCUBE3Q8IX30 HTR3A-202ENST00000355556 2331 ntTSL 2 BASIC15.88■□□□□ 0.13
SCUBE3Q8IX30 KCNG4-202ENST00000568181 2199 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
SCUBE3Q8IX30 NUP93-201ENST00000308159 2741 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
SCUBE3Q8IX30 PDE6D-201ENST00000287600 1175 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
SCUBE3Q8IX30 BEX3-203ENST00000372635 805 ntAPPRIS P1 TSL 2 BASIC15.88■□□□□ 0.13
SCUBE3Q8IX30 ATP5J-205ENST00000400094 589 ntAPPRIS P1 TSL 2 BASIC15.88■□□□□ 0.13
SCUBE3Q8IX30 AC079776.1-201ENST00000401540 1152 ntBASIC15.88■□□□□ 0.13
SCUBE3Q8IX30 LIMS3-201ENST00000437679 1220 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
SCUBE3Q8IX30 LCN10-203ENST00000474369 564 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
SCUBE3Q8IX30 AC092658.1-201ENST00000505836 891 ntBASIC15.88■□□□□ 0.13
SCUBE3Q8IX30 AC008969.1-205ENST00000553254 876 ntTSL 2 BASIC15.88■□□□□ 0.13
SCUBE3Q8IX30 AC133550.2-201ENST00000567731 544 ntTSL 4 BASIC15.88■□□□□ 0.13
SCUBE3Q8IX30 ZNF790-AS1-204ENST00000589556 650 ntTSL 2 BASIC15.88■□□□□ 0.13
SCUBE3Q8IX30 TXNL4A-212ENST00000592957 546 ntTSL 3 BASIC15.88■□□□□ 0.13
SCUBE3Q8IX30 LINC02351-201ENST00000614728 289 ntTSL 2 BASIC15.88■□□□□ 0.13
SCUBE3Q8IX30 SMIM22-211ENST00000615889 1047 ntAPPRIS P4 TSL 5 BASIC15.88■□□□□ 0.13
SCUBE3Q8IX30 BNIP3P41-202ENST00000616656 861 ntBASIC15.88■□□□□ 0.13
SCUBE3Q8IX30 ETV2-208ENST00000621247 941 ntTSL 5 BASIC15.88■□□□□ 0.13
SCUBE3Q8IX30 NUP62-212ENST00000597723 1824 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
SCUBE3Q8IX30 HNRNPR-212ENST00000606561 1837 ntTSL 2 BASIC15.88■□□□□ 0.13
SCUBE3Q8IX30 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC15.88■□□□□ 0.13
SCUBE3Q8IX30 SLC5A7-202ENST00000409059 2032 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
SCUBE3Q8IX30 TGFB1-201ENST00000221930 2769 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
SCUBE3Q8IX30 TMPRSS4-214ENST00000523251 1689 ntAPPRIS ALT2 TSL 2 BASIC15.88■□□□□ 0.13
SCUBE3Q8IX30 UBC-205ENST00000536769 3745 ntAPPRIS P1 BASIC15.88■□□□□ 0.13
SCUBE3Q8IX30 SULT1C4-201ENST00000272452 1860 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
SCUBE3Q8IX30 ZNF365-205ENST00000395254 4173 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
SCUBE3Q8IX30 C17orf80-203ENST00000359042 3645 ntAPPRIS P3 TSL 5 BASIC15.88■□□□□ 0.13
SCUBE3Q8IX30 ADAMTS18-201ENST00000282849 5913 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
SCUBE3Q8IX30 NFATC4-210ENST00000554050 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
SCUBE3Q8IX30 CICP14-201ENST00000629111 2732 ntBASIC15.88■□□□□ 0.13
SCUBE3Q8IX30 GLIDR-202ENST00000625350 2588 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
SCUBE3Q8IX30 AKT1S1-205ENST00000391833 3640 ntAPPRIS P1 TSL 2 BASIC15.87■□□□□ 0.13
SCUBE3Q8IX30 SOWAHA-201ENST00000378693 3211 ntAPPRIS P1 BASIC15.87■□□□□ 0.13
SCUBE3Q8IX30 TRMO-203ENST00000375119 1647 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
SCUBE3Q8IX30 PPP2R5C-204ENST00000422945 4481 ntTSL 2 BASIC15.87■□□□□ 0.13
SCUBE3Q8IX30 CHI3L2-212ENST00000524472 1435 ntTSL 2 BASIC15.87■□□□□ 0.13
SCUBE3Q8IX30 ALDH1A2-201ENST00000249750 4098 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
SCUBE3Q8IX30 NMUR1-201ENST00000305141 3298 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
SCUBE3Q8IX30 SLC35A3-209ENST00000638338 2890 ntTSL 5 BASIC15.87■□□□□ 0.13
SCUBE3Q8IX30 TIGD4-201ENST00000304337 2472 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
SCUBE3Q8IX30 ZNF687-201ENST00000324048 5378 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
SCUBE3Q8IX30 ETNPPL-201ENST00000296486 2099 ntAPPRIS P3 TSL 1 (best) BASIC15.87■□□□□ 0.13
SCUBE3Q8IX30 MBNL1-202ENST00000282488 6458 ntTSL 5 BASIC15.87■□□□□ 0.13
SCUBE3Q8IX30 RBFOX3-211ENST00000583458 2934 ntAPPRIS ALT2 TSL 5 BASIC15.87■□□□□ 0.13
SCUBE3Q8IX30 ALG3-207ENST00000455059 1697 ntTSL 5 BASIC15.87■□□□□ 0.13
SCUBE3Q8IX30 PPP1R1B-205ENST00000579000 1466 ntTSL 5 BASIC15.87■□□□□ 0.13
SCUBE3Q8IX30 LBX2-201ENST00000341396 886 ntTSL 3 BASIC15.87■□□□□ 0.13
SCUBE3Q8IX30 PNRC1-203ENST00000369472 816 ntTSL 2 BASIC15.87■□□□□ 0.13
SCUBE3Q8IX30 HIST1H2BPS3-201ENST00000419683 341 ntBASIC15.87■□□□□ 0.13
SCUBE3Q8IX30 KRT43P-201ENST00000434019 910 ntBASIC15.87■□□□□ 0.13
SCUBE3Q8IX30 C2orf27AP3-201ENST00000434123 579 ntBASIC15.87■□□□□ 0.13
SCUBE3Q8IX30 Z94721.1-201ENST00000444102 385 ntTSL 5 BASIC15.87■□□□□ 0.13
SCUBE3Q8IX30 GGTLC2-202ENST00000448514 678 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
SCUBE3Q8IX30 RHOXF1P1-201ENST00000454625 772 ntTSL 3 BASIC15.87■□□□□ 0.13
SCUBE3Q8IX30 AP000439.4-201ENST00000567742 664 ntTSL 3 BASIC15.87■□□□□ 0.13
SCUBE3Q8IX30 ADAM3B-201ENST00000569937 840 ntBASIC15.87■□□□□ 0.13
SCUBE3Q8IX30 SMIM24-203ENST00000587847 820 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
SCUBE3Q8IX30 SPATA21-206ENST00000612240 603 ntTSL 5 BASIC15.87■□□□□ 0.13
SCUBE3Q8IX30 AL354718.3-201ENST00000616414 581 ntBASIC15.87■□□□□ 0.13
SCUBE3Q8IX30 CR382287.1-201ENST00000623954 586 ntBASIC15.87■□□□□ 0.13
SCUBE3Q8IX30 KCNQ4-201ENST00000347132 4099 ntAPPRIS P2 TSL 1 (best) BASIC15.87■□□□□ 0.13
SCUBE3Q8IX30 HEMK1-201ENST00000232854 6087 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
SCUBE3Q8IX30 ITSN1-205ENST00000381291 5437 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
SCUBE3Q8IX30 CYB5R3-205ENST00000407623 2153 ntTSL 3 BASIC15.87■□□□□ 0.13
SCUBE3Q8IX30 TMEM40-204ENST00000435218 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
SCUBE3Q8IX30 SLC1A5-201ENST00000412532 1750 ntTSL 2 BASIC15.87■□□□□ 0.13
SCUBE3Q8IX30 NOP2-222ENST00000617555 2017 ntTSL 5 BASIC15.87■□□□□ 0.13
SCUBE3Q8IX30 ASIC4-202ENST00000358078 2741 ntAPPRIS ALT2 TSL 5 BASIC15.87■□□□□ 0.13
SCUBE3Q8IX30 MAP4K1-210ENST00000591517 2700 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
SCUBE3Q8IX30 ZNF575-202ENST00000458714 2285 ntTSL 2 BASIC15.87■□□□□ 0.13
SCUBE3Q8IX30 POLR3D-202ENST00000397802 5494 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
SCUBE3Q8IX30 PTPRO-202ENST00000348962 5061 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
SCUBE3Q8IX30 GFOD1-203ENST00000379287 8751 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
SCUBE3Q8IX30 SEMA3G-201ENST00000231721 4899 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
SCUBE3Q8IX30 CHST3-201ENST00000373115 6970 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
SCUBE3Q8IX30 RCSD1-206ENST00000537350 3044 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
SCUBE3Q8IX30 SLC5A7-201ENST00000264047 5152 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
SCUBE3Q8IX30 RPH3AL-201ENST00000323434 2809 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
SCUBE3Q8IX30 FBXL19-202ENST00000380310 3796 ntAPPRIS P2 TSL 2 BASIC15.86■□□□□ 0.13
SCUBE3Q8IX30 PAQR6-204ENST00000356983 2143 ntAPPRIS ALT1 TSL 2 BASIC15.86■□□□□ 0.13
SCUBE3Q8IX30 CCNL1-202ENST00000295926 2388 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
SCUBE3Q8IX30 PNMA3-202ENST00000593810 1432 ntAPPRIS P1 BASIC15.86■□□□□ 0.13
SCUBE3Q8IX30 GNB4-201ENST00000232564 6434 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
SCUBE3Q8IX30 LMAN1-201ENST00000251047 5521 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
SCUBE3Q8IX30 PDGFRL-201ENST00000251630 1901 ntAPPRIS P1 TSL 5 BASIC15.86■□□□□ 0.13
SCUBE3Q8IX30 MED16-203ENST00000325464 2922 ntAPPRIS P2 TSL 5 BASIC15.86■□□□□ 0.13
SCUBE3Q8IX30 NPY5R-203ENST00000515560 3183 ntAPPRIS P1 TSL 2 BASIC15.86■□□□□ 0.13
SCUBE3Q8IX30 MTRF1L-201ENST00000367230 3431 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
SCUBE3Q8IX30 OTUD3-201ENST00000375120 6397 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 33.1 ms