Protein–RNA interactions for Protein: Q7Z3B4

NUP54, Nucleoporin p54, humanhuman

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54Q7Z3B4 AKAP12-204ENST00000402676 8432 ntAPPRIS P4 TSL 5 BASIC14□□□□□ -0.17
NUP54Q7Z3B4 KRTAP10-7-201ENST00000609664 1578 ntAPPRIS P1 BASIC14□□□□□ -0.17
NUP54Q7Z3B4 PSMC3-213ENST00000619920 1580 ntAPPRIS P2 TSL 1 (best) BASIC14□□□□□ -0.17
NUP54Q7Z3B4 ANK1-202ENST00000289734 8297 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
NUP54Q7Z3B4 SPAG6-201ENST00000313311 2421 ntTSL 1 (best) BASIC14□□□□□ -0.17
NUP54Q7Z3B4 PRRT2-207ENST00000572820 2403 ntAPPRIS P1 TSL 5 BASIC14□□□□□ -0.17
NUP54Q7Z3B4 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC14□□□□□ -0.17
NUP54Q7Z3B4 HSD17B6-201ENST00000322165 1512 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
NUP54Q7Z3B4 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
NUP54Q7Z3B4 CYTH3-201ENST00000350796 4505 ntAPPRIS P2 TSL 1 (best) BASIC14□□□□□ -0.17
NUP54Q7Z3B4 CYTH3-202ENST00000396741 4508 ntAPPRIS ALT1 TSL 5 BASIC14□□□□□ -0.17
NUP54Q7Z3B4 PBX3-204ENST00000373489 2775 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.17
NUP54Q7Z3B4 GPR84-201ENST00000267015 1497 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
NUP54Q7Z3B4 SMARCA2-208ENST00000382194 5679 ntAPPRIS P1 TSL 5 BASIC13.99□□□□□ -0.17
NUP54Q7Z3B4 CASQ1-201ENST00000368078 1897 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
NUP54Q7Z3B4 MRPS17-201ENST00000285298 1845 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
NUP54Q7Z3B4 TDRP-205ENST00000613071 3421 ntAPPRIS P1 TSL 3 BASIC13.99□□□□□ -0.17
NUP54Q7Z3B4 RSBN1-204ENST00000612242 6592 ntAPPRIS P1 TSL 2 BASIC13.99□□□□□ -0.17
NUP54Q7Z3B4 UBAC2-AS1-201ENST00000426037 1771 ntTSL 2 BASIC13.99□□□□□ -0.17
NUP54Q7Z3B4 TC2N-206ENST00000556018 1770 ntTSL 2 BASIC13.99□□□□□ -0.17
NUP54Q7Z3B4 FDFT1-202ENST00000443614 1393 ntTSL 2 BASIC13.99□□□□□ -0.17
NUP54Q7Z3B4 AC018665.1-201ENST00000622927 1362 ntBASIC13.99□□□□□ -0.17
NUP54Q7Z3B4 CNOT8-201ENST00000285896 2528 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
NUP54Q7Z3B4 NAALADL1-203ENST00000356632 2118 ntTSL 5 BASIC13.99□□□□□ -0.17
NUP54Q7Z3B4 UCK1-203ENST00000372211 2114 ntTSL 3 BASIC13.99□□□□□ -0.17
NUP54Q7Z3B4 MSTO2P-201ENST00000314835 1709 ntBASIC13.99□□□□□ -0.17
NUP54Q7Z3B4 ZNF79-201ENST00000342483 2078 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
NUP54Q7Z3B4 REXO1L2P-201ENST00000425429 2069 ntBASIC13.99□□□□□ -0.17
NUP54Q7Z3B4 SIDT1-201ENST00000264852 5080 ntAPPRIS P1 TSL 2 BASIC13.99□□□□□ -0.17
NUP54Q7Z3B4 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
NUP54Q7Z3B4 UEVLD-201ENST00000300038 995 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
NUP54Q7Z3B4 HLA-K-203ENST00000430151 1046 ntBASIC13.99□□□□□ -0.17
NUP54Q7Z3B4 CR769775.1-201ENST00000443347 931 ntTSL 3 BASIC13.99□□□□□ -0.17
NUP54Q7Z3B4 AC017116.1-201ENST00000445938 708 ntTSL 3 BASIC13.99□□□□□ -0.17
NUP54Q7Z3B4 BCRP2-202ENST00000447763 634 ntBASIC13.99□□□□□ -0.17
NUP54Q7Z3B4 GGTLC2-202ENST00000448514 678 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
NUP54Q7Z3B4 AP000552.1-208ENST00000452952 576 ntTSL 4 BASIC13.99□□□□□ -0.17
NUP54Q7Z3B4 IP6K1-203ENST00000460540 1260 ntTSL 2 BASIC13.99□□□□□ -0.17
NUP54Q7Z3B4 TMEM14B-212ENST00000475942 992 ntTSL 2 BASIC13.99□□□□□ -0.17
NUP54Q7Z3B4 NAA50-208ENST00000497255 789 ntTSL 5 BASIC13.99□□□□□ -0.17
NUP54Q7Z3B4 BCRP6-201ENST00000510112 632 ntBASIC13.99□□□□□ -0.17
NUP54Q7Z3B4 BCRP7-201ENST00000511549 544 ntBASIC13.99□□□□□ -0.17
NUP54Q7Z3B4 BRF2-202ENST00000520601 1192 ntTSL 3 BASIC13.99□□□□□ -0.17
NUP54Q7Z3B4 TROAP-207ENST00000548311 623 ntAPPRIS ALT2 TSL 2 BASIC13.99□□□□□ -0.17
NUP54Q7Z3B4 IGHV3OR16-8-201ENST00000565407 349 ntAPPRIS P1 BASIC13.99□□□□□ -0.17
NUP54Q7Z3B4 AC133550.2-201ENST00000567731 544 ntTSL 4 BASIC13.99□□□□□ -0.17
NUP54Q7Z3B4 AIPL1-204ENST00000570466 1196 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
NUP54Q7Z3B4 AC145423.3-201ENST00000615987 467 ntBASIC13.99□□□□□ -0.17
NUP54Q7Z3B4 C9orf50-202ENST00000619117 796 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
NUP54Q7Z3B4 CDK5RAP2-202ENST00000360190 5985 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
NUP54Q7Z3B4 KYAT1-202ENST00000320665 1623 ntTSL 2 BASIC13.99□□□□□ -0.17
NUP54Q7Z3B4 DUOXA1-210ENST00000559014 1965 ntTSL 2 BASIC13.99□□□□□ -0.17
NUP54Q7Z3B4 SLC52A3-201ENST00000217254 2654 ntAPPRIS P1 TSL 5 BASIC13.99□□□□□ -0.17
NUP54Q7Z3B4 PIMREG-205ENST00000572447 1948 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
NUP54Q7Z3B4 CELF4-223ENST00000603232 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC13.99□□□□□ -0.17
NUP54Q7Z3B4 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
NUP54Q7Z3B4 C16orf54-201ENST00000329410 2585 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
NUP54Q7Z3B4 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
NUP54Q7Z3B4 PACSIN2-201ENST00000263246 3249 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
NUP54Q7Z3B4 IL12A-201ENST00000305579 1522 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
NUP54Q7Z3B4 PPP2R1B-203ENST00000393055 1525 ntTSL 2 BASIC13.99□□□□□ -0.17
NUP54Q7Z3B4 SLC35C1-201ENST00000314134 4171 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
NUP54Q7Z3B4 AP000845.1-201ENST00000581677 2131 ntBASIC13.99□□□□□ -0.17
NUP54Q7Z3B4 PPM1F-202ENST00000397495 1778 ntTSL 2 BASIC13.99□□□□□ -0.17
NUP54Q7Z3B4 ADCYAP1R1-204ENST00000409489 1761 ntTSL 5 BASIC13.99□□□□□ -0.17
NUP54Q7Z3B4 SHISA9-201ENST00000423335 4043 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
NUP54Q7Z3B4 CDCP2-201ENST00000371330 2723 ntAPPRIS P2 TSL 2 BASIC13.99□□□□□ -0.17
NUP54Q7Z3B4 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
NUP54Q7Z3B4 ASAP1-202ENST00000518721 5507 ntAPPRIS P3 TSL 5 BASIC13.98□□□□□ -0.17
NUP54Q7Z3B4 AC138904.3-201ENST00000635780 2681 ntTSL 5 BASIC13.98□□□□□ -0.17
NUP54Q7Z3B4 CSF2RB-202ENST00000403662 4863 ntAPPRIS P2 TSL 5 BASIC13.98□□□□□ -0.17
NUP54Q7Z3B4 SEMA3B-212ENST00000616701 2958 ntAPPRIS P3 TSL 1 (best) BASIC13.98□□□□□ -0.17
NUP54Q7Z3B4 NUMBL-201ENST00000252891 3561 ntAPPRIS P3 TSL 1 (best) BASIC13.98□□□□□ -0.17
NUP54Q7Z3B4 PCED1B-202ENST00000546455 2328 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
NUP54Q7Z3B4 ZNF252P-AS1-201ENST00000527067 3236 ntBASIC13.98□□□□□ -0.17
NUP54Q7Z3B4 BTBD10-208ENST00000528120 1662 ntTSL 2 BASIC13.98□□□□□ -0.17
NUP54Q7Z3B4 TMEM198B-201ENST00000471276 1958 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
NUP54Q7Z3B4 PCDHGB8P-201ENST00000502926 1973 ntBASIC13.98□□□□□ -0.17
NUP54Q7Z3B4 PATZ1-204ENST00000405309 3711 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
NUP54Q7Z3B4 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
NUP54Q7Z3B4 PAAF1-207ENST00000536003 1639 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
NUP54Q7Z3B4 STRN3-201ENST00000355683 3970 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
NUP54Q7Z3B4 COMT-205ENST00000406520 1339 ntAPPRIS P3 TSL 1 (best) BASIC13.98□□□□□ -0.17
NUP54Q7Z3B4 ASCL1-201ENST00000266744 2472 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
NUP54Q7Z3B4 MPC2-202ENST00000367846 2177 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
NUP54Q7Z3B4 PTGES3L-AARSD1-204ENST00000421990 2150 ntAPPRIS P1 TSL 2 BASIC13.98□□□□□ -0.17
NUP54Q7Z3B4 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC13.98□□□□□ -0.17
NUP54Q7Z3B4 MGEA5-203ENST00000370094 3314 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
NUP54Q7Z3B4 FAM118B-210ENST00000627851 1862 ntTSL 5 BASIC13.98□□□□□ -0.17
NUP54Q7Z3B4 NRCAM-217ENST00000613830 3025 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
NUP54Q7Z3B4 TIFA-201ENST00000361717 4157 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
NUP54Q7Z3B4 LBX2-201ENST00000341396 886 ntTSL 3 BASIC13.98□□□□□ -0.17
NUP54Q7Z3B4 SSH3-203ENST00000376757 2990 ntTSL 2 BASIC13.98□□□□□ -0.17
NUP54Q7Z3B4 UCHL3-201ENST00000377595 844 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
NUP54Q7Z3B4 MNX1-AS2-201ENST00000429228 374 ntTSL 3 BASIC13.98□□□□□ -0.17
NUP54Q7Z3B4 AC115284.1-201ENST00000488257 547 ntTSL 4 BASIC13.98□□□□□ -0.17
NUP54Q7Z3B4 AC093879.1-201ENST00000508959 1176 ntTSL 2 BASIC13.98□□□□□ -0.17
NUP54Q7Z3B4 IL32-222ENST00000533097 814 ntAPPRIS P4 TSL 2 BASIC13.98□□□□□ -0.17
NUP54Q7Z3B4 AP000808.2-201ENST00000542410 569 ntTSL 4 BASIC13.98□□□□□ -0.17
NUP54Q7Z3B4 HIRIP3-204ENST00000564026 988 ntTSL 2 BASIC13.98□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 69.9 ms